BDGP Sequence Production Resources |
Search the DGRC for LD29048
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 290 |
Well: | 48 |
Vector: | pOT2 |
Associated Gene/Transcript | dikar-RB |
Protein status: | LD29048.pep: gold |
Preliminary Size: | 3119 |
Sequenced Size: | 3013 |
Gene | Date | Evidence |
---|---|---|
CG32393 | 2001-07-04 | Blastp of sequenced clone |
dikar | 2008-04-29 | Release 5.5 accounting |
dikar | 2008-08-15 | Release 5.9 accounting |
dikar | 2008-12-18 | 5.12 accounting |
3013 bp (3013 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060386
> LD29048.complete AGCCACGATAATTTCTTCGCCGCGTTTGCTGCTCGCTGAAGAAAAATAAA ATTAACCAGGAGCGCAAAAAAACGCGAATCGCGTATTGTCTGCGCAGATA GCCAGATTAACGGGATCGAAACGGCCCGACTTCCACACCAGAGAGCTACT AAAGAGGCCCAGGAATTGTTCTTACTGACATCTATAAAATCCCGCAGAGG AGCAACGTTTCCAATAAGCAAGCATACATAAATGGTTTCTACTTTCATTG GATTATTAGACATTCAATCATGGTGGGAGATACCGTGTATTTCGCATTTC TGTTCATTGTTTAGTTCTGCCTTTGATCTGCCCGACATCGACATCGAGGA CCTCGAATCGGCGCTGCTCTCCGATGGTACCAGCGATGAGGATCAGGTCG CCCTAGTGCCCGAGTTAATTGTGCGCCTGCTCAAGGGCTGCGATGCGCTA CAGACGGTAGCCAAGGAAATCACACACAGCAACTATCAGATGTTCTTGCG TCGCTTCCTGCGCCAACAGTGTCGCCTGCACCAGACCGAGAACCACTTCG ACACGGACATTGACTTCCAGTCGCTGCCCGTGCGCAAGCGCCTGCACATT CTGCACGATCTGTGCCACTTTCGCCTGGACTCCGTCGATGTGCAGGTCAT CCTCAGCAATCTAGAGGCGGATAGTCTGCGCGTGGAGCCTCTGGGCTACG ACGCCAAGAATTCCGGCTACTGGTACTTCTACGGCACGCGACTATATCGG GAGGACAAAGCCACCGGTGGATCGGCCTCCTCCAGTTCGGGTTCGGGATC AGGTGGCGCTGGAGCCTCAACTGGCGGAGCATCCAACAGCAAGGGCATCG GCAGCAACGGTACAGTTTGGCAAGTCATCTGCTTCACCGAAGAGGACTGG CAAAACTTGGCCGCCAAGTTTAAGACCTCGACGAACGCCAAGGAGCGCGA ACTCTTTAACATACTCGATGACAACTTTCTGCCCAAGCTGCCGCAGCTTT TCCGCGAACGTGAGCGTTTGAGGCGTAGGAAACTTTTGCAAGTGCGCAAC TCCAGCCGCATTCGCAACATCGCGGAGTTGAAGGCACGCCAGGAGGAGGA GCGCCAGCGTCGTGAGCGGGAGAATCTCTACCAGGATCGGCAAAACGCAC ACTGGTTGGCACCGCCGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAG CAACAACAGCAGCAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCCA ATGTTCCTAGGAAGGCTGGCGGACGCGACGGCCACATCCATTCTACTCAC AGAGCGCGAATCAGAAACAAGACAGATACATTGAACTCACTTGCATACCA AAAGCATCTTTGATTTATTTTTTCAATTGATCTTTTGAGTTGCCGTAATT TTATAATTTCTTGAGCCAAAATACTCTTCGCTTACAATTTCTGTTGCTGC AGTTGAAAAGCCAAATCGCCATCATCAACATCGTCGATAAACCCAGGATC AGCATAGACGGAACAAGGATGAGCACTTAATTTCAGTTTTGCCCATCATT TAATTTTGTATATGGAAGAATTGGTTGGATTTCGTTTTCAAAAACAATCT ATCCCAGTCTACGTCGACAGCTAGTGGTATTTCAACCTACGCAAGCTCCC TGAGACGAACAACCACAACTAATTCGAGCGAATTTCTGTGCCACAGGGAA ACCTTCTGCCTCTCGCCAGAAAACGACGAAGACGACGACGACGACGACGA GGCCCTCGACGCGGAGCAGCAGTCCGATCAGCCAGAGCAGCAGCGGCAAC AAGAAGAGCAGCCGCCAGAAGAGGAGCAGCGGCAGGAACCAGAGGAATTA TTAGCAGTCTCAGCAACTGACGACGATTTTCGCTCTCCAGAAGCGCCGAA ATCGCAAACGCCTGCGGAATTGAAGAGCAAGAGTAGTCACCACCACCATC ATCATCACCACAAGAAGAAAAAGTCGAGCAAGAAGCAGAAGAAGCGACAT CATCGTGATAAAGGTCGTGAGCGGGACCGCGAGCATCATCATCATCATCG GCGGCGACACAAGCATGCTTCAGAGGCGGACGAAGGCGAGGACGACAACA ATAACCACAACAGCAACAGCAATAGCAACAGCAACACCAATAGCATCAGC AGCAACAATAGTGTCCAGCCAAAGCGAAGACGTAGTGGTCAGCAGCAGCA GCATCATCAGCAGGCAGAGACTACCGAGCCCAGCACTTCTCTAAGTCCCG AGGACAAGGAGAACTTTTGCAGGCAGCTGCAACTTCTGGACACCAATTCG GCGGCCATTGCAGTAGCCACAAGTATTGCCGATCTCAGTCTGCCCTCGCC GGTGGCACATGAGAGCGAAACCGAACAGGACGAGCAGGTTGATCAGCCGG CAGTAGTGGAAGCACAGCCACCAGCATTAACTTCTGCAATGGCGCCAGCG GCCAATGTCAAGTTGCCTGGCAGGCAGACGAACAATTCGCTCAGTTCGCT GACTGGAAACATTTTCATACCGTCGGGAAGCGCCCAACAGCAGCAGCAGC AATCCCAGGAGCCGCCGAGCAGCAGTAGCAGCAGCCAGAGTGGCACCACC ACGACTGCCAGCACTGTGCGTTCCAAGAAGCAGAAGGCCGTGCTCAACAG CAGCGGGAGCAGCAGCACAAGCAAAATGGCTGACAAGGCGGATCGCAACT TGAGCAAGACGGAGACGACGGGCAAGTCCAAGAAGTCGGCCGCGGGCTCA TCGGCGTCATCGTCCTCCAGCAAGGCGGAGCGCATCAGCGGTGCCTACTC GGACAAGAGTGGCGATGAGTAAGTGAGGGTGGACAGTTTCGATCCGCAGA CACAACACAATCGTACTATCCATATGCTCTTGGCACATTCTTTAATTATA TCTTATGCTTCTGCTTGCTGTTGGATGTGTGGGCATCATAGATTTACATC TTGATTAAGCTTAAATTAAATCGCAATCTTTTTCTCTAAAAGCTAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 6730904..6732297 | 2994..1601 | 6880 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 6733333..6734017 | 1031..347 | 3380 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 6732681..6733249 | 1600..1032 | 2755 | 98.9 | Minus |
chr3L | 24539361 | chr3L | 6734291..6734426 | 259..124 | 665 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 6735401..6735524 | 124..1 | 605 | 99.2 | Minus |
chr3L | 24539361 | chr3L | 6734077..6734168 | 349..258 | 460 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 6738527..6739921 | 2995..1601 | 6975 | 100 | Minus |
3L | 28110227 | 3L | 6740957..6741641 | 1031..347 | 3425 | 100 | Minus |
3L | 28110227 | 3L | 6740305..6740873 | 1600..1032 | 2845 | 100 | Minus |
3L | 28110227 | 3L | 6741915..6742050 | 259..124 | 680 | 100 | Minus |
3L | 28110227 | 3L | 6743026..6743149 | 124..1 | 620 | 100 | Minus |
3L | 28110227 | 3L | 6741701..6741792 | 349..258 | 460 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 6731627..6733021 | 2995..1601 | 6975 | 100 | Minus |
3L | 28103327 | 3L | 6734057..6734741 | 1031..347 | 3425 | 100 | Minus |
3L | 28103327 | 3L | 6733405..6733973 | 1600..1032 | 2845 | 100 | Minus |
3L | 28103327 | 3L | 6735015..6735150 | 259..124 | 680 | 100 | Minus |
3L | 28103327 | 3L | 6736126..6736249 | 124..1 | 620 | 100 | Minus |
3L | 28103327 | 3L | 6734801..6734892 | 349..258 | 460 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2528 | 2020..2236 | 303 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..3001 | 2033..2723 | 286 | 55.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..7200 | 1765..2157 | 273 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6849 | 2096..2235 | 268 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6867 | 2092..2212 | 226 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2566 | 1926..2138 | 191 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6846 | 2542..2673 | 161 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2390 | 2125..2219 | 154 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2374 | 2143..2212 | 131 | 67.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 6730904..6731312 | 2586..2994 | 99 | == | Minus |
chr3L | 6731364..6731739 | 2159..2534 | 99 | == | Minus |
chr3L | 6731807..6732297 | 1601..2091 | 94 | <- | Minus |
chr3L | 6732681..6733055 | 1226..1600 | 98 | == | Minus |
chr3L | 6733115..6733249 | 1032..1166 | 100 | <- | Minus |
chr3L | 6733333..6734015 | 349..1031 | 99 | <- | Minus |
chr3L | 6734078..6734166 | 260..348 | 100 | <- | Minus |
chr3L | 6734291..6734425 | 125..259 | 99 | <- | Minus |
chr3L | 6735401..6735524 | 1..124 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dikar-RB | 1..1029 | 232..1260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dikar-RD | 1..1007 | 232..1238 | 100 | == | Plus |
dikar-RD | 1008..2231 | 1601..2824 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dikar-RC | 1..1007 | 232..1238 | 100 | == | Plus |
dikar-RC | 1008..2225 | 1601..2818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dikar-RB | 1..1029 | 232..1260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dikar-RC | 1..1007 | 232..1238 | 100 | == | Plus |
dikar-RC | 1008..2225 | 1601..2818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dikar-RA | 1..1600 | 1..1600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dikar-RE | 1..2994 | 1..2994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dikar-RE | 16..3009 | 1..2994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dikar-RA | 1..1600 | 1..1600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dikar-RE | 16..3009 | 1..2994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6738528..6739921 | 1601..2994 | 100 | <- | Minus |
3L | 6740305..6740873 | 1032..1600 | 100 | <- | Minus |
3L | 6740957..6741639 | 349..1031 | 100 | <- | Minus |
3L | 6741702..6741790 | 260..348 | 100 | <- | Minus |
3L | 6741915..6742049 | 125..259 | 100 | <- | Minus |
3L | 6743026..6743149 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6738528..6739921 | 1601..2994 | 100 | <- | Minus |
3L | 6740305..6740873 | 1032..1600 | 100 | <- | Minus |
3L | 6740957..6741639 | 349..1031 | 100 | <- | Minus |
3L | 6741702..6741790 | 260..348 | 100 | <- | Minus |
3L | 6741915..6742049 | 125..259 | 100 | <- | Minus |
3L | 6743026..6743149 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6738528..6739921 | 1601..2994 | 100 | <- | Minus |
3L | 6740305..6740873 | 1032..1600 | 100 | <- | Minus |
3L | 6740957..6741639 | 349..1031 | 100 | <- | Minus |
3L | 6741702..6741790 | 260..348 | 100 | <- | Minus |
3L | 6741915..6742049 | 125..259 | 100 | <- | Minus |
3L | 6743026..6743149 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 6736126..6736249 | 1..124 | 100 | Minus | |
arm_3L | 6735015..6735149 | 125..259 | 100 | <- | Minus |
arm_3L | 6731628..6733021 | 1601..2994 | 100 | <- | Minus |
arm_3L | 6733405..6733973 | 1032..1600 | 100 | <- | Minus |
arm_3L | 6734057..6734739 | 349..1031 | 100 | <- | Minus |
arm_3L | 6734802..6734890 | 260..348 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6731628..6733021 | 1601..2994 | 100 | <- | Minus |
3L | 6733405..6733973 | 1032..1600 | 100 | <- | Minus |
3L | 6734057..6734739 | 349..1031 | 100 | <- | Minus |
3L | 6734802..6734890 | 260..348 | 100 | <- | Minus |
3L | 6735015..6735149 | 125..259 | 100 | <- | Minus |
3L | 6736126..6736249 | 1..124 | 100 | Minus |
Translation from 231 to 1259
> LD29048.pep MVSTFIGLLDIQSWWEIPCISHFCSLFSSAFDLPDIDIEDLESALLSDGT SDEDQVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFLRQQCRLH QTENHFDTDIDFQSLPVRKRLHILHDLCHFRLDSVDVQVILSNLEADSLR VEPLGYDAKNSGYWYFYGTRLYREDKATGGSASSSSGSGSGGAGASTGGA SNSKGIGSNGTVWQVICFTEEDWQNLAAKFKTSTNAKERELFNILDDNFL PKLPQLFRERERLRRRKLLQVRNSSRIRNIAELKARQEEERQRRERENLY QDRQNAHWLAPPQQQQQQQQQQQQQQQQSQQRTRRRLARQCS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10889-PA | 337 | GF10889-PA | 1..310 | 1..312 | 1292 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15027-PA | 346 | GG15027-PA | 1..346 | 1..342 | 1753 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15633-PA | 341 | GH15633-PA | 1..338 | 1..339 | 1178 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
dikar-PE | 342 | CG42799-PE | 1..342 | 1..342 | 1781 | 100 | Plus |
dikar-PB | 342 | CG32393-PB | 1..342 | 1..342 | 1781 | 100 | Plus |
dikar-PG | 3080 | CG42799-PG | 1..336 | 1..336 | 1750 | 100 | Plus |
dikar-PD | 3222 | CG42799-PD | 1..336 | 1..336 | 1750 | 100 | Plus |
dikar-PC | 3080 | CG42799-PC | 1..336 | 1..336 | 1750 | 100 | Plus |
dikar-PF | 3261 | CG42799-PF | 1..336 | 1..336 | 1750 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12679-PA | 339 | GI12679-PA | 1..336 | 1..339 | 1278 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13236-PA | 327 | GL13236-PA | 1..324 | 1..339 | 1213 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16868-PA | 327 | GA16868-PA | 1..324 | 1..339 | 1213 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13821-PA | 349 | GM13821-PA | 1..349 | 1..342 | 1798 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13112-PA | 344 | GD13112-PA | 1..344 | 1..342 | 1801 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12663-PA | 336 | GJ12663-PA | 1..333 | 1..339 | 1239 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12577-PA | 333 | GK12577-PA | 1..291 | 1..285 | 1227 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20470-PA | 348 | GE20470-PA | 1..348 | 1..342 | 1758 | 96.3 | Plus |
Translation from 231 to 1259
> LD29048.hyp MVSTFIGLLDIQSWWEIPCISHFCSLFSSAFDLPDIDIEDLESALLSDGT SDEDQVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFLRQQCRLH QTENHFDTDIDFQSLPVRKRLHILHDLCHFRLDSVDVQVILSNLEADSLR VEPLGYDAKNSGYWYFYGTRLYREDKATGGSASSSSGSGSGGAGASTGGA SNSKGIGSNGTVWQVICFTEEDWQNLAAKFKTSTNAKERELFNILDDNFL PKLPQLFRERERLRRRKLLQVRNSSRIRNIAELKARQEEERQRRERENLY QDRQNAHWLAPPQQQQQQQQQQQQQQQQSQQRTRRRLARQCS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
dikar-PE | 342 | CG42799-PE | 1..342 | 1..342 | 1781 | 100 | Plus |
dikar-PB | 342 | CG32393-PB | 1..342 | 1..342 | 1781 | 100 | Plus |
dikar-PG | 3080 | CG42799-PG | 1..336 | 1..336 | 1750 | 100 | Plus |
dikar-PC | 3080 | CG42799-PC | 1..336 | 1..336 | 1750 | 100 | Plus |
dikar-PD | 3222 | CG42799-PD | 1..336 | 1..336 | 1750 | 100 | Plus |