![]() | BDGP Sequence Production Resources |
Search the DGRC for LD28904
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 289 |
Well: | 4 |
Vector: | pOT2 |
Associated Gene/Transcript | Uev1A-RA |
Protein status: | LD28904.pep: gold |
Preliminary Size: | 1419 |
Sequenced Size: | 1189 |
Gene | Date | Evidence |
---|---|---|
CG10640 | 2001-01-01 | Release 2 assignment |
CG10640 | 2001-09-19 | Blastp of sequenced clone |
CG10640 | 2003-01-01 | Sim4 clustering to Release 3 |
Uev1A | 2008-04-29 | Release 5.5 accounting |
Uev1A | 2008-08-15 | Release 5.9 accounting |
Uev1A | 2008-12-18 | 5.12 accounting |
1189 bp (1189 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060384
> LD28904.complete CCACAATGGCGAATACATCAAGTACCGGCGTTGTGGTGCCACGGAATTTC CGCTTACTGGAGGAGCTGGATCAGGGCCAGAAGGGCGTGGGCGATGGCAC CATATCGTGGGGCCTGGAGAACGACGACGACATGACGCTCACCTACTGGA TCGGCATGATCATCGGTCCGCCTAGAACACCATTCGAGAATCGAATGTAT TCACTAAAGATCGAGTGCGGCGAACGCTATCCGGATGAGCCACCAACGCT CCGGTTTATAACTAAAGTAAACATTAACTGCATTAATCAGAACAATGGCG TGGTTGATCATAGATCAGTTCAGATGTTGGCCAGATGGAGTCGCGAGTAC AATATAAAAACGATGCTGCAGGAAATCCGTAGGATTATGACCATGAAAGA GAACCTGAAGCTGGCACAGCCGCCAGAAGGTAGCTGTTTTTAGTCGACAA CATCCGTTAGCAACACCAGCAGCAGCTGCAACAGCATCGAATGCAACGCG AGCGGGAGCAGCATCCACACCCAGTAAGAGCCGGAAAACGAACCACCATC ATCAGTCCAAAAGTCCAAGACCAAGGTGGCCACACGTGCGTGGAATTAAA AAGAGATTGTGTGGCGGCTGCTCCGCCGAGTTGCCATCGGTGGCAGCGTA TGCTTATTAATGAACGTAATAAAGATCGAGTGCGGTTATTGTGGCAAGAA CAACAACCAAATGCAAGCTATATACTATAAGTAAAGGGAACAGCAGCGAA AAATGCGATAGGAGCGTCACTATGAAGAGGTCGTCGTCGTCCCTTCCGTC ATGAACTATGTCATCGTGTTTGGTTACCTTACTCTTCTTACTACTTCAAC TTCAGTCCCCAAACAAAACGAAACGAAAATATGAGAACTTCTTTTGAATA AGAAATAAAACAGCAGCAAAAGAAACAAGTTAAATGCCTGAATGTTTCAG ATTCAAAACTTCAAATCGAAAATTCGTAAACTAATCGAACAGAAAAGTAA TGCATAACAATGATAACGATTAATCAAGATCACAGCGTGAGATCCGAGCG TAATTATTGTTTTTTTTTGCCTAAACTAAAAATTTATTAATTATATACAT AAAGCAAAATATATATTAATTTAAATAAAACCAACATGTCGAACACAATT TTTGTAGACGGCGCCAGTAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 5355727..5356592 | 1168..302 | 4240 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 5357516..5357659 | 176..33 | 720 | 100 | Minus |
chr3L | 24539361 | chr3L | 5356658..5356785 | 304..177 | 640 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 5356249..5357116 | 1169..302 | 4340 | 100 | Minus |
3L | 28103327 | 3L | 5358043..5358186 | 176..33 | 720 | 100 | Minus |
3L | 28103327 | 3L | 5357182..5357309 | 304..177 | 640 | 100 | Minus |
3L | 28103327 | 3L | 5359229..5359261 | 33..1 | 165 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6954 | 445..557 | 123 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1578 | 444..488 | 114 | 75.6 | Plus |
Ddip\Bari1 | 1677 | Ddip\Bari1 DDBARI1 1676bp Derived from Y13852. | 1334..1592 | 1121..870 | 114 | 55.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1615 | 470..564 | 113 | 63 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 5355819..5356591 | 303..1076 | 99 | <- | Minus |
chr3L | 5356660..5356785 | 177..302 | 100 | <- | Minus |
chr3L | 5357516..5357658 | 34..176 | 100 | <- | Minus |
chr3L | 5358719..5358751 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Uev1A-RA | 1..438 | 6..443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Uev1A-RA | 1..438 | 6..443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Uev1A-RA | 1..438 | 6..443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Uev1A-RA | 1..438 | 6..443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Uev1A-RA | 1..438 | 6..443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Uev1A-RA | 65..1230 | 1..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Uev1A-RA | 65..1230 | 1..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Uev1A-RA | 65..1232 | 1..1168 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Uev1A-RA | 65..1230 | 1..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Uev1A-RC | 22..1189 | 1..1168 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5363150..5364015 | 303..1168 | 100 | <- | Minus |
3L | 5364084..5364209 | 177..302 | 100 | <- | Minus |
3L | 5364943..5365085 | 34..176 | 100 | <- | Minus |
3L | 5366129..5366161 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5363150..5364015 | 303..1168 | 100 | <- | Minus |
3L | 5364084..5364209 | 177..302 | 100 | <- | Minus |
3L | 5364943..5365085 | 34..176 | 100 | <- | Minus |
3L | 5366129..5366161 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5363150..5364015 | 303..1168 | 100 | <- | Minus |
3L | 5364084..5364209 | 177..302 | 100 | <- | Minus |
3L | 5364943..5365085 | 34..176 | 100 | <- | Minus |
3L | 5366129..5366161 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 5356250..5357115 | 303..1168 | 100 | <- | Minus |
arm_3L | 5357184..5357309 | 177..302 | 100 | <- | Minus |
arm_3L | 5358043..5358185 | 34..176 | 100 | <- | Minus |
arm_3L | 5359229..5359261 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5356250..5357115 | 303..1168 | 100 | <- | Minus |
3L | 5357184..5357309 | 177..302 | 100 | <- | Minus |
3L | 5358043..5358185 | 34..176 | 100 | <- | Minus |
3L | 5359229..5359261 | 1..33 | 100 | Minus |
Translation from 2 to 442
> LD28904.hyp TMANTSSTGVVVPRNFRLLEELDQGQKGVGDGTISWGLENDDDMTLTYWI GMIIGPPRTPFENRMYSLKIECGERYPDEPPTLRFITKVNINCINQNNGV VDHRSVQMLARWSREYNIKTMLQEIRRIMTMKENLKLAQPPEGSCF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Uev1A-PC | 145 | CG10640-PC | 1..145 | 2..146 | 777 | 100 | Plus |
Uev1A-PA | 145 | CG10640-PA | 1..145 | 2..146 | 777 | 100 | Plus |
Uev1A-PB | 103 | CG10640-PB | 1..103 | 44..146 | 557 | 100 | Plus |
Ubc6-PC | 151 | CG2013-PC | 30..114 | 43..130 | 140 | 33.7 | Plus |
Ubc6-PA | 151 | CG2013-PA | 30..114 | 43..130 | 140 | 33.7 | Plus |
Translation from 5 to 442
> LD28904.pep MANTSSTGVVVPRNFRLLEELDQGQKGVGDGTISWGLENDDDMTLTYWIG MIIGPPRTPFENRMYSLKIECGERYPDEPPTLRFITKVNINCINQNNGVV DHRSVQMLARWSREYNIKTMLQEIRRIMTMKENLKLAQPPEGSCF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10466-PA | 145 | GF10466-PA | 1..145 | 1..145 | 757 | 97.2 | Plus |
Dana\GF16080-PA | 151 | GF16080-PA | 3..114 | 11..129 | 148 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14135-PA | 145 | GG14135-PA | 1..145 | 1..145 | 775 | 100 | Plus |
Dere\GG11277-PA | 151 | GG11277-PA | 3..114 | 11..129 | 148 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15269-PA | 145 | GH15269-PA | 1..145 | 1..145 | 756 | 97.2 | Plus |
Dgri\GH15302-PA | 151 | GH15302-PA | 3..114 | 11..129 | 148 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Uev1A-PC | 145 | CG10640-PC | 1..145 | 1..145 | 777 | 100 | Plus |
Uev1A-PA | 145 | CG10640-PA | 1..145 | 1..145 | 777 | 100 | Plus |
Uev1A-PB | 103 | CG10640-PB | 1..103 | 43..145 | 557 | 100 | Plus |
Ubc6-PC | 151 | CG2013-PC | 30..114 | 42..129 | 140 | 33.7 | Plus |
Ubc6-PA | 151 | CG2013-PA | 30..114 | 42..129 | 140 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11977-PA | 145 | GI11977-PA | 1..145 | 1..145 | 753 | 96.6 | Plus |
Dmoj\GI22506-PA | 151 | GI22506-PA | 3..114 | 11..129 | 148 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12148-PA | 145 | GL12148-PA | 1..145 | 1..145 | 751 | 96.6 | Plus |
Dper\GL24789-PA | 85 | GL24789-PA | 1..82 | 1..82 | 428 | 97.6 | Plus |
Dper\GL22213-PA | 151 | GL22213-PA | 3..114 | 11..129 | 148 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10461-PA | 145 | GA10461-PA | 1..145 | 1..145 | 751 | 96.6 | Plus |
Dpse\GA15184-PA | 151 | GA15184-PA | 3..114 | 11..129 | 148 | 30 | Plus |
Dpse\GA15184-PB | 118 | GA15184-PB | 3..81 | 48..129 | 144 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13922-PA | 145 | GM13922-PA | 1..145 | 1..145 | 775 | 100 | Plus |
Dsec\GM10669-PA | 151 | GM10669-PA | 3..114 | 11..129 | 148 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13202-PA | 145 | GD13202-PA | 1..145 | 1..145 | 775 | 100 | Plus |
Dsim\GD19645-PA | 151 | GD19645-PA | 3..114 | 11..129 | 148 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12202-PA | 145 | GJ12202-PA | 1..145 | 1..145 | 753 | 96.6 | Plus |
Dvir\GJ10109-PA | 151 | GJ10109-PA | 3..114 | 11..129 | 148 | 30 | Plus |