Clone LD28822 Report

Search the DGRC for LD28822

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:288
Well:22
Vector:pOT2
Associated Gene/Transcriptmtm-RA
Protein status:LD28822.pep: gold
Preliminary Size:2270
Sequenced Size:2072

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9115 2001-01-01 Release 2 assignment
CG9115 2001-09-19 Blastp of sequenced clone
CG9115 2003-01-01 Sim4 clustering to Release 3
mtm 2008-04-29 Release 5.5 accounting
mtm 2008-08-15 Release 5.9 accounting
mtm 2008-12-18 5.12 accounting

Clone Sequence Records

LD28822.complete Sequence

2072 bp (2072 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058594

> LD28822.complete
AATTGCATTTAGCTAACAATTGGAAAAGAAAACACAGCTGCAACCAGCAA
CACAATAGCCAAACACCACTCGTGTCCATCCGAAAATGGATCCCTCCGCG
AGCCTGGCCGACAAGTTGGCCTCCAAGACTGCCAGCAGCAACTCTCTGGA
CAGCAGCTCCAAGTCCAGTTCGCTGGGCTCCAAGCACGGTGGCGGAGAAA
ACGGCATTCTGCGGGACACGCCCTTCGGCTATCTGGAGGGCGAAGAGGAC
CAGGACCAGAAGAACGACGTGACCTACGTGTGTCCGTACCGCGGCCCCGT
CTTCGGCGCTCTTACCATAACCAACTACCGTCTGTACTTCCGGTCGCTTC
CCCTGCGGGATCAGGAGCCGCCCGTCGTCGTCGACGTGCCTCTGGGCGTG
ATCGCGCGTGTGGAGAAGATTGGAGGTGCCACGTCTCGCGGTGAGAACTC
GTACGGCATCGAGATTTTCTGCAAGGACATGCGAAACCTGCGATTCGCCC
ACAAGCAGCAGAATCATTCGCGGAGGACGGTGTTTGAGAAACTGCAGGCC
AACGCCTTTCCGCTCTCGTACAGTGGGCGCCTCTTTGCATTCGCCCACGC
CGCGGCCAACTCTGTGAACGGTAACGGAGGCTGGGACGGCTGGGCGGTAT
ATGAACCGCTGGCGGAGCTGCGCCGCTTGGGCGTTCCCAACGATATGTGG
CGGGCGACCAAGCTAAACGAGTCCTACGCAATTTGCGACAGCTATCCGGC
CGTGTGGGCTGTGCCCAAAGCGGCCTCCGATGATTTCCTGAGGCGCGTGG
CACAGTTCCGATCGCGCTGCCGCCTGCCGGTTTTGTCCTGGATGAACCCA
CGGACTCAAGCGACCATTACAAGGTGTTCCCAGCCGCTGGTGGGTGTAAG
TGGCAAGCGAAATTCCGACGATGAAGCATACCTAAGCTTTATCATGGAGG
CGAACGCCCAGTCAGACAAGTTGACCATCATGGATGCGCGACCAAGCGCC
AATGCGATTGCTAACAAGGCCAAGGGCGGCGGCTACGAGTCAGAGGACGC
GTACAAGAACGTGGAAATCAACTTCCTCGACATACACAACATCCACGTGA
TGCGGGAGAGCCTACGCAAAGTGAAGGAGGCTTGCTTCCCCACCACCGAC
GACTCAAAGTGGCAGACGGCTATTGACAACACACTGTGGCTAAAGCACAT
TAGGTGCATCCTGGCCGGCGCCGTTAGGATTGTTGACAAGGTGGAGACCA
TGAGCACCTCCGTCGTAGTTCACTGCTCCGACGGCTGGGATCGCACAGCC
CAGCTGACTGCTCTTTCCATGTTGCTGCTCGATCCGCACTATCGCACAGT
GCGCGGTTTCGAGGTTCTCATTGAGAAGGAGTGGCTCTCCTTTGGCCACA
AGTTCCAACAACGCATTGGTCACGGCGACAACAAGCACTCGGATGCAGAC
AGATCTCCGGTGTTCCTGCAATTTATCGATAGCGTCTGGCAGGTTAGCCA
GCAGTTCAACAACGCATTTGAGTTCAACGAGCACTTCCTGATAACCATCG
TGGATCATCTGTACTCGTGCCGCTTCGGCACCTTCCTCTGCAACACGGAG
GCCGAGCGTGTGGCCGAAGATCTCAAGCACAAGACAACATCCCTGTGGAC
GCACATCAACTCGTCGCTGGACCAGTATTTGAATCCACTCTTTCCCTCGT
TCACGCACGGCGCCGAGCTAGTGCTGCGTCCGATTGCCAGCGTGAGATCG
GTCCGCTTGTGGAAGGGCCTATACTGTCGCTGGAATCCTGGTCTGTGCGC
TCCTCAGCATGGCTGCCAGCGAACCCGCGAACTGCTATCCAAGCAGGACC
AGCTCTTTAAGCTCGTCAACGAGCTGCGGCTCAAGTCGAACAACCGCAGC
AACAGCATGCAGACAACTACGCGACTGGCCTCGCCTATGCACTAATAGTA
TTGCTTTTTTATTCCCCCTACTTGTACGCATATGTAGTGCACGTATTGTG
AACTACGTTCTAATTCCAAATAAAAGTTTTTCTTAAATGGAAAACTAAAA
AAAAAAAAAAAAAAAAAAAAAA

LD28822.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
mtm-RA 2215 mtm-RA 89..2135 1..2047 10235 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6034329..6035947 1619..1 8095 100 Minus
chr2L 23010047 chr2L 6033847..6034275 2046..1618 2145 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6035278..6036896 1619..1 8095 100 Minus
2L 23513712 2L 6034795..6035224 2047..1618 2150 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6035278..6036896 1619..1 8095 100 Minus
2L 23513712 2L 6034795..6035224 2047..1618 2150 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:43:58 has no hits.

LD28822.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:44:57 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6033847..6034273 1620..2046 100 <- Minus
chr2L 6034329..6035947 1..1619 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:39 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
mtm-RA 1..1860 86..1945 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:19 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
mtm-RA 1..1860 86..1945 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:20:25 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
mtm-RA 1..1860 86..1945 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:28 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
mtm-RA 1..1860 86..1945 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:32 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
mtm-RA 1..1860 86..1945 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:48 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
mtm-RA 25..2070 1..2046 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:19 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
mtm-RA 25..2070 1..2046 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:20:25 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
mtm-RA 42..2087 1..2046 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:28 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
mtm-RA 25..2070 1..2046 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:32 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
mtm-RA 22..2067 1..2046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:57 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6034796..6035222 1620..2046 100 <- Minus
2L 6035278..6036896 1..1619 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:57 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6034796..6035222 1620..2046 100 <- Minus
2L 6035278..6036896 1..1619 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:57 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6034796..6035222 1620..2046 100 <- Minus
2L 6035278..6036896 1..1619 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:20:25 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6034796..6035222 1620..2046 100 <- Minus
arm_2L 6035278..6036896 1..1619 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:37 Download gff for LD28822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6034796..6035222 1620..2046 100 <- Minus
2L 6035278..6036896 1..1619 100   Minus

LD28822.pep Sequence

Translation from 85 to 1944

> LD28822.pep
MDPSASLADKLASKTASSNSLDSSSKSSSLGSKHGGGENGILRDTPFGYL
EGEEDQDQKNDVTYVCPYRGPVFGALTITNYRLYFRSLPLRDQEPPVVVD
VPLGVIARVEKIGGATSRGENSYGIEIFCKDMRNLRFAHKQQNHSRRTVF
EKLQANAFPLSYSGRLFAFAHAAANSVNGNGGWDGWAVYEPLAELRRLGV
PNDMWRATKLNESYAICDSYPAVWAVPKAASDDFLRRVAQFRSRCRLPVL
SWMNPRTQATITRCSQPLVGVSGKRNSDDEAYLSFIMEANAQSDKLTIMD
ARPSANAIANKAKGGGYESEDAYKNVEINFLDIHNIHVMRESLRKVKEAC
FPTTDDSKWQTAIDNTLWLKHIRCILAGAVRIVDKVETMSTSVVVHCSDG
WDRTAQLTALSMLLLDPHYRTVRGFEVLIEKEWLSFGHKFQQRIGHGDNK
HSDADRSPVFLQFIDSVWQVSQQFNNAFEFNEHFLITIVDHLYSCRFGTF
LCNTEAERVAEDLKHKTTSLWTHINSSLDQYLNPLFPSFTHGAELVLRPI
ASVRSVRLWKGLYCRWNPGLCAPQHGCQRTRELLSKQDQLFKLVNELRLK
SNNRSNSMQTTTRLASPMH*

LD28822.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14283-PA 619 GF14283-PA 1..619 1..619 3024 95 Plus
Dana\GF11853-PA 761 GF11853-PA 93..574 69..570 891 39.2 Plus
Dana\GF19035-PA 1120 GF19035-PA 52..611 74..563 758 32.6 Plus
Dana\GF24368-PA 622 GF24368-PA 216..614 205..610 444 29 Plus
Dana\GF16615-PA 1966 GF16615-PA 1327..1636 304..560 359 30.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10145-PA 619 GG10145-PA 1..619 1..619 3355 99.8 Plus
Dere\GG20035-PA 761 GG20035-PA 93..574 69..570 887 39 Plus
Dere\GG17949-PA 1075 GG17949-PA 163..578 142..513 684 35.1 Plus
Dere\GG14362-PA 622 GG14362-PA 216..602 205..598 448 29.9 Plus
Dere\GG17190-PA 1974 GG17190-PA 1344..1546 318..508 351 36 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10708-PA 613 GH10708-PA 1..612 1..618 2932 90.3 Plus
Dgri\GH20661-PA 764 GH20661-PA 92..573 69..570 890 39.4 Plus
Dgri\GH12561-PA 1219 GH12561-PA 52..598 74..563 745 32.7 Plus
Dgri\GH16535-PA 622 GH16535-PA 216..570 205..566 455 31.6 Plus
Dgri\GH23138-PA 1972 GH23138-PA 1364..1547 331..508 352 38 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
mtm-PB 619 CG9115-PB 1..619 1..619 3277 100 Plus
mtm-PA 619 CG9115-PA 1..619 1..619 3277 100 Plus
CG3530-PC 639 CG3530-PC 3..452 106..570 857 40.3 Plus
CG3530-PB 689 CG3530-PB 53..502 106..570 857 40.3 Plus
CG3530-PA 761 CG3530-PA 125..574 106..570 857 40.3 Plus
CG3632-PJ 1119 CG3632-PJ 216..632 194..563 730 36.7 Plus
CG3632-PI 1241 CG3632-PI 216..632 194..563 730 36.7 Plus
CG3632-PH 1241 CG3632-PH 216..632 194..563 730 36.7 Plus
CG3632-PG 1241 CG3632-PG 216..632 194..563 730 36.7 Plus
CG3632-PF 1241 CG3632-PF 216..632 194..563 730 36.7 Plus
CG3632-PE 1250 CG3632-PE 225..641 194..563 730 36.7 Plus
CG5026-PC 620 CG5026-PC 196..600 179..598 457 30 Plus
CG5026-PB 620 CG5026-PB 196..600 179..598 457 30 Plus
CG5026-PA 620 CG5026-PA 196..600 179..598 457 30 Plus
Sbf-PB 1973 CG6939-PB 1344..1546 318..508 340 36 Plus
Sbf-PA 1993 CG6939-PA 1364..1566 318..508 340 36 Plus
CG14411-PD 843 CG14411-PD 210..589 125..509 305 26.8 Plus
CG14411-PC 843 CG14411-PC 210..589 125..509 305 26.8 Plus
CG14411-PB 843 CG14411-PB 210..589 125..509 305 26.8 Plus
CG14411-PA 843 CG14411-PA 210..589 125..509 305 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11288-PA 624 GI11288-PA 1..624 1..619 3006 92.7 Plus
Dmoj\GI19024-PA 760 GI19024-PA 92..573 69..570 886 39.2 Plus
Dmoj\GI11214-PA 766 GI11214-PA 1..264 295..563 619 42 Plus
Dmoj\GI13823-PA 614 GI13823-PA 208..562 205..566 450 31.5 Plus
Dmoj\GI10301-PA 1974 GI10301-PA 1364..1644 331..559 361 31.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19086-PA 579 GL19086-PA 1..579 1..619 2820 89.3 Plus
Dper\GL17566-PA 760 GL17566-PA 93..574 69..570 901 39.4 Plus
Dper\GL21339-PA 1215 GL21339-PA 371..634 295..563 624 42.8 Plus
Dper\GL12246-PA 1978 GL12246-PA 1349..1551 318..508 356 36.9 Plus
Dper\GL15069-PA 570 GL15069-PA 211..492 205..493 331 30.6 Plus
Dper\GL21339-PA 1215 GL21339-PA 211..309 194..291 181 40.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21553-PA 619 GA21553-PA 1..619 1..619 3261 96.3 Plus
Dpse\GA17504-PB 677 GA17504-PB 8..489 69..570 902 39.4 Plus
Dpse\GA17504-PA 762 GA17504-PA 93..574 69..570 901 39.4 Plus
Dpse\GA22870-PB 1178 GA22870-PB 371..634 295..563 624 42.8 Plus
Dpse\GA18604-PA 617 GA18604-PA 211..597 205..598 464 30.4 Plus
Dpse\GA22870-PB 1178 GA22870-PB 211..309 194..291 182 40.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17970-PA 416 GM17970-PA 1..416 204..619 2263 100 Plus
Dsec\GM17969-PA 189 GM17969-PA 1..187 1..187 990 98.4 Plus
Dsec\GM15548-PA 689 GM15548-PA 21..502 69..570 891 39 Plus
Dsec\GM13419-PA 1010 GM13419-PA 225..596 194..513 680 37.4 Plus
Dsec\GM25107-PA 616 GM25107-PA 210..611 205..613 459 29.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22607-PA 556 GD22607-PA 119..556 182..619 2392 100 Plus
Dsim\GD25052-PA 761 GD25052-PA 93..574 69..570 883 38.8 Plus
Dsim\GD17273-PA 1012 GD17273-PA 225..596 194..513 680 37.4 Plus
Dsim\GD22607-PA 556 GD22607-PA 1..135 1..135 547 89.6 Plus
Dsim\GD14143-PA 620 GD14143-PA 214..615 205..613 457 29.3 Plus
Dsim\GD20634-PA 1973 GD20634-PA 1344..1546 318..508 350 36 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12474-PA 623 GJ12474-PA 1..623 1..619 3044 94.6 Plus
Dvir\GJ19990-PA 760 GJ19990-PA 92..573 69..570 893 39.4 Plus
Dvir\GJ18508-PA 1150 GJ18508-PA 195..599 194..563 739 36.8 Plus
Dvir\GJ11690-PA 611 GJ11690-PA 205..608 205..608 465 30.6 Plus
Dvir\GJ10154-PA 1979 GJ10154-PA 1369..1652 331..563 366 31.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15399-PA 620 GK15399-PA 1..620 1..619 3044 93.4 Plus
Dwil\GK23060-PA 762 GK23060-PA 93..574 69..570 908 39.6 Plus
Dwil\GK25720-PA 1287 GK25720-PA 368..631 295..563 618 42.4 Plus
Dwil\GK12345-PA 623 GK12345-PA 211..614 200..610 471 29.7 Plus
Dwil\GK14310-PA 2000 GK14310-PA 1375..1558 331..508 354 39.1 Plus
Dwil\GK25720-PA 1287 GK25720-PA 199..297 194..291 179 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18955-PA 619 GE18955-PA 1..619 1..619 3354 99.7 Plus
Dyak\GE11572-PA 689 GE11572-PA 21..502 69..570 888 39 Plus
Dyak\GE11013-PA 857 GE11013-PA 223..594 194..513 679 37.4 Plus
Dyak\GE20794-PA 621 GE20794-PA 215..601 205..598 447 29.9 Plus
Dyak\GE10084-PA 1973 GE10084-PA 1344..1546 318..508 350 36 Plus

LD28822.hyp Sequence

Translation from 85 to 1944

> LD28822.hyp
MDPSASLADKLASKTASSNSLDSSSKSSSLGSKHGGGENGILRDTPFGYL
EGEEDQDQKNDVTYVCPYRGPVFGALTITNYRLYFRSLPLRDQEPPVVVD
VPLGVIARVEKIGGATSRGENSYGIEIFCKDMRNLRFAHKQQNHSRRTVF
EKLQANAFPLSYSGRLFAFAHAAANSVNGNGGWDGWAVYEPLAELRRLGV
PNDMWRATKLNESYAICDSYPAVWAVPKAASDDFLRRVAQFRSRCRLPVL
SWMNPRTQATITRCSQPLVGVSGKRNSDDEAYLSFIMEANAQSDKLTIMD
ARPSANAIANKAKGGGYESEDAYKNVEINFLDIHNIHVMRESLRKVKEAC
FPTTDDSKWQTAIDNTLWLKHIRCILAGAVRIVDKVETMSTSVVVHCSDG
WDRTAQLTALSMLLLDPHYRTVRGFEVLIEKEWLSFGHKFQQRIGHGDNK
HSDADRSPVFLQFIDSVWQVSQQFNNAFEFNEHFLITIVDHLYSCRFGTF
LCNTEAERVAEDLKHKTTSLWTHINSSLDQYLNPLFPSFTHGAELVLRPI
ASVRSVRLWKGLYCRWNPGLCAPQHGCQRTRELLSKQDQLFKLVNELRLK
SNNRSNSMQTTTRLASPMH*

LD28822.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
mtm-PB 619 CG9115-PB 1..619 1..619 3277 100 Plus
mtm-PA 619 CG9115-PA 1..619 1..619 3277 100 Plus
CG3530-PC 639 CG3530-PC 3..452 106..570 857 40.3 Plus
CG3530-PB 689 CG3530-PB 53..502 106..570 857 40.3 Plus
CG3530-PA 761 CG3530-PA 125..574 106..570 857 40.3 Plus