BDGP Sequence Production Resources |
Search the DGRC for LD28933
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 289 |
Well: | 33 |
Vector: | pOT2 |
Associated Gene/Transcript | fwe-RA |
Protein status: | LD28933.pep: gold |
Preliminary Size: | 1561 |
Sequenced Size: | 1312 |
Gene | Date | Evidence |
---|---|---|
CG6151 | 2001-01-01 | Release 2 assignment |
CG6151 | 2001-09-19 | Blastp of sequenced clone |
CG6151 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6151 | 2008-04-29 | Release 5.5 accounting |
CG6151 | 2008-08-15 | Release 5.9 accounting |
CG6151 | 2008-12-18 | 5.12 accounting |
1312 bp (1312 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060385
> LD28933.complete TTCGCGTGCAGCAGAACGCAAAGTACAACAGGATTTTTTTCGTTCCGTGT GACGTGAAAAGTGCAAATAGTAATTGTTCGAATTAGTTTAAGCCTAGCTA ACTAACTAAATAAATAGCCATGTCGTTTGCGGAAAAGATAACGGGTCTGC TGGCACGGCCGAATCAACAAGATCCAATTGGACCGGAGCAGCCGTGGTAT CTCAAATATGGAAGTCGATTGCTGGGCATTGTGGCCGCCTTCTTTGCCAT TCTTTTCGGCCTGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATCCT GCCTGGTGGCTGGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGCTC TTGGAGGCTCCCTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATCGC GGAAAAGGTGGAATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACATTG CCATGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTATTC GGCAGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCGTT AGGCAAGAAAGCATCCGCCGAGGACATGCGGGCAGCTGCTCAGCAAACCT TCGGAGGAAACACACCTGCCCAAACCAACGATCGAGCGGGGATTGTGAAC AACGCCCAGCCCTTCTCCTTCACCGGTGCCGTGGGCACGGACAGCAATGT GTGATTCAGAAGCTAGCTGATCGGGATTTCGAGGAATCGAAGAGCTGGGT GTGCCGTGAGAAAACAAGACTCAAAACGCAACATTTGAAGGGCAAACCTA ACCAAGAGAACATCGGCAGGCAATCATAAACATAATCATGTGCAATTTCT GATTGTTCAATAACCAACGCAAATGGATAACAAAAGTTTTTAAATCCGAT TAGCTCTGATCTCTTTCTAGAGCAATCCAAATTACTCGATCAGAAAGAAG CCACCCAAAACAAGATCATTAAATTTTAAACCATTTTTGTATTAAATGTA TGTAAATGTATATTGGTTTTAAAAGCGTTTTGCGTTTTCTGTATCCTATT AATTAATTGTGTTGCCTGTGTCCCATCATTCCAAAACATTTGGTTTCAAC TAAGTAGAAATTGCAAATAAATTATTGAACGACATCACTAGCGAGGTGAA AAAAAAGATCATGTAAAATTTATGTTTAGTCATAGTTTAAATATACCTTA AATATATTTAAATGCATAATACTAAAATGTTTAAATTAATGCAAATAACA CTATAAATATTGTATGTAAACCATATTAAAATTGAATTAAAGATAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 15799941..15800672 | 1291..560 | 3660 | 100 | Minus |
chr3L | 24539361 | chr3L | 15803243..15803450 | 451..244 | 1040 | 100 | Minus |
chr3L | 24539361 | chr3L | 15805760..15805881 | 243..122 | 610 | 100 | Minus |
chr3L | 24539361 | chr3L | 15806098..15806219 | 122..1 | 610 | 100 | Minus |
chr3L | 24539361 | chr3L | 15803070..15803177 | 559..452 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 15810113..15810848 | 1295..560 | 3680 | 100 | Minus |
3L | 28110227 | 3L | 15813419..15813626 | 451..244 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 15815936..15816057 | 243..122 | 610 | 100 | Minus |
3L | 28110227 | 3L | 15816274..15816395 | 122..1 | 610 | 100 | Minus |
3L | 28110227 | 3L | 15813246..15813353 | 559..452 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15803213..15803948 | 1295..560 | 3680 | 100 | Minus |
3L | 28103327 | 3L | 15806519..15806726 | 451..244 | 1040 | 100 | Minus |
3L | 28103327 | 3L | 15809374..15809495 | 122..1 | 610 | 100 | Minus |
3L | 28103327 | 3L | 15809036..15809157 | 243..122 | 610 | 100 | Minus |
3L | 28103327 | 3L | 15806346..15806453 | 559..452 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 555..717 | 1062..898 | 127 | 57.4 | Minus |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 531..672 | 1109..973 | 120 | 58.7 | Minus |
1360 | 3409 | 1360 1360 3409bp | 2966..3055 | 1063..969 | 111 | 62.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15799960..15800672 | 560..1272 | 100 | <- | Minus |
chr3L | 15803070..15803177 | 452..559 | 100 | <- | Minus |
chr3L | 15803243..15803450 | 244..451 | 100 | <- | Minus |
chr3L | 15805760..15805880 | 123..243 | 100 | <- | Minus |
chr3L | 15806098..15806219 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6151-RA | 1..585 | 120..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
flower-RA | 1..585 | 120..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RA | 1..585 | 120..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6151-RA | 1..585 | 120..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RA | 1..585 | 120..704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6151-RA | 15..1308 | 1..1294 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
flower-RA | 21..1310 | 1..1290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RA | 16..1305 | 1..1290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6151-RA | 15..1308 | 1..1294 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RA | 16..1309 | 1..1294 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15810114..15810848 | 560..1294 | 100 | <- | Minus |
3L | 15813246..15813353 | 452..559 | 100 | <- | Minus |
3L | 15813419..15813626 | 244..451 | 100 | <- | Minus |
3L | 15815936..15816056 | 123..243 | 100 | <- | Minus |
3L | 15816274..15816395 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15810114..15810848 | 560..1294 | 100 | <- | Minus |
3L | 15813246..15813353 | 452..559 | 100 | <- | Minus |
3L | 15813419..15813626 | 244..451 | 100 | <- | Minus |
3L | 15815936..15816056 | 123..243 | 100 | <- | Minus |
3L | 15816274..15816395 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15810114..15810848 | 560..1294 | 100 | <- | Minus |
3L | 15813246..15813353 | 452..559 | 100 | <- | Minus |
3L | 15813419..15813626 | 244..451 | 100 | <- | Minus |
3L | 15815936..15816056 | 123..243 | 100 | <- | Minus |
3L | 15816274..15816395 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15803214..15803948 | 560..1294 | 100 | <- | Minus |
arm_3L | 15806346..15806453 | 452..559 | 100 | <- | Minus |
arm_3L | 15806519..15806726 | 244..451 | 100 | <- | Minus |
arm_3L | 15809036..15809156 | 123..243 | 100 | <- | Minus |
arm_3L | 15809374..15809495 | 1..122 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15803214..15803948 | 560..1294 | 100 | <- | Minus |
3L | 15806346..15806453 | 452..559 | 100 | <- | Minus |
3L | 15806519..15806726 | 244..451 | 100 | <- | Minus |
3L | 15809036..15809156 | 123..243 | 100 | <- | Minus |
3L | 15809374..15809495 | 1..122 | 100 | Minus |
Translation from 119 to 703
> LD28933.pep MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASA EDMRAAAQQTFGGNTPAQTNDRAGIVNNAQPFSFTGAVGTDSNV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10375-PA | 194 | GF10375-PA | 1..194 | 2..194 | 899 | 87.1 | Plus |
Dana\GF20158-PA | 194 | GF20158-PA | 3..159 | 1..157 | 718 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13520-PA | 194 | GG13520-PA | 1..194 | 1..194 | 969 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14474-PA | 206 | GH14474-PA | 12..206 | 2..194 | 826 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fwe-PA | 194 | CG6151-PA | 1..194 | 1..194 | 998 | 100 | Plus |
fwe-PB | 192 | CG6151-PB | 1..157 | 1..157 | 793 | 98.7 | Plus |
fwe-PC | 157 | CG6151-PC | 1..146 | 1..146 | 754 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13620-PA | 194 | GI13620-PA | 1..194 | 2..194 | 720 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24930-PA | 226 | GL24930-PA | 30..226 | 2..194 | 864 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19394-PA | 221 | GA19394-PA | 30..202 | 2..170 | 701 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24464-PA | 194 | GM24464-PA | 1..194 | 1..194 | 974 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12536-PA | 194 | GD12536-PA | 1..194 | 1..194 | 977 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13956-PA | 195 | GJ13956-PA | 1..195 | 2..194 | 779 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20652-PA | 200 | GK20652-PA | 1..200 | 2..194 | 777 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19812-PA | 194 | GE19812-PA | 1..194 | 1..194 | 980 | 96.9 | Plus |
Dyak\GE19810-PA | 91 | GE19810-PA | 28..91 | 131..194 | 249 | 79.7 | Plus |
Dyak\GE19810-PA | 91 | GE19810-PA | 1..41 | 1..41 | 225 | 100 | Plus |
Translation from 119 to 703
> LD28933.hyp MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASA EDMRAAAQQTFGGNTPAQTNDRAGIVNNAQPFSFTGAVGTDSNV*