BDGP Sequence Production Resources |
Search the DGRC for LD28817
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 288 |
Well: | 17 |
Vector: | pOT2 |
Associated Gene/Transcript | CG6962-RA |
Protein status: | LD28817.pep: gold |
Preliminary Size: | 2882 |
Sequenced Size: | 2511 |
Gene | Date | Evidence |
---|---|---|
CG6962 | 2001-01-01 | Release 2 assignment |
CG6962 | 2001-09-19 | Blastp of sequenced clone |
CG6962 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6962 | 2008-04-29 | Release 5.5 accounting |
CG6962 | 2008-08-15 | Release 5.9 accounting |
CG6962 | 2008-12-18 | 5.12 accounting |
2511 bp (2511 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058593
> LD28817.complete TCCGGCAACACGACGAAAGGTTTTTGTTTACAGCACGCCGGCAAGAGTTT TTATGATTTAAAGTGATATTTATTTGTAATTTAAGACAATTTTGACGCAC ACGAACTCACCATGTCGCAGACCATGCCGCCAGAAAACCTAAGCAGCCGC CTGTTGACGGTGCTCAGTTTGCCTCTATTCGAGCGCGTGCACGAGCTGAG CATCCTGTTCGATCGGTGCTCCTTGCGCCAAGTGCAGGAGATCTTCCCCC ACGTTGTGCACTCCATCTTCGGGATAGATGGCAATCCGTTGGGCTGGGGC CTGCGGACCACGACGCTTGAAAACAATCCGGTGCAATTCCAAACGCTGCA CCAGTTCTTCGGCGTCTGTGGTCCCCTGATGCATGTTTGCCACCGTCTGC TCGTCGACCAGTACAAATTCGAACTAGACATCAATCTGCTGCCGGCGAAA TTCGTTAGCCTGCTGCAGAATGGTCAGAATCCTAGTTTCTATGCAGAACT CATCAATGTGGAGACGATGATGCACCAGGTGTCCACGCTCTCGCTCAACG CCTTCGACTTCTATGTGATTCACTTTGTGCTATATGCCCTGCAGCCACTA CACTCTATCAATCCCATAGCCATGCAAATCCACAATGTGCGCAGCAAAAC GGTCTACTTGAAACTGGTGGCCGAGTACCTTAACAACTTCCTGCCGCTGC TTCCCGATGCACGCATAGAACCGGTGCACTTTAGCAGCGGGGTTAAGGCG CCACAGCCATTGCCAGCCCAAGCATTACAGCCCCAAAGACAACCGCGCTA CATTAAGATTCCCAGCTCCTATCGCAATGGTGGAAACGTGTCGGGCGGCG GTGGCATTCCCAGTGCAAGCGTTGGCGTCGGGAACATATCACCACAGTCC AACAGCCCAAGTGCCAGCTCCAACCGGGCTTACGCATGGCGATCTGAAAG TGTACTCCACTTTTTCGTAGACATCTGGCTGCGTTACGACATCGAGTCGG AGCATCATTTGCCCAGCAGCGATTTTGTGCGCGGCGTACGCACCTTGGTC AAGCAGGTGCACTTTTTTGCAAATGGCGCTCAGCACGACCACAGTTCGCT GTGCGCGCTGCGTAAGGTATCGTTGAGTATGGTTAAGGCAAGAATCTACG CCTTTATTGTTGGTTTGATCGATCGTTGGCCTCTGGACAGCTCGTTGATG GTGGTGCTGGAGCTTTGGCTCAGTTACATTCAGCCATGGAGATACACCAT AGCGTCGCTGAACAATAAAACACCTAGTCTTTCCTACAGGCCGCCCATTT CGTCCTGCTTCGATGGCTTTATTATCGACAACCTTATTATGTACACTCAC ATATTTATGCAGCTACTGCCACACTTTGGGCGGTTGGACTACACTGTGTA TAGGAACGCATTTATGCTGTACCGTCTGGCCACAATCTTCTCTCAACATG ATTTAGTAGATAAACTTCAGCGTTTTGAGGCTATACATGCAGGCAATTCT TTTGGCTTTGACTCGCCACAGCGCCAAGTCAACATAATGAACAAATCCGT TTCTCCAGGCACTCCGTGGAATCAAGCTGTTAACATAAGCTCCGCCAAAC TTTTTAGTTATACTATGCAAACGCAAATGGAAACCTTCTTGTTGCTAATC AGTATGGCCCGCAACTCGGTGCTCAGAGACATCGCCAAGCTACGAAATGA AATTGCGGAGAGACAGCGGTCTGAAGGATTTCTTAAGAACTTTTATAAGA AGATCTTTGGCGAGTGCACCCAGGAAGAAGTGACCCTGCGCGAGTTCAGT CGCATTCCGGAGGTTTTGCGTCAATGCATCGACGCATTCTGTCGAACGTT TAATGTTGATCAAGCGAATCTATCTATGCATGAAACTCTGCCAGAGGAAC CATCTGTGCCTTCTGCGCCTGCTGTGCAAAATTTCAGCTTTTTCGACGCC AGCGACACTTTGGACACCTCAAAGCTGAACCCGCACCAAATGTCGCTCAA TGCTTCTAGCCTGCATGCCGCTGTCGATCCCGCCACGCTGCCCATCCAAA CCAATGAAGTTAGAGCATTGGTAAGAATGCTGCATTTCGTTTCGGAAAAG ATTAACAATAAGTATGGTAGTCAATTACAAGGATTCTACGTCCGCGACGA TTACTTCGGAAAAGTGGCCCGGCAACTGTTGTACGCTCCGATGACGGAAC AGTGGTTTGACAAAAGCTCCGGCCACGTTGAAATATGTGAAAATCTGGTT CCTCCGCGAGTTTGCCTACGACCATTGGGCTCTATACCCGCTCTCACAAC GATCGGTTGTTCGATGATCTTTGGACAACTGGTGTGGGGTGCCCCACTCC TGGGAATATTTATTCTGGCGACTGTGCTATTAGTCTATATCATGCTGCAG GCATTGTTTTCCTAGTTTGAAATTTTTAACTAGATAGATTACTAAATATG TGACATTTATATATTTATATAAAACTAAAGAGACTACGATTACAAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6962-RA | 2595 | CG6962-RA | 103..2595 | 1..2493 | 12465 | 100 | Plus |
CG6962.a | 2477 | CG6962.a | 67..2477 | 83..2493 | 12055 | 100 | Plus |
CG6962.b | 2531 | CG6962.b | 47..2159 | 1..2113 | 10565 | 100 | Plus |
CG6962.b | 2531 | CG6962.b | 2157..2531 | 2119..2493 | 1875 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 7706641..7707468 | 1271..444 | 4110 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 7705188..7705570 | 2493..2111 | 1915 | 100 | Minus |
chr3R | 27901430 | chr3R | 7705939..7706253 | 1856..1542 | 1575 | 100 | Minus |
chr3R | 27901430 | chr3R | 7707521..7707821 | 445..145 | 1475 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 7706314..7706583 | 1541..1272 | 1335 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 7705624..7705881 | 2112..1855 | 1275 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 7707878..7708021 | 144..1 | 705 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 11881155..11881982 | 1271..444 | 4140 | 100 | Minus |
3R | 32079331 | 3R | 11879700..11880084 | 2495..2111 | 1925 | 100 | Minus |
3R | 32079331 | 3R | 11880453..11880767 | 1856..1542 | 1575 | 100 | Minus |
3R | 32079331 | 3R | 11882035..11882335 | 445..145 | 1505 | 100 | Minus |
3R | 32079331 | 3R | 11880828..11881097 | 1541..1272 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 11880138..11880395 | 2112..1855 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 11882392..11882535 | 144..1 | 720 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 11621986..11622813 | 1271..444 | 4140 | 100 | Minus |
3R | 31820162 | 3R | 11620531..11620915 | 2495..2111 | 1925 | 100 | Minus |
3R | 31820162 | 3R | 11621284..11621598 | 1856..1542 | 1575 | 100 | Minus |
3R | 31820162 | 3R | 11622866..11623166 | 445..145 | 1505 | 100 | Minus |
3R | 31820162 | 3R | 11621659..11621928 | 1541..1272 | 1350 | 100 | Minus |
3R | 31820162 | 3R | 11620969..11621226 | 2112..1855 | 1290 | 100 | Minus |
3R | 31820162 | 3R | 11623223..11623366 | 144..1 | 720 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 7705188..7705568 | 2113..2493 | 100 | <- | Minus |
chr3R | 7705624..7705881 | 1855..2112 | 99 | <- | Minus |
chr3R | 7705941..7706253 | 1542..1854 | 100 | <- | Minus |
chr3R | 7706314..7706583 | 1272..1541 | 99 | <- | Minus |
chr3R | 7706641..7707467 | 445..1271 | 99 | <- | Minus |
chr3R | 7707522..7707821 | 145..444 | 99 | <- | Minus |
chr3R | 7707878..7708021 | 1..144 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6962-RA | 1..2304 | 112..2415 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6962-RA | 1..2304 | 112..2415 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6962-RA | 1..2304 | 112..2415 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6962-RA | 1..2304 | 112..2415 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6962-RA | 1..2304 | 112..2415 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6962-RA | 1..2493 | 1..2493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6962-RA | 1..2493 | 1..2493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6962-RA | 1..2492 | 2..2493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6962-RA | 1..2493 | 1..2493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6962-RA | 1..2492 | 2..2493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11880828..11881097 | 1272..1541 | 100 | <- | Minus |
3R | 11879702..11880082 | 2113..2493 | 100 | <- | Minus |
3R | 11880138..11880395 | 1855..2112 | 100 | <- | Minus |
3R | 11880455..11880767 | 1542..1854 | 100 | <- | Minus |
3R | 11881155..11881981 | 445..1271 | 100 | <- | Minus |
3R | 11882036..11882335 | 145..444 | 100 | <- | Minus |
3R | 11882392..11882535 | 1..144 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11880828..11881097 | 1272..1541 | 100 | <- | Minus |
3R | 11879702..11880082 | 2113..2493 | 100 | <- | Minus |
3R | 11880138..11880395 | 1855..2112 | 100 | <- | Minus |
3R | 11880455..11880767 | 1542..1854 | 100 | <- | Minus |
3R | 11881155..11881981 | 445..1271 | 100 | <- | Minus |
3R | 11882036..11882335 | 145..444 | 100 | <- | Minus |
3R | 11882392..11882535 | 1..144 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11880828..11881097 | 1272..1541 | 100 | <- | Minus |
3R | 11879702..11880082 | 2113..2493 | 100 | <- | Minus |
3R | 11880138..11880395 | 1855..2112 | 100 | <- | Minus |
3R | 11880455..11880767 | 1542..1854 | 100 | <- | Minus |
3R | 11881155..11881981 | 445..1271 | 100 | <- | Minus |
3R | 11882036..11882335 | 145..444 | 100 | <- | Minus |
3R | 11882392..11882535 | 1..144 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 7705424..7705804 | 2113..2493 | 100 | <- | Minus |
arm_3R | 7705860..7706117 | 1855..2112 | 100 | <- | Minus |
arm_3R | 7706177..7706489 | 1542..1854 | 100 | <- | Minus |
arm_3R | 7706550..7706819 | 1272..1541 | 100 | <- | Minus |
arm_3R | 7706877..7707703 | 445..1271 | 100 | <- | Minus |
arm_3R | 7707758..7708057 | 145..444 | 100 | <- | Minus |
arm_3R | 7708114..7708257 | 1..144 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11621659..11621928 | 1272..1541 | 100 | <- | Minus |
3R | 11620533..11620913 | 2113..2493 | 100 | <- | Minus |
3R | 11620969..11621226 | 1855..2112 | 100 | <- | Minus |
3R | 11621286..11621598 | 1542..1854 | 100 | <- | Minus |
3R | 11621986..11622812 | 445..1271 | 100 | <- | Minus |
3R | 11622867..11623166 | 145..444 | 100 | <- | Minus |
3R | 11623223..11623366 | 1..144 | 100 | Minus |
Translation from 111 to 2414
> LD28817.hyp MSQTMPPENLSSRLLTVLSLPLFERVHELSILFDRCSLRQVQEIFPHVVH SIFGIDGNPLGWGLRTTTLENNPVQFQTLHQFFGVCGPLMHVCHRLLVDQ YKFELDINLLPAKFVSLLQNGQNPSFYAELINVETMMHQVSTLSLNAFDF YVIHFVLYALQPLHSINPIAMQIHNVRSKTVYLKLVAEYLNNFLPLLPDA RIEPVHFSSGVKAPQPLPAQALQPQRQPRYIKIPSSYRNGGNVSGGGGIP SASVGVGNISPQSNSPSASSNRAYAWRSESVLHFFVDIWLRYDIESEHHL PSSDFVRGVRTLVKQVHFFANGAQHDHSSLCALRKVSLSMVKARIYAFIV GLIDRWPLDSSLMVVLELWLSYIQPWRYTIASLNNKTPSLSYRPPISSCF DGFIIDNLIMYTHIFMQLLPHFGRLDYTVYRNAFMLYRLATIFSQHDLVD KLQRFEAIHAGNSFGFDSPQRQVNIMNKSVSPGTPWNQAVNISSAKLFSY TMQTQMETFLLLISMARNSVLRDIAKLRNEIAERQRSEGFLKNFYKKIFG ECTQEEVTLREFSRIPEVLRQCIDAFCRTFNVDQANLSMHETLPEEPSVP SAPAVQNFSFFDASDTLDTSKLNPHQMSLNASSLHAAVDPATLPIQTNEV RALVRMLHFVSEKINNKYGSQLQGFYVRDDYFGKVARQLLYAPMTEQWFD KSSGHVEICENLVPPRVCLRPLGSIPALTTIGCSMIFGQLVWGAPLLGIF ILATVLLVYIMLQALFS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6962-PA | 767 | CG6962-PA | 1..767 | 1..767 | 3997 | 100 | Plus |
Translation from 111 to 2414
> LD28817.pep MSQTMPPENLSSRLLTVLSLPLFERVHELSILFDRCSLRQVQEIFPHVVH SIFGIDGNPLGWGLRTTTLENNPVQFQTLHQFFGVCGPLMHVCHRLLVDQ YKFELDINLLPAKFVSLLQNGQNPSFYAELINVETMMHQVSTLSLNAFDF YVIHFVLYALQPLHSINPIAMQIHNVRSKTVYLKLVAEYLNNFLPLLPDA RIEPVHFSSGVKAPQPLPAQALQPQRQPRYIKIPSSYRNGGNVSGGGGIP SASVGVGNISPQSNSPSASSNRAYAWRSESVLHFFVDIWLRYDIESEHHL PSSDFVRGVRTLVKQVHFFANGAQHDHSSLCALRKVSLSMVKARIYAFIV GLIDRWPLDSSLMVVLELWLSYIQPWRYTIASLNNKTPSLSYRPPISSCF DGFIIDNLIMYTHIFMQLLPHFGRLDYTVYRNAFMLYRLATIFSQHDLVD KLQRFEAIHAGNSFGFDSPQRQVNIMNKSVSPGTPWNQAVNISSAKLFSY TMQTQMETFLLLISMARNSVLRDIAKLRNEIAERQRSEGFLKNFYKKIFG ECTQEEVTLREFSRIPEVLRQCIDAFCRTFNVDQANLSMHETLPEEPSVP SAPAVQNFSFFDASDTLDTSKLNPHQMSLNASSLHAAVDPATLPIQTNEV RALVRMLHFVSEKINNKYGSQLQGFYVRDDYFGKVARQLLYAPMTEQWFD KSSGHVEICENLVPPRVCLRPLGSIPALTTIGCSMIFGQLVWGAPLLGIF ILATVLLVYIMLQALFS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23059-PA | 768 | GF23059-PA | 1..768 | 1..767 | 3153 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17183-PA | 765 | GG17183-PA | 1..765 | 1..767 | 3650 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18779-PA | 761 | GH18779-PA | 1..761 | 1..767 | 2595 | 63.2 | Plus |
Dgri\GH13901-PA | 204 | GH13901-PA | 1..204 | 564..767 | 629 | 56.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6962-PA | 767 | CG6962-PA | 1..767 | 1..767 | 3997 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22670-PA | 761 | GI22670-PA | 1..761 | 1..767 | 2596 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12365-PA | 760 | GL12365-PA | 1..759 | 1..767 | 2551 | 63.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19987-PA | 760 | GA19987-PA | 1..759 | 1..767 | 2545 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26063-PA | 766 | GM26063-PA | 1..766 | 1..767 | 3845 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20627-PA | 766 | GD20627-PA | 1..766 | 1..767 | 3847 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23398-PA | 761 | GJ23398-PA | 1..761 | 1..767 | 2744 | 66 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14473-PA | 762 | GK14473-PA | 1..762 | 1..767 | 2682 | 66.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10077-PA | 767 | GE10077-PA | 1..767 | 1..767 | 3728 | 90.5 | Plus |