Clone LD28904 Report

Search the DGRC for LD28904

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:289
Well:4
Vector:pOT2
Associated Gene/TranscriptUev1A-RA
Protein status:LD28904.pep: gold
Preliminary Size:1419
Sequenced Size:1189

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10640 2001-01-01 Release 2 assignment
CG10640 2001-09-19 Blastp of sequenced clone
CG10640 2003-01-01 Sim4 clustering to Release 3
Uev1A 2008-04-29 Release 5.5 accounting
Uev1A 2008-08-15 Release 5.9 accounting
Uev1A 2008-12-18 5.12 accounting

Clone Sequence Records

LD28904.complete Sequence

1189 bp (1189 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060384

> LD28904.complete
CCACAATGGCGAATACATCAAGTACCGGCGTTGTGGTGCCACGGAATTTC
CGCTTACTGGAGGAGCTGGATCAGGGCCAGAAGGGCGTGGGCGATGGCAC
CATATCGTGGGGCCTGGAGAACGACGACGACATGACGCTCACCTACTGGA
TCGGCATGATCATCGGTCCGCCTAGAACACCATTCGAGAATCGAATGTAT
TCACTAAAGATCGAGTGCGGCGAACGCTATCCGGATGAGCCACCAACGCT
CCGGTTTATAACTAAAGTAAACATTAACTGCATTAATCAGAACAATGGCG
TGGTTGATCATAGATCAGTTCAGATGTTGGCCAGATGGAGTCGCGAGTAC
AATATAAAAACGATGCTGCAGGAAATCCGTAGGATTATGACCATGAAAGA
GAACCTGAAGCTGGCACAGCCGCCAGAAGGTAGCTGTTTTTAGTCGACAA
CATCCGTTAGCAACACCAGCAGCAGCTGCAACAGCATCGAATGCAACGCG
AGCGGGAGCAGCATCCACACCCAGTAAGAGCCGGAAAACGAACCACCATC
ATCAGTCCAAAAGTCCAAGACCAAGGTGGCCACACGTGCGTGGAATTAAA
AAGAGATTGTGTGGCGGCTGCTCCGCCGAGTTGCCATCGGTGGCAGCGTA
TGCTTATTAATGAACGTAATAAAGATCGAGTGCGGTTATTGTGGCAAGAA
CAACAACCAAATGCAAGCTATATACTATAAGTAAAGGGAACAGCAGCGAA
AAATGCGATAGGAGCGTCACTATGAAGAGGTCGTCGTCGTCCCTTCCGTC
ATGAACTATGTCATCGTGTTTGGTTACCTTACTCTTCTTACTACTTCAAC
TTCAGTCCCCAAACAAAACGAAACGAAAATATGAGAACTTCTTTTGAATA
AGAAATAAAACAGCAGCAAAAGAAACAAGTTAAATGCCTGAATGTTTCAG
ATTCAAAACTTCAAATCGAAAATTCGTAAACTAATCGAACAGAAAAGTAA
TGCATAACAATGATAACGATTAATCAAGATCACAGCGTGAGATCCGAGCG
TAATTATTGTTTTTTTTTGCCTAAACTAAAAATTTATTAATTATATACAT
AAAGCAAAATATATATTAATTTAAATAAAACCAACATGTCGAACACAATT
TTTGTAGACGGCGCCAGTAAAAAAAAAAAAAAAAAAAAA

LD28904.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RA 1565 Uev1A-RA 158..1326 1..1169 5845 100 Plus
Uev1A-RB 1452 Uev1A-RB 171..1307 33..1169 5685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5355727..5356592 1168..302 4240 99.5 Minus
chr3L 24539361 chr3L 5357516..5357659 176..33 720 100 Minus
chr3L 24539361 chr3L 5356658..5356785 304..177 640 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5363149..5364016 1169..302 4340 100 Minus
3L 28110227 3L 5364943..5365086 176..33 720 100 Minus
3L 28110227 3L 5364082..5364209 304..177 640 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5356249..5357116 1169..302 4340 100 Minus
3L 28103327 3L 5358043..5358186 176..33 720 100 Minus
3L 28103327 3L 5357182..5357309 304..177 640 100 Minus
3L 28103327 3L 5359229..5359261 33..1 165 100 Minus
Blast to na_te.dros performed 2019-03-16 10:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6842..6954 445..557 123 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1535..1578 444..488 114 75.6 Plus
Ddip\Bari1 1677 Ddip\Bari1 DDBARI1 1676bp Derived from Y13852. 1334..1592 1121..870 114 55.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1615 470..564 113 63 Plus

LD28904.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:45:02 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5355819..5356591 303..1076 99 <- Minus
chr3L 5356660..5356785 177..302 100 <- Minus
chr3L 5357516..5357658 34..176 100 <- Minus
chr3L 5358719..5358751 1..33 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:47 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 1..438 6..443 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:15 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 1..438 6..443 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:21:03 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 1..438 6..443 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:46 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 1..438 6..443 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:44 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 1..438 6..443 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:29 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 65..1230 1..1166 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:15 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 65..1230 1..1166 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:21:03 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 65..1232 1..1168 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:46 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 65..1230 1..1166 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:44 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RC 22..1189 1..1168 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:45:02 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5363150..5364015 303..1168 100 <- Minus
3L 5364084..5364209 177..302 100 <- Minus
3L 5364943..5365085 34..176 100 <- Minus
3L 5366129..5366161 1..33 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:45:02 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5363150..5364015 303..1168 100 <- Minus
3L 5364084..5364209 177..302 100 <- Minus
3L 5364943..5365085 34..176 100 <- Minus
3L 5366129..5366161 1..33 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:45:02 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5363150..5364015 303..1168 100 <- Minus
3L 5364084..5364209 177..302 100 <- Minus
3L 5364943..5365085 34..176 100 <- Minus
3L 5366129..5366161 1..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:21:03 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5356250..5357115 303..1168 100 <- Minus
arm_3L 5357184..5357309 177..302 100 <- Minus
arm_3L 5358043..5358185 34..176 100 <- Minus
arm_3L 5359229..5359261 1..33 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:28 Download gff for LD28904.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5356250..5357115 303..1168 100 <- Minus
3L 5357184..5357309 177..302 100 <- Minus
3L 5358043..5358185 34..176 100 <- Minus
3L 5359229..5359261 1..33 100   Minus

LD28904.hyp Sequence

Translation from 2 to 442

> LD28904.hyp
TMANTSSTGVVVPRNFRLLEELDQGQKGVGDGTISWGLENDDDMTLTYWI
GMIIGPPRTPFENRMYSLKIECGERYPDEPPTLRFITKVNINCINQNNGV
VDHRSVQMLARWSREYNIKTMLQEIRRIMTMKENLKLAQPPEGSCF*

LD28904.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-PC 145 CG10640-PC 1..145 2..146 777 100 Plus
Uev1A-PA 145 CG10640-PA 1..145 2..146 777 100 Plus
Uev1A-PB 103 CG10640-PB 1..103 44..146 557 100 Plus
Ubc6-PC 151 CG2013-PC 30..114 43..130 140 33.7 Plus
Ubc6-PA 151 CG2013-PA 30..114 43..130 140 33.7 Plus

LD28904.pep Sequence

Translation from 5 to 442

> LD28904.pep
MANTSSTGVVVPRNFRLLEELDQGQKGVGDGTISWGLENDDDMTLTYWIG
MIIGPPRTPFENRMYSLKIECGERYPDEPPTLRFITKVNINCINQNNGVV
DHRSVQMLARWSREYNIKTMLQEIRRIMTMKENLKLAQPPEGSCF*

LD28904.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10466-PA 145 GF10466-PA 1..145 1..145 757 97.2 Plus
Dana\GF16080-PA 151 GF16080-PA 3..114 11..129 148 30 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14135-PA 145 GG14135-PA 1..145 1..145 775 100 Plus
Dere\GG11277-PA 151 GG11277-PA 3..114 11..129 148 30 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15269-PA 145 GH15269-PA 1..145 1..145 756 97.2 Plus
Dgri\GH15302-PA 151 GH15302-PA 3..114 11..129 148 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-PC 145 CG10640-PC 1..145 1..145 777 100 Plus
Uev1A-PA 145 CG10640-PA 1..145 1..145 777 100 Plus
Uev1A-PB 103 CG10640-PB 1..103 43..145 557 100 Plus
Ubc6-PC 151 CG2013-PC 30..114 42..129 140 33.7 Plus
Ubc6-PA 151 CG2013-PA 30..114 42..129 140 33.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11977-PA 145 GI11977-PA 1..145 1..145 753 96.6 Plus
Dmoj\GI22506-PA 151 GI22506-PA 3..114 11..129 148 30 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12148-PA 145 GL12148-PA 1..145 1..145 751 96.6 Plus
Dper\GL24789-PA 85 GL24789-PA 1..82 1..82 428 97.6 Plus
Dper\GL22213-PA 151 GL22213-PA 3..114 11..129 148 30 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10461-PA 145 GA10461-PA 1..145 1..145 751 96.6 Plus
Dpse\GA15184-PA 151 GA15184-PA 3..114 11..129 148 30 Plus
Dpse\GA15184-PB 118 GA15184-PB 3..81 48..129 144 34.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13922-PA 145 GM13922-PA 1..145 1..145 775 100 Plus
Dsec\GM10669-PA 151 GM10669-PA 3..114 11..129 148 30 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13202-PA 145 GD13202-PA 1..145 1..145 775 100 Plus
Dsim\GD19645-PA 151 GD19645-PA 3..114 11..129 148 30 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12202-PA 145 GJ12202-PA 1..145 1..145 753 96.6 Plus
Dvir\GJ10109-PA 151 GJ10109-PA 3..114 11..129 148 30 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17319-PA 147 GK17319-PA 1..147 1..145 744 95.9 Plus
Dwil\GK14053-PA 151 GK14053-PA 3..114 11..129 148 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Uev1A-PA 145 GE20564-PA 1..145 1..145 775 100 Plus
Dyak\GE25319-PA 151 GE25319-PA 3..114 11..129 148 30 Plus