Clone LD28935 Report

Search the DGRC for LD28935

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:289
Well:35
Vector:pOT2
Associated Gene/TranscriptSep5-RA
Protein status:LD28935.pep: gold
Preliminary Size:1941
Sequenced Size:1698

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2916 2001-01-01 Release 2 assignment
CG2916 2001-07-04 Blastp of sequenced clone
CG2916 2003-01-01 Sim4 clustering to Release 3
Sep5 2008-04-29 Release 5.5 accounting
Sep5 2008-08-15 Release 5.9 accounting
Sep5 2008-12-18 5.12 accounting

Clone Sequence Records

LD28935.complete Sequence

1698 bp (1698 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051754

> LD28935.complete
CCGCATTTAAAATCGTCAAGGCTGCAGGTAAAAGGAATCACAGGTAGAAA
ACTCTTAGATACAGTTTAATTCTCGGTACGCCACCAGATGCAGGAAAATC
CAAATGGCTTATTAAGAAAAACGACTAGGGTTTACACAGGCTGCACATAC
GAGAATTCCGGGTATAAAGAGTGGCGCCTGCGCTGGGTCGTGACATTATT
CTAACGAAAGCACTGGCGAAATGGTTCATTTAGTGACTGAAAAGAAGACG
CAGGAGGTGGCAACCAAAGTCCCCAGGCTCCTTCAACTCGGCGGCCACGT
GGGGTTCGACACCCTACCGGACCAGCTGGTCAACAAGAGCGTCCAGAATG
GCTTTAGCTTCAATATCCTATGCATCGGCGAGACCGCTCTCGGGAAATCC
ACTCTCATGGACACACTGTTCAATACCAGTTTTGGATCTACACCGAGCCC
GCACAACCTGCCCAATGTGAAGCTGAAGGCAAATACATACGAGCTGCAGG
AGAGCAACGTCCGCCTGAAGCTGACCGTCTGTGACACGATCGGATACGGA
GATCAGGTTAATAAAGCGGACAGCTACAAGGCTTTGGTGGAGTACGTGGA
CAGCCAGTTTGAAGCGTATTTGCAGGAAGAGCTCAAGATCCAGCGAGCGA
TGGCCAGTGCTCATGATGGACGCGTTCACGCCTGCCTGTACTTCATCTGT
CCCACGGGCCATGGTCTGAAAGCTATGGATTTGGTGTGCATGAAGCAGCT
TGACACTAGGGTGAACATCATTCCCGTGATCGCGAAGGCCGACACCATCT
CCAAGTCGGAGCTGTCGGGGTTTAAGGAACGCATAATGGACGAACTACGG
CGGAACAATGTGAGCATATACCAGTTTCCCATGGACGACGAAACCGTGTC
CGAAACAAATGCTGCGATGAACGGCCATCTACCCTTTGCCGTTGTTGGCA
GTACGGAGTTTGTAAAGGTGGCCGGAAAGCAGGTTCGTGCCCGCCAATAT
CCATGGGGAGCGGTGCACATAGAAAACGAGGCGCACTGCGACTTTGTGAA
GCTGCGCGAGATGCTCATTCGCACTAACATGGAGGATCTGCGCGAACAGA
CTCACACACGCCACTATGAGCTCTTCCGCCAGCGGCGCCTACAACAAATG
GGCTTTGTGGACGTGGACAGCAACAACCAGCCGGTCTCCTTCCAACAGAC
CTTCGAGTCGAAGCGATCCGACCATCTGGCTTGCCTACAGGCCAAGGAGG
AGGAAGTGCGCCAAATGTTCGTTCAGCGGGTCAAGCAGAAGGAGAACGAG
CTGAAGGACAACGAGAAGGAATTGCATACTAAGTTCGACCGGCTAAAACG
GGAGCATTTGGAGGAAAAGGCCCAACTGGAAGAGGCCCGTCGGCAGCTGG
AAGAGGATTGCCAGGAGCTACAGCGTCGTAGGCTCCAGATGGCCAATGGT
TCGCACACTCTCACCTTGGGCAGGGGCAAGAAAAAGTAGTTAAGTTTAGA
ATGTTTTCGATTTTACTAAAACTGCCTATGCGATTAAATTTCTACAAACC
TTACCTATGACTCCACTCCTATACCAAGAAGTATACTAATTTTGATATTT
TATTTCTTTTTATTTTAACGATCTATGATTTCCAATTAAACAGTTTATAA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAA

LD28935.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Sep5-RA 1741 Sep5-RA 5..1659 1..1655 8275 100 Plus
Sep5-RB 1891 Sep5-RB 239..1809 85..1655 7855 100 Plus
Sep2-RA 1768 Sep2-RA 834..1286 932..1384 825 78.8 Plus
Sep2-RA 1768 Sep2-RA 194..555 292..653 490 75.6 Plus
Sep2-RA 1768 Sep2-RA 584..707 682..805 230 79 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3847607..3849261 1655..1 8275 100 Minus
chr3R 27901430 chr3R 16410365..16411372 1384..377 1140 74.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7960215..7961869 1655..1 8275 100 Minus
3R 32079331 3R 20586451..20587458 1384..377 1140 74.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7961414..7963068 1655..1 8275 100 Minus
3R 31820162 3R 20327282..20327734 1384..932 825 78.8 Minus
3R 31820162 3R 20328013..20328289 653..377 335 74.7 Minus
3R 31820162 3R 20327861..20327984 805..682 230 79 Minus
3R 31820162 3R 20328981..20329040 351..292 180 86.6 Minus
Blast to na_te.dros performed on 2019-03-16 20:27:00 has no hits.

LD28935.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:27:46 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3847616..3849261 1..1646 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:50 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RB 1..1269 221..1489 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:47 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RB 1..1269 221..1489 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:06 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 1..1269 221..1489 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:27 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RB 1..1269 221..1489 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:53 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 1..1269 221..1489 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:18 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 5..1650 1..1646 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:47 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 5..1650 1..1646 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:06 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 53..1698 1..1646 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:28 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 5..1650 1..1646 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:53 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 53..1698 1..1646 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:46 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7960224..7961869 1..1646 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:46 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7960224..7961869 1..1646 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:46 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7960224..7961869 1..1646 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:06 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3847729..3849374 1..1646 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:57 Download gff for LD28935.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7961423..7963068 1..1646 100   Minus

LD28935.pep Sequence

Translation from 220 to 1488

> LD28935.pep
MVHLVTEKKTQEVATKVPRLLQLGGHVGFDTLPDQLVNKSVQNGFSFNIL
CIGETALGKSTLMDTLFNTSFGSTPSPHNLPNVKLKANTYELQESNVRLK
LTVCDTIGYGDQVNKADSYKALVEYVDSQFEAYLQEELKIQRAMASAHDG
RVHACLYFICPTGHGLKAMDLVCMKQLDTRVNIIPVIAKADTISKSELSG
FKERIMDELRRNNVSIYQFPMDDETVSETNAAMNGHLPFAVVGSTEFVKV
AGKQVRARQYPWGAVHIENEAHCDFVKLREMLIRTNMEDLREQTHTRHYE
LFRQRRLQQMGFVDVDSNNQPVSFQQTFESKRSDHLACLQAKEEEVRQMF
VQRVKQKENELKDNEKELHTKFDRLKREHLEEKAQLEEARRQLEEDCQEL
QRRRLQMANGSHTLTLGRGKKK*

LD28935.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11226-PA 419 GF11226-PA 1..415 1..415 1902 85.8 Plus
Dana\GF18330-PA 419 GF18330-PA 16..419 19..422 1716 74.5 Plus
Dana\GF12347-PA 545 GF12347-PA 123..514 21..413 791 39.1 Plus
Dana\GF22296-PA 375 GF22296-PA 2..347 15..349 698 40.6 Plus
Dana\GF20920-PA 364 GF20920-PA 10..349 21..349 675 41.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10692-PA 422 GG10692-PA 1..422 1..422 2224 97.2 Plus
Dere\GG15324-PA 419 GG15324-PA 16..419 19..422 1718 74.5 Plus
Dere\GG23345-PA 541 GG23345-PA 119..484 21..387 767 40.2 Plus
Dere\GG18234-PA 430 GG18234-PA 58..402 16..349 687 39.8 Plus
Dere\GG19725-PA 361 GG19725-PA 10..304 21..309 675 44.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16156-PA 419 GH16156-PA 16..419 19..422 1721 75 Plus
Dgri\GH21082-PA 541 GH21082-PA 119..510 21..413 789 38.9 Plus
Dgri\GH24812-PA 362 GH24812-PA 10..347 21..349 698 42.6 Plus
Dgri\GH24231-PA 440 GH24231-PA 68..412 16..349 689 40.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Sep5-PB 422 CG2916-PB 1..422 1..422 2182 100 Plus
Sep5-PA 422 CG2916-PA 1..422 1..422 2182 100 Plus
Sep2-PA 419 CG4173-PA 16..419 19..422 1651 74.5 Plus
Sep2-PB 360 CG4173-PB 1..360 63..422 1463 73.9 Plus
pnut-PA 539 CG8705-PA 117..516 21..422 776 39.2 Plus
pnut-PB 539 CG8705-PB 117..516 21..422 776 39.2 Plus
Sep4-PG 375 CG9699-PG 2..359 15..362 672 39.4 Plus
Sep4-PC 427 CG9699-PC 55..411 16..362 671 39.5 Plus
Sep4-PE 427 CG9699-PE 55..411 16..362 671 39.5 Plus
Sep4-PD 427 CG9699-PD 55..411 16..362 671 39.5 Plus
Sep4-PB 427 CG9699-PB 55..411 16..362 671 39.5 Plus
Sep4-PF 427 CG9699-PF 55..411 16..362 671 39.5 Plus
Sep4-PA 427 CG9699-PA 55..411 16..362 671 39.5 Plus
Sep1-PA 361 CG1403-PA 10..346 21..349 663 42.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22174-PA 419 GI22174-PA 16..419 19..422 1724 75.2 Plus
Dmoj\GI18682-PA 541 GI18682-PA 119..509 21..412 799 39.5 Plus
Dmoj\GI21539-PA 364 GI21539-PA 10..349 21..349 689 42.5 Plus
Dmoj\GI10938-PA 294 GI10938-PA 2..266 91..349 559 41.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10608-PA 421 GL10608-PA 1..421 1..422 1909 84.7 Plus
Dper\GL13925-PA 419 GL13925-PA 16..419 19..422 1718 74.5 Plus
Dper\GL11211-PA 534 GL11211-PA 88..502 1..412 799 39.5 Plus
Dper\GL16012-PA 363 GL16012-PA 10..348 21..349 684 42.2 Plus
Dper\GL19764-PA 369 GL19764-PA 41..341 44..349 609 39 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15516-PA 421 GA15516-PA 1..421 1..422 1914 84.9 Plus
Dpse\GA18006-PA 419 GA18006-PA 16..419 19..422 1718 74.5 Plus
Dpse\GA21269-PA 534 GA21269-PA 88..502 1..412 799 39.5 Plus
Dpse\GA21972-PA 432 GA21972-PA 60..404 16..349 685 39.8 Plus
Dpse\GA12712-PA 363 GA12712-PA 10..348 21..349 684 42.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20740-PA 422 GM20740-PA 1..422 1..422 2245 98.3 Plus
Dsec\GM23178-PA 419 GM23178-PA 16..419 19..422 1718 74.5 Plus
Dsec\GM21017-PA 539 GM21017-PA 117..482 21..387 768 40.2 Plus
Dsec\GM23080-PA 361 GM23080-PA 10..346 21..349 683 42.3 Plus
Dsec\GM13376-PA 217 GM13376-PA 1..189 169..349 365 40.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10205-PA 422 GD10205-PA 1..422 1..422 2253 98.8 Plus
Dsim\GD20051-PA 419 GD20051-PA 16..419 19..422 1721 74.8 Plus
Dsim\GD10550-PA 528 GD10550-PA 106..471 21..387 768 40.2 Plus
Dsim\GD15296-PA 196 GD15296-PA 49..196 275..422 752 98.6 Plus
Dsim\GD15733-PA 375 GD15733-PA 2..347 15..349 693 40 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24294-PA 419 GJ24294-PA 16..419 19..422 1722 75 Plus
Dvir\GJ21698-PA 538 GJ21698-PA 116..506 21..412 791 39.2 Plus
Dvir\GJ16012-PA 364 GJ16012-PA 10..349 21..349 683 41.9 Plus
Dvir\GJ15264-PA 440 GJ15264-PA 75..412 16..349 641 38.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15728-PA 422 GK15728-PA 1..422 1..422 1828 79.5 Plus
Dwil\GK22714-PA 419 GK22714-PA 16..419 19..422 1714 74.3 Plus
Dwil\GK15820-PA 546 GK15820-PA 124..514 21..412 793 39.2 Plus
Dwil\GK10092-PA 431 GK10092-PA 59..403 16..349 694 40.4 Plus
Dwil\GK25618-PA 364 GK25618-PA 14..349 25..349 679 42.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23454-PA 422 GE23454-PA 1..422 1..422 2182 95 Plus
Dyak\Sep2-PA 419 GE25056-PA 16..419 19..422 1717 74.5 Plus
Dyak\GE19185-PA 541 GE19185-PA 119..484 21..387 767 40.2 Plus
Dyak\GE15652-PA 430 GE15652-PA 58..402 16..349 690 40.1 Plus
Dyak\GE17923-PA 361 GE17923-PA 10..304 21..309 675 44.3 Plus

LD28935.hyp Sequence

Translation from 220 to 1488

> LD28935.hyp
MVHLVTEKKTQEVATKVPRLLQLGGHVGFDTLPDQLVNKSVQNGFSFNIL
CIGETALGKSTLMDTLFNTSFGSTPSPHNLPNVKLKANTYELQESNVRLK
LTVCDTIGYGDQVNKADSYKALVEYVDSQFEAYLQEELKIQRAMASAHDG
RVHACLYFICPTGHGLKAMDLVCMKQLDTRVNIIPVIAKADTISKSELSG
FKERIMDELRRNNVSIYQFPMDDETVSETNAAMNGHLPFAVVGSTEFVKV
AGKQVRARQYPWGAVHIENEAHCDFVKLREMLIRTNMEDLREQTHTRHYE
LFRQRRLQQMGFVDVDSNNQPVSFQQTFESKRSDHLACLQAKEEEVRQMF
VQRVKQKENELKDNEKELHTKFDRLKREHLEEKAQLEEARRQLEEDCQEL
QRRRLQMANGSHTLTLGRGKKK*

LD28935.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Sep5-PB 422 CG2916-PB 1..422 1..422 2182 100 Plus
Sep5-PA 422 CG2916-PA 1..422 1..422 2182 100 Plus
Sep2-PA 419 CG4173-PA 16..419 19..422 1651 74.5 Plus
Sep2-PB 360 CG4173-PB 1..360 63..422 1463 73.9 Plus
pnut-PA 539 CG8705-PA 117..516 21..422 776 39.2 Plus