BDGP Sequence Production Resources |
Search the DGRC for LD28935
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 289 |
Well: | 35 |
Vector: | pOT2 |
Associated Gene/Transcript | Sep5-RA |
Protein status: | LD28935.pep: gold |
Preliminary Size: | 1941 |
Sequenced Size: | 1698 |
Gene | Date | Evidence |
---|---|---|
CG2916 | 2001-01-01 | Release 2 assignment |
CG2916 | 2001-07-04 | Blastp of sequenced clone |
CG2916 | 2003-01-01 | Sim4 clustering to Release 3 |
Sep5 | 2008-04-29 | Release 5.5 accounting |
Sep5 | 2008-08-15 | Release 5.9 accounting |
Sep5 | 2008-12-18 | 5.12 accounting |
1698 bp (1698 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051754
> LD28935.complete CCGCATTTAAAATCGTCAAGGCTGCAGGTAAAAGGAATCACAGGTAGAAA ACTCTTAGATACAGTTTAATTCTCGGTACGCCACCAGATGCAGGAAAATC CAAATGGCTTATTAAGAAAAACGACTAGGGTTTACACAGGCTGCACATAC GAGAATTCCGGGTATAAAGAGTGGCGCCTGCGCTGGGTCGTGACATTATT CTAACGAAAGCACTGGCGAAATGGTTCATTTAGTGACTGAAAAGAAGACG CAGGAGGTGGCAACCAAAGTCCCCAGGCTCCTTCAACTCGGCGGCCACGT GGGGTTCGACACCCTACCGGACCAGCTGGTCAACAAGAGCGTCCAGAATG GCTTTAGCTTCAATATCCTATGCATCGGCGAGACCGCTCTCGGGAAATCC ACTCTCATGGACACACTGTTCAATACCAGTTTTGGATCTACACCGAGCCC GCACAACCTGCCCAATGTGAAGCTGAAGGCAAATACATACGAGCTGCAGG AGAGCAACGTCCGCCTGAAGCTGACCGTCTGTGACACGATCGGATACGGA GATCAGGTTAATAAAGCGGACAGCTACAAGGCTTTGGTGGAGTACGTGGA CAGCCAGTTTGAAGCGTATTTGCAGGAAGAGCTCAAGATCCAGCGAGCGA TGGCCAGTGCTCATGATGGACGCGTTCACGCCTGCCTGTACTTCATCTGT CCCACGGGCCATGGTCTGAAAGCTATGGATTTGGTGTGCATGAAGCAGCT TGACACTAGGGTGAACATCATTCCCGTGATCGCGAAGGCCGACACCATCT CCAAGTCGGAGCTGTCGGGGTTTAAGGAACGCATAATGGACGAACTACGG CGGAACAATGTGAGCATATACCAGTTTCCCATGGACGACGAAACCGTGTC CGAAACAAATGCTGCGATGAACGGCCATCTACCCTTTGCCGTTGTTGGCA GTACGGAGTTTGTAAAGGTGGCCGGAAAGCAGGTTCGTGCCCGCCAATAT CCATGGGGAGCGGTGCACATAGAAAACGAGGCGCACTGCGACTTTGTGAA GCTGCGCGAGATGCTCATTCGCACTAACATGGAGGATCTGCGCGAACAGA CTCACACACGCCACTATGAGCTCTTCCGCCAGCGGCGCCTACAACAAATG GGCTTTGTGGACGTGGACAGCAACAACCAGCCGGTCTCCTTCCAACAGAC CTTCGAGTCGAAGCGATCCGACCATCTGGCTTGCCTACAGGCCAAGGAGG AGGAAGTGCGCCAAATGTTCGTTCAGCGGGTCAAGCAGAAGGAGAACGAG CTGAAGGACAACGAGAAGGAATTGCATACTAAGTTCGACCGGCTAAAACG GGAGCATTTGGAGGAAAAGGCCCAACTGGAAGAGGCCCGTCGGCAGCTGG AAGAGGATTGCCAGGAGCTACAGCGTCGTAGGCTCCAGATGGCCAATGGT TCGCACACTCTCACCTTGGGCAGGGGCAAGAAAAAGTAGTTAAGTTTAGA ATGTTTTCGATTTTACTAAAACTGCCTATGCGATTAAATTTCTACAAACC TTACCTATGACTCCACTCCTATACCAAGAAGTATACTAATTTTGATATTT TATTTCTTTTTATTTTAACGATCTATGATTTCCAATTAAACAGTTTATAA ATAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sep5-RA | 1741 | Sep5-RA | 5..1659 | 1..1655 | 8275 | 100 | Plus |
Sep5-RB | 1891 | Sep5-RB | 239..1809 | 85..1655 | 7855 | 100 | Plus |
Sep2-RA | 1768 | Sep2-RA | 834..1286 | 932..1384 | 825 | 78.8 | Plus |
Sep2-RA | 1768 | Sep2-RA | 194..555 | 292..653 | 490 | 75.6 | Plus |
Sep2-RA | 1768 | Sep2-RA | 584..707 | 682..805 | 230 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7961414..7963068 | 1655..1 | 8275 | 100 | Minus |
3R | 31820162 | 3R | 20327282..20327734 | 1384..932 | 825 | 78.8 | Minus |
3R | 31820162 | 3R | 20328013..20328289 | 653..377 | 335 | 74.7 | Minus |
3R | 31820162 | 3R | 20327861..20327984 | 805..682 | 230 | 79 | Minus |
3R | 31820162 | 3R | 20328981..20329040 | 351..292 | 180 | 86.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3847616..3849261 | 1..1646 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep5-RB | 1..1269 | 221..1489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep5-RB | 1..1269 | 221..1489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep5-RA | 1..1269 | 221..1489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep5-RB | 1..1269 | 221..1489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep5-RA | 1..1269 | 221..1489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep5-RA | 5..1650 | 1..1646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep5-RA | 5..1650 | 1..1646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep5-RA | 53..1698 | 1..1646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep5-RA | 5..1650 | 1..1646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep5-RA | 53..1698 | 1..1646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7960224..7961869 | 1..1646 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7960224..7961869 | 1..1646 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7960224..7961869 | 1..1646 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3847729..3849374 | 1..1646 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7961423..7963068 | 1..1646 | 100 | Minus |
Translation from 220 to 1488
> LD28935.pep MVHLVTEKKTQEVATKVPRLLQLGGHVGFDTLPDQLVNKSVQNGFSFNIL CIGETALGKSTLMDTLFNTSFGSTPSPHNLPNVKLKANTYELQESNVRLK LTVCDTIGYGDQVNKADSYKALVEYVDSQFEAYLQEELKIQRAMASAHDG RVHACLYFICPTGHGLKAMDLVCMKQLDTRVNIIPVIAKADTISKSELSG FKERIMDELRRNNVSIYQFPMDDETVSETNAAMNGHLPFAVVGSTEFVKV AGKQVRARQYPWGAVHIENEAHCDFVKLREMLIRTNMEDLREQTHTRHYE LFRQRRLQQMGFVDVDSNNQPVSFQQTFESKRSDHLACLQAKEEEVRQMF VQRVKQKENELKDNEKELHTKFDRLKREHLEEKAQLEEARRQLEEDCQEL QRRRLQMANGSHTLTLGRGKKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11226-PA | 419 | GF11226-PA | 1..415 | 1..415 | 1902 | 85.8 | Plus |
Dana\GF18330-PA | 419 | GF18330-PA | 16..419 | 19..422 | 1716 | 74.5 | Plus |
Dana\GF12347-PA | 545 | GF12347-PA | 123..514 | 21..413 | 791 | 39.1 | Plus |
Dana\GF22296-PA | 375 | GF22296-PA | 2..347 | 15..349 | 698 | 40.6 | Plus |
Dana\GF20920-PA | 364 | GF20920-PA | 10..349 | 21..349 | 675 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10692-PA | 422 | GG10692-PA | 1..422 | 1..422 | 2224 | 97.2 | Plus |
Dere\GG15324-PA | 419 | GG15324-PA | 16..419 | 19..422 | 1718 | 74.5 | Plus |
Dere\GG23345-PA | 541 | GG23345-PA | 119..484 | 21..387 | 767 | 40.2 | Plus |
Dere\GG18234-PA | 430 | GG18234-PA | 58..402 | 16..349 | 687 | 39.8 | Plus |
Dere\GG19725-PA | 361 | GG19725-PA | 10..304 | 21..309 | 675 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16156-PA | 419 | GH16156-PA | 16..419 | 19..422 | 1721 | 75 | Plus |
Dgri\GH21082-PA | 541 | GH21082-PA | 119..510 | 21..413 | 789 | 38.9 | Plus |
Dgri\GH24812-PA | 362 | GH24812-PA | 10..347 | 21..349 | 698 | 42.6 | Plus |
Dgri\GH24231-PA | 440 | GH24231-PA | 68..412 | 16..349 | 689 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sep5-PB | 422 | CG2916-PB | 1..422 | 1..422 | 2182 | 100 | Plus |
Sep5-PA | 422 | CG2916-PA | 1..422 | 1..422 | 2182 | 100 | Plus |
Sep2-PA | 419 | CG4173-PA | 16..419 | 19..422 | 1651 | 74.5 | Plus |
Sep2-PB | 360 | CG4173-PB | 1..360 | 63..422 | 1463 | 73.9 | Plus |
pnut-PA | 539 | CG8705-PA | 117..516 | 21..422 | 776 | 39.2 | Plus |
pnut-PB | 539 | CG8705-PB | 117..516 | 21..422 | 776 | 39.2 | Plus |
Sep4-PG | 375 | CG9699-PG | 2..359 | 15..362 | 672 | 39.4 | Plus |
Sep4-PC | 427 | CG9699-PC | 55..411 | 16..362 | 671 | 39.5 | Plus |
Sep4-PE | 427 | CG9699-PE | 55..411 | 16..362 | 671 | 39.5 | Plus |
Sep4-PD | 427 | CG9699-PD | 55..411 | 16..362 | 671 | 39.5 | Plus |
Sep4-PB | 427 | CG9699-PB | 55..411 | 16..362 | 671 | 39.5 | Plus |
Sep4-PF | 427 | CG9699-PF | 55..411 | 16..362 | 671 | 39.5 | Plus |
Sep4-PA | 427 | CG9699-PA | 55..411 | 16..362 | 671 | 39.5 | Plus |
Sep1-PA | 361 | CG1403-PA | 10..346 | 21..349 | 663 | 42.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22174-PA | 419 | GI22174-PA | 16..419 | 19..422 | 1724 | 75.2 | Plus |
Dmoj\GI18682-PA | 541 | GI18682-PA | 119..509 | 21..412 | 799 | 39.5 | Plus |
Dmoj\GI21539-PA | 364 | GI21539-PA | 10..349 | 21..349 | 689 | 42.5 | Plus |
Dmoj\GI10938-PA | 294 | GI10938-PA | 2..266 | 91..349 | 559 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10608-PA | 421 | GL10608-PA | 1..421 | 1..422 | 1909 | 84.7 | Plus |
Dper\GL13925-PA | 419 | GL13925-PA | 16..419 | 19..422 | 1718 | 74.5 | Plus |
Dper\GL11211-PA | 534 | GL11211-PA | 88..502 | 1..412 | 799 | 39.5 | Plus |
Dper\GL16012-PA | 363 | GL16012-PA | 10..348 | 21..349 | 684 | 42.2 | Plus |
Dper\GL19764-PA | 369 | GL19764-PA | 41..341 | 44..349 | 609 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15516-PA | 421 | GA15516-PA | 1..421 | 1..422 | 1914 | 84.9 | Plus |
Dpse\GA18006-PA | 419 | GA18006-PA | 16..419 | 19..422 | 1718 | 74.5 | Plus |
Dpse\GA21269-PA | 534 | GA21269-PA | 88..502 | 1..412 | 799 | 39.5 | Plus |
Dpse\GA21972-PA | 432 | GA21972-PA | 60..404 | 16..349 | 685 | 39.8 | Plus |
Dpse\GA12712-PA | 363 | GA12712-PA | 10..348 | 21..349 | 684 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20740-PA | 422 | GM20740-PA | 1..422 | 1..422 | 2245 | 98.3 | Plus |
Dsec\GM23178-PA | 419 | GM23178-PA | 16..419 | 19..422 | 1718 | 74.5 | Plus |
Dsec\GM21017-PA | 539 | GM21017-PA | 117..482 | 21..387 | 768 | 40.2 | Plus |
Dsec\GM23080-PA | 361 | GM23080-PA | 10..346 | 21..349 | 683 | 42.3 | Plus |
Dsec\GM13376-PA | 217 | GM13376-PA | 1..189 | 169..349 | 365 | 40.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10205-PA | 422 | GD10205-PA | 1..422 | 1..422 | 2253 | 98.8 | Plus |
Dsim\GD20051-PA | 419 | GD20051-PA | 16..419 | 19..422 | 1721 | 74.8 | Plus |
Dsim\GD10550-PA | 528 | GD10550-PA | 106..471 | 21..387 | 768 | 40.2 | Plus |
Dsim\GD15296-PA | 196 | GD15296-PA | 49..196 | 275..422 | 752 | 98.6 | Plus |
Dsim\GD15733-PA | 375 | GD15733-PA | 2..347 | 15..349 | 693 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24294-PA | 419 | GJ24294-PA | 16..419 | 19..422 | 1722 | 75 | Plus |
Dvir\GJ21698-PA | 538 | GJ21698-PA | 116..506 | 21..412 | 791 | 39.2 | Plus |
Dvir\GJ16012-PA | 364 | GJ16012-PA | 10..349 | 21..349 | 683 | 41.9 | Plus |
Dvir\GJ15264-PA | 440 | GJ15264-PA | 75..412 | 16..349 | 641 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15728-PA | 422 | GK15728-PA | 1..422 | 1..422 | 1828 | 79.5 | Plus |
Dwil\GK22714-PA | 419 | GK22714-PA | 16..419 | 19..422 | 1714 | 74.3 | Plus |
Dwil\GK15820-PA | 546 | GK15820-PA | 124..514 | 21..412 | 793 | 39.2 | Plus |
Dwil\GK10092-PA | 431 | GK10092-PA | 59..403 | 16..349 | 694 | 40.4 | Plus |
Dwil\GK25618-PA | 364 | GK25618-PA | 14..349 | 25..349 | 679 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23454-PA | 422 | GE23454-PA | 1..422 | 1..422 | 2182 | 95 | Plus |
Dyak\Sep2-PA | 419 | GE25056-PA | 16..419 | 19..422 | 1717 | 74.5 | Plus |
Dyak\GE19185-PA | 541 | GE19185-PA | 119..484 | 21..387 | 767 | 40.2 | Plus |
Dyak\GE15652-PA | 430 | GE15652-PA | 58..402 | 16..349 | 690 | 40.1 | Plus |
Dyak\GE17923-PA | 361 | GE17923-PA | 10..304 | 21..309 | 675 | 44.3 | Plus |
Translation from 220 to 1488
> LD28935.hyp MVHLVTEKKTQEVATKVPRLLQLGGHVGFDTLPDQLVNKSVQNGFSFNIL CIGETALGKSTLMDTLFNTSFGSTPSPHNLPNVKLKANTYELQESNVRLK LTVCDTIGYGDQVNKADSYKALVEYVDSQFEAYLQEELKIQRAMASAHDG RVHACLYFICPTGHGLKAMDLVCMKQLDTRVNIIPVIAKADTISKSELSG FKERIMDELRRNNVSIYQFPMDDETVSETNAAMNGHLPFAVVGSTEFVKV AGKQVRARQYPWGAVHIENEAHCDFVKLREMLIRTNMEDLREQTHTRHYE LFRQRRLQQMGFVDVDSNNQPVSFQQTFESKRSDHLACLQAKEEEVRQMF VQRVKQKENELKDNEKELHTKFDRLKREHLEEKAQLEEARRQLEEDCQEL QRRRLQMANGSHTLTLGRGKKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sep5-PB | 422 | CG2916-PB | 1..422 | 1..422 | 2182 | 100 | Plus |
Sep5-PA | 422 | CG2916-PA | 1..422 | 1..422 | 2182 | 100 | Plus |
Sep2-PA | 419 | CG4173-PA | 16..419 | 19..422 | 1651 | 74.5 | Plus |
Sep2-PB | 360 | CG4173-PB | 1..360 | 63..422 | 1463 | 73.9 | Plus |
pnut-PA | 539 | CG8705-PA | 117..516 | 21..422 | 776 | 39.2 | Plus |