Clone LD28817 Report

Search the DGRC for LD28817

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:288
Well:17
Vector:pOT2
Associated Gene/TranscriptCG6962-RA
Protein status:LD28817.pep: gold
Preliminary Size:2882
Sequenced Size:2511

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6962 2001-01-01 Release 2 assignment
CG6962 2001-09-19 Blastp of sequenced clone
CG6962 2003-01-01 Sim4 clustering to Release 3
CG6962 2008-04-29 Release 5.5 accounting
CG6962 2008-08-15 Release 5.9 accounting
CG6962 2008-12-18 5.12 accounting

Clone Sequence Records

LD28817.complete Sequence

2511 bp (2511 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058593

> LD28817.complete
TCCGGCAACACGACGAAAGGTTTTTGTTTACAGCACGCCGGCAAGAGTTT
TTATGATTTAAAGTGATATTTATTTGTAATTTAAGACAATTTTGACGCAC
ACGAACTCACCATGTCGCAGACCATGCCGCCAGAAAACCTAAGCAGCCGC
CTGTTGACGGTGCTCAGTTTGCCTCTATTCGAGCGCGTGCACGAGCTGAG
CATCCTGTTCGATCGGTGCTCCTTGCGCCAAGTGCAGGAGATCTTCCCCC
ACGTTGTGCACTCCATCTTCGGGATAGATGGCAATCCGTTGGGCTGGGGC
CTGCGGACCACGACGCTTGAAAACAATCCGGTGCAATTCCAAACGCTGCA
CCAGTTCTTCGGCGTCTGTGGTCCCCTGATGCATGTTTGCCACCGTCTGC
TCGTCGACCAGTACAAATTCGAACTAGACATCAATCTGCTGCCGGCGAAA
TTCGTTAGCCTGCTGCAGAATGGTCAGAATCCTAGTTTCTATGCAGAACT
CATCAATGTGGAGACGATGATGCACCAGGTGTCCACGCTCTCGCTCAACG
CCTTCGACTTCTATGTGATTCACTTTGTGCTATATGCCCTGCAGCCACTA
CACTCTATCAATCCCATAGCCATGCAAATCCACAATGTGCGCAGCAAAAC
GGTCTACTTGAAACTGGTGGCCGAGTACCTTAACAACTTCCTGCCGCTGC
TTCCCGATGCACGCATAGAACCGGTGCACTTTAGCAGCGGGGTTAAGGCG
CCACAGCCATTGCCAGCCCAAGCATTACAGCCCCAAAGACAACCGCGCTA
CATTAAGATTCCCAGCTCCTATCGCAATGGTGGAAACGTGTCGGGCGGCG
GTGGCATTCCCAGTGCAAGCGTTGGCGTCGGGAACATATCACCACAGTCC
AACAGCCCAAGTGCCAGCTCCAACCGGGCTTACGCATGGCGATCTGAAAG
TGTACTCCACTTTTTCGTAGACATCTGGCTGCGTTACGACATCGAGTCGG
AGCATCATTTGCCCAGCAGCGATTTTGTGCGCGGCGTACGCACCTTGGTC
AAGCAGGTGCACTTTTTTGCAAATGGCGCTCAGCACGACCACAGTTCGCT
GTGCGCGCTGCGTAAGGTATCGTTGAGTATGGTTAAGGCAAGAATCTACG
CCTTTATTGTTGGTTTGATCGATCGTTGGCCTCTGGACAGCTCGTTGATG
GTGGTGCTGGAGCTTTGGCTCAGTTACATTCAGCCATGGAGATACACCAT
AGCGTCGCTGAACAATAAAACACCTAGTCTTTCCTACAGGCCGCCCATTT
CGTCCTGCTTCGATGGCTTTATTATCGACAACCTTATTATGTACACTCAC
ATATTTATGCAGCTACTGCCACACTTTGGGCGGTTGGACTACACTGTGTA
TAGGAACGCATTTATGCTGTACCGTCTGGCCACAATCTTCTCTCAACATG
ATTTAGTAGATAAACTTCAGCGTTTTGAGGCTATACATGCAGGCAATTCT
TTTGGCTTTGACTCGCCACAGCGCCAAGTCAACATAATGAACAAATCCGT
TTCTCCAGGCACTCCGTGGAATCAAGCTGTTAACATAAGCTCCGCCAAAC
TTTTTAGTTATACTATGCAAACGCAAATGGAAACCTTCTTGTTGCTAATC
AGTATGGCCCGCAACTCGGTGCTCAGAGACATCGCCAAGCTACGAAATGA
AATTGCGGAGAGACAGCGGTCTGAAGGATTTCTTAAGAACTTTTATAAGA
AGATCTTTGGCGAGTGCACCCAGGAAGAAGTGACCCTGCGCGAGTTCAGT
CGCATTCCGGAGGTTTTGCGTCAATGCATCGACGCATTCTGTCGAACGTT
TAATGTTGATCAAGCGAATCTATCTATGCATGAAACTCTGCCAGAGGAAC
CATCTGTGCCTTCTGCGCCTGCTGTGCAAAATTTCAGCTTTTTCGACGCC
AGCGACACTTTGGACACCTCAAAGCTGAACCCGCACCAAATGTCGCTCAA
TGCTTCTAGCCTGCATGCCGCTGTCGATCCCGCCACGCTGCCCATCCAAA
CCAATGAAGTTAGAGCATTGGTAAGAATGCTGCATTTCGTTTCGGAAAAG
ATTAACAATAAGTATGGTAGTCAATTACAAGGATTCTACGTCCGCGACGA
TTACTTCGGAAAAGTGGCCCGGCAACTGTTGTACGCTCCGATGACGGAAC
AGTGGTTTGACAAAAGCTCCGGCCACGTTGAAATATGTGAAAATCTGGTT
CCTCCGCGAGTTTGCCTACGACCATTGGGCTCTATACCCGCTCTCACAAC
GATCGGTTGTTCGATGATCTTTGGACAACTGGTGTGGGGTGCCCCACTCC
TGGGAATATTTATTCTGGCGACTGTGCTATTAGTCTATATCATGCTGCAG
GCATTGTTTTCCTAGTTTGAAATTTTTAACTAGATAGATTACTAAATATG
TGACATTTATATATTTATATAAAACTAAAGAGACTACGATTACAAAAAAA
AAAAAAAAAAA

LD28817.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6962-RA 2595 CG6962-RA 103..2595 1..2493 12465 100 Plus
CG6962.a 2477 CG6962.a 67..2477 83..2493 12055 100 Plus
CG6962.b 2531 CG6962.b 47..2159 1..2113 10565 100 Plus
CG6962.b 2531 CG6962.b 2157..2531 2119..2493 1875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7706641..7707468 1271..444 4110 99.8 Minus
chr3R 27901430 chr3R 7705188..7705570 2493..2111 1915 100 Minus
chr3R 27901430 chr3R 7705939..7706253 1856..1542 1575 100 Minus
chr3R 27901430 chr3R 7707521..7707821 445..145 1475 99.3 Minus
chr3R 27901430 chr3R 7706314..7706583 1541..1272 1335 99.6 Minus
chr3R 27901430 chr3R 7705624..7705881 2112..1855 1275 99.6 Minus
chr3R 27901430 chr3R 7707878..7708021 144..1 705 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11881155..11881982 1271..444 4140 100 Minus
3R 32079331 3R 11879700..11880084 2495..2111 1925 100 Minus
3R 32079331 3R 11880453..11880767 1856..1542 1575 100 Minus
3R 32079331 3R 11882035..11882335 445..145 1505 100 Minus
3R 32079331 3R 11880828..11881097 1541..1272 1350 100 Minus
3R 32079331 3R 11880138..11880395 2112..1855 1290 100 Minus
3R 32079331 3R 11882392..11882535 144..1 720 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11621986..11622813 1271..444 4140 100 Minus
3R 31820162 3R 11620531..11620915 2495..2111 1925 100 Minus
3R 31820162 3R 11621284..11621598 1856..1542 1575 100 Minus
3R 31820162 3R 11622866..11623166 445..145 1505 100 Minus
3R 31820162 3R 11621659..11621928 1541..1272 1350 100 Minus
3R 31820162 3R 11620969..11621226 2112..1855 1290 100 Minus
3R 31820162 3R 11623223..11623366 144..1 720 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:34:36 has no hits.

LD28817.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:35:36 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7705188..7705568 2113..2493 100 <- Minus
chr3R 7705624..7705881 1855..2112 99 <- Minus
chr3R 7705941..7706253 1542..1854 100 <- Minus
chr3R 7706314..7706583 1272..1541 99 <- Minus
chr3R 7706641..7707467 445..1271 99 <- Minus
chr3R 7707522..7707821 145..444 99 <- Minus
chr3R 7707878..7708021 1..144 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:38 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
CG6962-RA 1..2304 112..2415 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:14 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
CG6962-RA 1..2304 112..2415 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:31:49 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
CG6962-RA 1..2304 112..2415 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:45 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
CG6962-RA 1..2304 112..2415 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:03 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
CG6962-RA 1..2304 112..2415 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:27 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
CG6962-RA 1..2493 1..2493 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:14 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
CG6962-RA 1..2493 1..2493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:31:49 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
CG6962-RA 1..2492 2..2493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:45 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
CG6962-RA 1..2493 1..2493 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:03 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
CG6962-RA 1..2492 2..2493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:36 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11880828..11881097 1272..1541 100 <- Minus
3R 11879702..11880082 2113..2493 100 <- Minus
3R 11880138..11880395 1855..2112 100 <- Minus
3R 11880455..11880767 1542..1854 100 <- Minus
3R 11881155..11881981 445..1271 100 <- Minus
3R 11882036..11882335 145..444 100 <- Minus
3R 11882392..11882535 1..144 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:36 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11880828..11881097 1272..1541 100 <- Minus
3R 11879702..11880082 2113..2493 100 <- Minus
3R 11880138..11880395 1855..2112 100 <- Minus
3R 11880455..11880767 1542..1854 100 <- Minus
3R 11881155..11881981 445..1271 100 <- Minus
3R 11882036..11882335 145..444 100 <- Minus
3R 11882392..11882535 1..144 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:36 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11880828..11881097 1272..1541 100 <- Minus
3R 11879702..11880082 2113..2493 100 <- Minus
3R 11880138..11880395 1855..2112 100 <- Minus
3R 11880455..11880767 1542..1854 100 <- Minus
3R 11881155..11881981 445..1271 100 <- Minus
3R 11882036..11882335 145..444 100 <- Minus
3R 11882392..11882535 1..144 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:31:49 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7705424..7705804 2113..2493 100 <- Minus
arm_3R 7705860..7706117 1855..2112 100 <- Minus
arm_3R 7706177..7706489 1542..1854 100 <- Minus
arm_3R 7706550..7706819 1272..1541 100 <- Minus
arm_3R 7706877..7707703 445..1271 100 <- Minus
arm_3R 7707758..7708057 145..444 100 <- Minus
arm_3R 7708114..7708257 1..144 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:26 Download gff for LD28817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11621659..11621928 1272..1541 100 <- Minus
3R 11620533..11620913 2113..2493 100 <- Minus
3R 11620969..11621226 1855..2112 100 <- Minus
3R 11621286..11621598 1542..1854 100 <- Minus
3R 11621986..11622812 445..1271 100 <- Minus
3R 11622867..11623166 145..444 100 <- Minus
3R 11623223..11623366 1..144 100   Minus

LD28817.hyp Sequence

Translation from 111 to 2414

> LD28817.hyp
MSQTMPPENLSSRLLTVLSLPLFERVHELSILFDRCSLRQVQEIFPHVVH
SIFGIDGNPLGWGLRTTTLENNPVQFQTLHQFFGVCGPLMHVCHRLLVDQ
YKFELDINLLPAKFVSLLQNGQNPSFYAELINVETMMHQVSTLSLNAFDF
YVIHFVLYALQPLHSINPIAMQIHNVRSKTVYLKLVAEYLNNFLPLLPDA
RIEPVHFSSGVKAPQPLPAQALQPQRQPRYIKIPSSYRNGGNVSGGGGIP
SASVGVGNISPQSNSPSASSNRAYAWRSESVLHFFVDIWLRYDIESEHHL
PSSDFVRGVRTLVKQVHFFANGAQHDHSSLCALRKVSLSMVKARIYAFIV
GLIDRWPLDSSLMVVLELWLSYIQPWRYTIASLNNKTPSLSYRPPISSCF
DGFIIDNLIMYTHIFMQLLPHFGRLDYTVYRNAFMLYRLATIFSQHDLVD
KLQRFEAIHAGNSFGFDSPQRQVNIMNKSVSPGTPWNQAVNISSAKLFSY
TMQTQMETFLLLISMARNSVLRDIAKLRNEIAERQRSEGFLKNFYKKIFG
ECTQEEVTLREFSRIPEVLRQCIDAFCRTFNVDQANLSMHETLPEEPSVP
SAPAVQNFSFFDASDTLDTSKLNPHQMSLNASSLHAAVDPATLPIQTNEV
RALVRMLHFVSEKINNKYGSQLQGFYVRDDYFGKVARQLLYAPMTEQWFD
KSSGHVEICENLVPPRVCLRPLGSIPALTTIGCSMIFGQLVWGAPLLGIF
ILATVLLVYIMLQALFS*

LD28817.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6962-PA 767 CG6962-PA 1..767 1..767 3997 100 Plus

LD28817.pep Sequence

Translation from 111 to 2414

> LD28817.pep
MSQTMPPENLSSRLLTVLSLPLFERVHELSILFDRCSLRQVQEIFPHVVH
SIFGIDGNPLGWGLRTTTLENNPVQFQTLHQFFGVCGPLMHVCHRLLVDQ
YKFELDINLLPAKFVSLLQNGQNPSFYAELINVETMMHQVSTLSLNAFDF
YVIHFVLYALQPLHSINPIAMQIHNVRSKTVYLKLVAEYLNNFLPLLPDA
RIEPVHFSSGVKAPQPLPAQALQPQRQPRYIKIPSSYRNGGNVSGGGGIP
SASVGVGNISPQSNSPSASSNRAYAWRSESVLHFFVDIWLRYDIESEHHL
PSSDFVRGVRTLVKQVHFFANGAQHDHSSLCALRKVSLSMVKARIYAFIV
GLIDRWPLDSSLMVVLELWLSYIQPWRYTIASLNNKTPSLSYRPPISSCF
DGFIIDNLIMYTHIFMQLLPHFGRLDYTVYRNAFMLYRLATIFSQHDLVD
KLQRFEAIHAGNSFGFDSPQRQVNIMNKSVSPGTPWNQAVNISSAKLFSY
TMQTQMETFLLLISMARNSVLRDIAKLRNEIAERQRSEGFLKNFYKKIFG
ECTQEEVTLREFSRIPEVLRQCIDAFCRTFNVDQANLSMHETLPEEPSVP
SAPAVQNFSFFDASDTLDTSKLNPHQMSLNASSLHAAVDPATLPIQTNEV
RALVRMLHFVSEKINNKYGSQLQGFYVRDDYFGKVARQLLYAPMTEQWFD
KSSGHVEICENLVPPRVCLRPLGSIPALTTIGCSMIFGQLVWGAPLLGIF
ILATVLLVYIMLQALFS*

LD28817.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23059-PA 768 GF23059-PA 1..768 1..767 3153 76.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17183-PA 765 GG17183-PA 1..765 1..767 3650 89.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18779-PA 761 GH18779-PA 1..761 1..767 2595 63.2 Plus
Dgri\GH13901-PA 204 GH13901-PA 1..204 564..767 629 56.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6962-PA 767 CG6962-PA 1..767 1..767 3997 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22670-PA 761 GI22670-PA 1..761 1..767 2596 64.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12365-PA 760 GL12365-PA 1..759 1..767 2551 63.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19987-PA 760 GA19987-PA 1..759 1..767 2545 63 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26063-PA 766 GM26063-PA 1..766 1..767 3845 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20627-PA 766 GD20627-PA 1..766 1..767 3847 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23398-PA 761 GJ23398-PA 1..761 1..767 2744 66 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14473-PA 762 GK14473-PA 1..762 1..767 2682 66.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10077-PA 767 GE10077-PA 1..767 1..767 3728 90.5 Plus