BDGP Sequence Production Resources |
Search the DGRC for LD28980
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 289 |
Well: | 80 |
Vector: | pOT2 |
Associated Gene/Transcript | CG1542-RA |
Protein status: | LD28980.pep: gold |
Preliminary Size: | 1447 |
Sequenced Size: | 1235 |
Gene | Date | Evidence |
---|---|---|
CG1542 | 2001-07-04 | Blastp of sequenced clone |
CG1542 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1542 | 2008-04-29 | Release 5.5 accounting |
CG1542 | 2008-08-15 | Release 5.9 accounting |
CG1542 | 2008-12-18 | 5.12 accounting |
1235 bp (1235 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051756
> LD28980.complete TAGACTTAGGCCAGCAACAATCGATAATTCTTATCCCCGCACGTGTTGAA ATTGTTTTCTTTTATTTGGATCAGATTTAATTTAGTTAATTCAGACATGT CGGACTTTGAAATGGAGGACAGTGCCTCGGGCTACGACTCAGGGGATAAC TCAGATGCCGAGCTGCAAGCGGCATTTGAGCGAGGCGACTTGAAACCAGG CCTAAATGTGGAATTCAATGGCCAGAGAGACAAAGTGAACGATGTGACCA AACTGCTGGCCAAGACAGAGGCTATCAAGATGCAACTGCCTTGGCTGGAA CGCCTGGACATGATCAACACACTAGCTCCACTGGCGCCGGAACTCGCTGT ACAGCTGGAGAAGCACGAGCAGAAGCGGGCCAATCTCTTCAAGGGCAACG CCAAGCTGCCCTACATTCGGCCCGAGGAGGATCCCGTCCTGAATGACTTC AAGAGGGAGATGCTCTTCCACCGACAGGCGCAAAGTGCTGTTCTGGAGGC CATTCCCCGCCTTCACGAGCTGGGCATAAAGACTCGTCGACCCGATGACT ACTTCGCTGAAATGGCCAAGTCCGACGAGCACATGCAGAAGGTGCGCGCC AACCTGATGGCCAAACAGCAAGGACAGGCGAAATCCGAGCGCATCAAGCA GATCCGCGAGCAGCGCAAGATGGGCAAGATGCTGGCCAAACAGACCAAGG TCCAACGCGAAGCCGAGAAGAAGGACATGCTGGACAAACTGAAGAAGTTC CGCAAGGGCAAGCTGAAAAACCTGGACTTCCTGGAGGACGCCAAGGCGCT TGAGTCCAAGCAGAAGCAGTCAGCCGAGAATCGCAAGAAGCGCAACAAGA AGTTCGGCTTCGGCGGCAAGAAGAAGGGCCTCAAGAGGAACACAAAGTCC TCCTCCGCGGGATTGGATGGCGACAAGTCCTCCAGGCGCCAGCGGGGCGT AAAGGCAGGTGCTTCGGTCAACAAGCGGCTTGGCAAATCGCGACGCATTA AGGCCAAGGGCAGAAAGTAATCCCCGGGACTGCCGACTATATTTAGGTGA CCAAACTCTAGTTTTATAAAGCCCCCAATCCTGTATAGATTTTTTAGACC CATAAATACATAACATTTTGTGTGCACACAGCCTTACTTTCGAAATGTGG AATACTCCGTATAGAATTTTAGAATTCCATGAGCAATTTTCATAAATTAC ATTTTTCTAACATCGTTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 27036202..27037173 | 246..1217 | 4845 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 27035837..27035998 | 1..162 | 810 | 100 | Plus |
chr3R | 27901430 | chr3R | 27036059..27036144 | 161..246 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 31213813..31214784 | 246..1217 | 4860 | 100 | Plus |
3R | 32079331 | 3R | 31213448..31213609 | 1..162 | 810 | 100 | Plus |
3R | 32079331 | 3R | 31213670..31213755 | 161..246 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 30954644..30955615 | 246..1217 | 4860 | 100 | Plus |
3R | 31820162 | 3R | 30954279..30954440 | 1..162 | 810 | 100 | Plus |
3R | 31820162 | 3R | 30954501..30954586 | 161..246 | 430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 27035837..27035998 | 1..162 | 100 | -> | Plus |
chr3R | 27036061..27036144 | 163..246 | 100 | -> | Plus |
chr3R | 27036203..27037173 | 247..1217 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1542-RA | 1..924 | 97..1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1542-RA | 1..924 | 97..1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1542-RA | 1..924 | 97..1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1542-RA | 1..924 | 97..1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1542-RA | 1..924 | 97..1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1542-RA | 39..1255 | 1..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1542-RA | 39..1255 | 1..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1542-RA | 1..1207 | 11..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1542-RA | 39..1255 | 1..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1542-RA | 1..1207 | 11..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31213448..31213609 | 1..162 | 100 | -> | Plus |
3R | 31213672..31213755 | 163..246 | 100 | -> | Plus |
3R | 31213814..31214784 | 247..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31213448..31213609 | 1..162 | 100 | -> | Plus |
3R | 31213672..31213755 | 163..246 | 100 | -> | Plus |
3R | 31213814..31214784 | 247..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31213448..31213609 | 1..162 | 100 | -> | Plus |
3R | 31213672..31213755 | 163..246 | 100 | -> | Plus |
3R | 31213814..31214784 | 247..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 27039170..27039331 | 1..162 | 100 | -> | Plus |
arm_3R | 27039394..27039477 | 163..246 | 100 | -> | Plus |
arm_3R | 27039536..27040506 | 247..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30954279..30954440 | 1..162 | 100 | -> | Plus |
3R | 30954503..30954586 | 163..246 | 100 | -> | Plus |
3R | 30954645..30955615 | 247..1217 | 100 | Plus |
Translation from 96 to 1019
> LD28980.pep MSDFEMEDSASGYDSGDNSDAELQAAFERGDLKPGLNVEFNGQRDKVNDV TKLLAKTEAIKMQLPWLERLDMINTLAPLAPELAVQLEKHEQKRANLFKG NAKLPYIRPEEDPVLNDFKREMLFHRQAQSAVLEAIPRLHELGIKTRRPD DYFAEMAKSDEHMQKVRANLMAKQQGQAKSERIKQIREQRKMGKMLAKQT KVQREAEKKDMLDKLKKFRKGKLKNLDFLEDAKALESKQKQSAENRKKRN KKFGFGGKKKGLKRNTKSSSAGLDGDKSSRRQRGVKAGASVNKRLGKSRR IKAKGRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18419-PA | 307 | GF18419-PA | 1..307 | 1..307 | 1388 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11795-PA | 307 | GG11795-PA | 1..307 | 1..307 | 1581 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13979-PA | 307 | GH13979-PA | 1..307 | 1..307 | 1363 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1542-PA | 307 | CG1542-PA | 1..307 | 1..307 | 1549 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22322-PA | 307 | GI22322-PA | 1..307 | 1..307 | 1368 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13543-PA | 307 | GL13543-PA | 1..307 | 1..307 | 1340 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13714-PA | 307 | GA13714-PA | 1..307 | 1..307 | 1340 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12926-PA | 307 | GM12926-PA | 1..307 | 1..307 | 1576 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21564-PA | 307 | GD21564-PA | 1..307 | 1..307 | 1580 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10510-PA | 307 | GJ10510-PA | 1..307 | 1..307 | 1361 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22617-PA | 307 | GK22617-PA | 1..307 | 1..307 | 1219 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10923-PA | 307 | GE10923-PA | 1..307 | 1..307 | 1581 | 99.3 | Plus |
Translation from 96 to 1019
> LD28980.hyp MSDFEMEDSASGYDSGDNSDAELQAAFERGDLKPGLNVEFNGQRDKVNDV TKLLAKTEAIKMQLPWLERLDMINTLAPLAPELAVQLEKHEQKRANLFKG NAKLPYIRPEEDPVLNDFKREMLFHRQAQSAVLEAIPRLHELGIKTRRPD DYFAEMAKSDEHMQKVRANLMAKQQGQAKSERIKQIREQRKMGKMLAKQT KVQREAEKKDMLDKLKKFRKGKLKNLDFLEDAKALESKQKQSAENRKKRN KKFGFGGKKKGLKRNTKSSSAGLDGDKSSRRQRGVKAGASVNKRLGKSRR IKAKGRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1542-PA | 307 | CG1542-PA | 1..307 | 1..307 | 1549 | 100 | Plus |