Clone LD28980 Report

Search the DGRC for LD28980

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:289
Well:80
Vector:pOT2
Associated Gene/TranscriptCG1542-RA
Protein status:LD28980.pep: gold
Preliminary Size:1447
Sequenced Size:1235

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1542 2001-07-04 Blastp of sequenced clone
CG1542 2003-01-01 Sim4 clustering to Release 3
CG1542 2008-04-29 Release 5.5 accounting
CG1542 2008-08-15 Release 5.9 accounting
CG1542 2008-12-18 5.12 accounting

Clone Sequence Records

LD28980.complete Sequence

1235 bp (1235 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051756

> LD28980.complete
TAGACTTAGGCCAGCAACAATCGATAATTCTTATCCCCGCACGTGTTGAA
ATTGTTTTCTTTTATTTGGATCAGATTTAATTTAGTTAATTCAGACATGT
CGGACTTTGAAATGGAGGACAGTGCCTCGGGCTACGACTCAGGGGATAAC
TCAGATGCCGAGCTGCAAGCGGCATTTGAGCGAGGCGACTTGAAACCAGG
CCTAAATGTGGAATTCAATGGCCAGAGAGACAAAGTGAACGATGTGACCA
AACTGCTGGCCAAGACAGAGGCTATCAAGATGCAACTGCCTTGGCTGGAA
CGCCTGGACATGATCAACACACTAGCTCCACTGGCGCCGGAACTCGCTGT
ACAGCTGGAGAAGCACGAGCAGAAGCGGGCCAATCTCTTCAAGGGCAACG
CCAAGCTGCCCTACATTCGGCCCGAGGAGGATCCCGTCCTGAATGACTTC
AAGAGGGAGATGCTCTTCCACCGACAGGCGCAAAGTGCTGTTCTGGAGGC
CATTCCCCGCCTTCACGAGCTGGGCATAAAGACTCGTCGACCCGATGACT
ACTTCGCTGAAATGGCCAAGTCCGACGAGCACATGCAGAAGGTGCGCGCC
AACCTGATGGCCAAACAGCAAGGACAGGCGAAATCCGAGCGCATCAAGCA
GATCCGCGAGCAGCGCAAGATGGGCAAGATGCTGGCCAAACAGACCAAGG
TCCAACGCGAAGCCGAGAAGAAGGACATGCTGGACAAACTGAAGAAGTTC
CGCAAGGGCAAGCTGAAAAACCTGGACTTCCTGGAGGACGCCAAGGCGCT
TGAGTCCAAGCAGAAGCAGTCAGCCGAGAATCGCAAGAAGCGCAACAAGA
AGTTCGGCTTCGGCGGCAAGAAGAAGGGCCTCAAGAGGAACACAAAGTCC
TCCTCCGCGGGATTGGATGGCGACAAGTCCTCCAGGCGCCAGCGGGGCGT
AAAGGCAGGTGCTTCGGTCAACAAGCGGCTTGGCAAATCGCGACGCATTA
AGGCCAAGGGCAGAAAGTAATCCCCGGGACTGCCGACTATATTTAGGTGA
CCAAACTCTAGTTTTATAAAGCCCCCAATCCTGTATAGATTTTTTAGACC
CATAAATACATAACATTTTGTGTGCACACAGCCTTACTTTCGAAATGTGG
AATACTCCGTATAGAATTTTAGAATTCCATGAGCAATTTTCATAAATTAC
ATTTTTCTAACATCGTTAAAAAAAAAAAAAAAAAA

LD28980.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-RA 1302 CG1542-RA 82..1298 1..1217 6085 100 Plus
CG1542.a 1317 CG1542.a 342..1313 246..1217 4860 100 Plus
CG1542.a 1317 CG1542.a 39..284 1..246 1230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27036202..27037173 246..1217 4845 99.9 Plus
chr3R 27901430 chr3R 27035837..27035998 1..162 810 100 Plus
chr3R 27901430 chr3R 27036059..27036144 161..246 430 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31213813..31214784 246..1217 4860 100 Plus
3R 32079331 3R 31213448..31213609 1..162 810 100 Plus
3R 32079331 3R 31213670..31213755 161..246 430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30954644..30955615 246..1217 4860 100 Plus
3R 31820162 3R 30954279..30954440 1..162 810 100 Plus
3R 31820162 3R 30954501..30954586 161..246 430 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:14:11 has no hits.

LD28980.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:15:16 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27035837..27035998 1..162 100 -> Plus
chr3R 27036061..27036144 163..246 100 -> Plus
chr3R 27036203..27037173 247..1217 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:52 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 1..924 97..1020 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:38 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 1..924 97..1020 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:08:17 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 1..924 97..1020 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:15 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 1..924 97..1020 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:00:14 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 1..924 97..1020 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:05 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 39..1255 1..1217 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:38 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 39..1255 1..1217 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:17 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 1..1207 11..1217 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:16 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 39..1255 1..1217 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:00:14 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 1..1207 11..1217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:16 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31213448..31213609 1..162 100 -> Plus
3R 31213672..31213755 163..246 100 -> Plus
3R 31213814..31214784 247..1217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:16 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31213448..31213609 1..162 100 -> Plus
3R 31213672..31213755 163..246 100 -> Plus
3R 31213814..31214784 247..1217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:16 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31213448..31213609 1..162 100 -> Plus
3R 31213672..31213755 163..246 100 -> Plus
3R 31213814..31214784 247..1217 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:17 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27039170..27039331 1..162 100 -> Plus
arm_3R 27039394..27039477 163..246 100 -> Plus
arm_3R 27039536..27040506 247..1217 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:47 Download gff for LD28980.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30954279..30954440 1..162 100 -> Plus
3R 30954503..30954586 163..246 100 -> Plus
3R 30954645..30955615 247..1217 100   Plus

LD28980.pep Sequence

Translation from 96 to 1019

> LD28980.pep
MSDFEMEDSASGYDSGDNSDAELQAAFERGDLKPGLNVEFNGQRDKVNDV
TKLLAKTEAIKMQLPWLERLDMINTLAPLAPELAVQLEKHEQKRANLFKG
NAKLPYIRPEEDPVLNDFKREMLFHRQAQSAVLEAIPRLHELGIKTRRPD
DYFAEMAKSDEHMQKVRANLMAKQQGQAKSERIKQIREQRKMGKMLAKQT
KVQREAEKKDMLDKLKKFRKGKLKNLDFLEDAKALESKQKQSAENRKKRN
KKFGFGGKKKGLKRNTKSSSAGLDGDKSSRRQRGVKAGASVNKRLGKSRR
IKAKGRK*

LD28980.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18419-PA 307 GF18419-PA 1..307 1..307 1388 94.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11795-PA 307 GG11795-PA 1..307 1..307 1581 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13979-PA 307 GH13979-PA 1..307 1..307 1363 88.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-PA 307 CG1542-PA 1..307 1..307 1549 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22322-PA 307 GI22322-PA 1..307 1..307 1368 89.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13543-PA 307 GL13543-PA 1..307 1..307 1340 90.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13714-PA 307 GA13714-PA 1..307 1..307 1340 90.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12926-PA 307 GM12926-PA 1..307 1..307 1576 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21564-PA 307 GD21564-PA 1..307 1..307 1580 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10510-PA 307 GJ10510-PA 1..307 1..307 1361 89.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22617-PA 307 GK22617-PA 1..307 1..307 1219 87 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10923-PA 307 GE10923-PA 1..307 1..307 1581 99.3 Plus

LD28980.hyp Sequence

Translation from 96 to 1019

> LD28980.hyp
MSDFEMEDSASGYDSGDNSDAELQAAFERGDLKPGLNVEFNGQRDKVNDV
TKLLAKTEAIKMQLPWLERLDMINTLAPLAPELAVQLEKHEQKRANLFKG
NAKLPYIRPEEDPVLNDFKREMLFHRQAQSAVLEAIPRLHELGIKTRRPD
DYFAEMAKSDEHMQKVRANLMAKQQGQAKSERIKQIREQRKMGKMLAKQT
KVQREAEKKDMLDKLKKFRKGKLKNLDFLEDAKALESKQKQSAENRKKRN
KKFGFGGKKKGLKRNTKSSSAGLDGDKSSRRQRGVKAGASVNKRLGKSRR
IKAKGRK*

LD28980.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-PA 307 CG1542-PA 1..307 1..307 1549 100 Plus