Clone LD28933 Report

Search the DGRC for LD28933

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:289
Well:33
Vector:pOT2
Associated Gene/Transcriptfwe-RA
Protein status:LD28933.pep: gold
Preliminary Size:1561
Sequenced Size:1312

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6151 2001-01-01 Release 2 assignment
CG6151 2001-09-19 Blastp of sequenced clone
CG6151 2003-01-01 Sim4 clustering to Release 3
CG6151 2008-04-29 Release 5.5 accounting
CG6151 2008-08-15 Release 5.9 accounting
CG6151 2008-12-18 5.12 accounting

Clone Sequence Records

LD28933.complete Sequence

1312 bp (1312 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060385

> LD28933.complete
TTCGCGTGCAGCAGAACGCAAAGTACAACAGGATTTTTTTCGTTCCGTGT
GACGTGAAAAGTGCAAATAGTAATTGTTCGAATTAGTTTAAGCCTAGCTA
ACTAACTAAATAAATAGCCATGTCGTTTGCGGAAAAGATAACGGGTCTGC
TGGCACGGCCGAATCAACAAGATCCAATTGGACCGGAGCAGCCGTGGTAT
CTCAAATATGGAAGTCGATTGCTGGGCATTGTGGCCGCCTTCTTTGCCAT
TCTTTTCGGCCTGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATCCT
GCCTGGTGGCTGGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGCTC
TTGGAGGCTCCCTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATCGC
GGAAAAGGTGGAATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACATTG
CCATGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTATTC
GGCAGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCGTT
AGGCAAGAAAGCATCCGCCGAGGACATGCGGGCAGCTGCTCAGCAAACCT
TCGGAGGAAACACACCTGCCCAAACCAACGATCGAGCGGGGATTGTGAAC
AACGCCCAGCCCTTCTCCTTCACCGGTGCCGTGGGCACGGACAGCAATGT
GTGATTCAGAAGCTAGCTGATCGGGATTTCGAGGAATCGAAGAGCTGGGT
GTGCCGTGAGAAAACAAGACTCAAAACGCAACATTTGAAGGGCAAACCTA
ACCAAGAGAACATCGGCAGGCAATCATAAACATAATCATGTGCAATTTCT
GATTGTTCAATAACCAACGCAAATGGATAACAAAAGTTTTTAAATCCGAT
TAGCTCTGATCTCTTTCTAGAGCAATCCAAATTACTCGATCAGAAAGAAG
CCACCCAAAACAAGATCATTAAATTTTAAACCATTTTTGTATTAAATGTA
TGTAAATGTATATTGGTTTTAAAAGCGTTTTGCGTTTTCTGTATCCTATT
AATTAATTGTGTTGCCTGTGTCCCATCATTCCAAAACATTTGGTTTCAAC
TAAGTAGAAATTGCAAATAAATTATTGAACGACATCACTAGCGAGGTGAA
AAAAAAGATCATGTAAAATTTATGTTTAGTCATAGTTTAAATATACCTTA
AATATATTTAAATGCATAATACTAAAATGTTTAAATTAATGCAAATAACA
CTATAAATATTGTATGTAAACCATATTAAAATTGAATTAAAGATAAAAAA
AAAAAAAAAAAA

LD28933.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6151-RA 1343 CG6151-RA 49..1343 1..1295 6475 100 Plus
CG6151.c 1643 CG6151.c 49..626 1..578 2815 99.1 Plus
CG6151-RB 1151 CG6151-RB 49..626 1..578 2815 99.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15799941..15800672 1291..560 3660 100 Minus
chr3L 24539361 chr3L 15803243..15803450 451..244 1040 100 Minus
chr3L 24539361 chr3L 15805760..15805881 243..122 610 100 Minus
chr3L 24539361 chr3L 15806098..15806219 122..1 610 100 Minus
chr3L 24539361 chr3L 15803070..15803177 559..452 540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15810113..15810848 1295..560 3680 100 Minus
3L 28110227 3L 15813419..15813626 451..244 1040 100 Minus
3L 28110227 3L 15815936..15816057 243..122 610 100 Minus
3L 28110227 3L 15816274..15816395 122..1 610 100 Minus
3L 28110227 3L 15813246..15813353 559..452 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15803213..15803948 1295..560 3680 100 Minus
3L 28103327 3L 15806519..15806726 451..244 1040 100 Minus
3L 28103327 3L 15809374..15809495 122..1 610 100 Minus
3L 28103327 3L 15809036..15809157 243..122 610 100 Minus
3L 28103327 3L 15806346..15806453 559..452 540 100 Minus
Blast to na_te.dros performed 2019-03-16 10:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 555..717 1062..898 127 57.4 Minus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 531..672 1109..973 120 58.7 Minus
1360 3409 1360 1360 3409bp 2966..3055 1063..969 111 62.1 Minus

LD28933.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:57:10 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15799960..15800672 560..1272 100 <- Minus
chr3L 15803070..15803177 452..559 100 <- Minus
chr3L 15803243..15803450 244..451 100 <- Minus
chr3L 15805760..15805880 123..243 100 <- Minus
chr3L 15806098..15806219 1..122 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:49 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
CG6151-RA 1..585 120..704 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:17 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
flower-RA 1..585 120..704 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:18:15 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
fwe-RA 1..585 120..704 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:47 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
CG6151-RA 1..585 120..704 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:39 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
fwe-RA 1..585 120..704 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:31 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
CG6151-RA 15..1308 1..1294 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:17 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
flower-RA 21..1310 1..1290 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:18:15 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
fwe-RA 16..1305 1..1290 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:48 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
CG6151-RA 15..1308 1..1294 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:39 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
fwe-RA 16..1309 1..1294 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:10 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15810114..15810848 560..1294 100 <- Minus
3L 15813246..15813353 452..559 100 <- Minus
3L 15813419..15813626 244..451 100 <- Minus
3L 15815936..15816056 123..243 100 <- Minus
3L 15816274..15816395 1..122 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:10 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15810114..15810848 560..1294 100 <- Minus
3L 15813246..15813353 452..559 100 <- Minus
3L 15813419..15813626 244..451 100 <- Minus
3L 15815936..15816056 123..243 100 <- Minus
3L 15816274..15816395 1..122 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:10 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15810114..15810848 560..1294 100 <- Minus
3L 15813246..15813353 452..559 100 <- Minus
3L 15813419..15813626 244..451 100 <- Minus
3L 15815936..15816056 123..243 100 <- Minus
3L 15816274..15816395 1..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:18:15 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15803214..15803948 560..1294 100 <- Minus
arm_3L 15806346..15806453 452..559 100 <- Minus
arm_3L 15806519..15806726 244..451 100 <- Minus
arm_3L 15809036..15809156 123..243 100 <- Minus
arm_3L 15809374..15809495 1..122 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:29 Download gff for LD28933.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15803214..15803948 560..1294 100 <- Minus
3L 15806346..15806453 452..559 100 <- Minus
3L 15806519..15806726 244..451 100 <- Minus
3L 15809036..15809156 123..243 100 <- Minus
3L 15809374..15809495 1..122 100   Minus

LD28933.pep Sequence

Translation from 119 to 703

> LD28933.pep
MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN
VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK
PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASA
EDMRAAAQQTFGGNTPAQTNDRAGIVNNAQPFSFTGAVGTDSNV*

LD28933.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10375-PA 194 GF10375-PA 1..194 2..194 899 87.1 Plus
Dana\GF20158-PA 194 GF20158-PA 3..159 1..157 718 85.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13520-PA 194 GG13520-PA 1..194 1..194 969 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14474-PA 206 GH14474-PA 12..206 2..194 826 82.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
fwe-PA 194 CG6151-PA 1..194 1..194 998 100 Plus
fwe-PB 192 CG6151-PB 1..157 1..157 793 98.7 Plus
fwe-PC 157 CG6151-PC 1..146 1..146 754 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13620-PA 194 GI13620-PA 1..194 2..194 720 76.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24930-PA 226 GL24930-PA 30..226 2..194 864 85.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19394-PA 221 GA19394-PA 30..202 2..170 701 79.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24464-PA 194 GM24464-PA 1..194 1..194 974 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12536-PA 194 GD12536-PA 1..194 1..194 977 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13956-PA 195 GJ13956-PA 1..195 2..194 779 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20652-PA 200 GK20652-PA 1..200 2..194 777 82.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19812-PA 194 GE19812-PA 1..194 1..194 980 96.9 Plus
Dyak\GE19810-PA 91 GE19810-PA 28..91 131..194 249 79.7 Plus
Dyak\GE19810-PA 91 GE19810-PA 1..41 1..41 225 100 Plus

LD28933.hyp Sequence

Translation from 119 to 703

> LD28933.hyp
MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN
VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK
PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASA
EDMRAAAQQTFGGNTPAQTNDRAGIVNNAQPFSFTGAVGTDSNV*

LD28933.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
fwe-PA 194 CG6151-PA 1..194 1..194 998 100 Plus
fwe-PB 192 CG6151-PB 1..157 1..157 793 98.7 Plus
fwe-PC 157 CG6151-PC 1..146 1..146 754 100 Plus