Clone LD29048 Report

Search the DGRC for LD29048

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:290
Well:48
Vector:pOT2
Associated Gene/Transcriptdikar-RB
Protein status:LD29048.pep: gold
Preliminary Size:3119
Sequenced Size:3013

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32393 2001-07-04 Blastp of sequenced clone
dikar 2008-04-29 Release 5.5 accounting
dikar 2008-08-15 Release 5.9 accounting
dikar 2008-12-18 5.12 accounting

Clone Sequence Records

LD29048.complete Sequence

3013 bp (3013 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060386

> LD29048.complete
AGCCACGATAATTTCTTCGCCGCGTTTGCTGCTCGCTGAAGAAAAATAAA
ATTAACCAGGAGCGCAAAAAAACGCGAATCGCGTATTGTCTGCGCAGATA
GCCAGATTAACGGGATCGAAACGGCCCGACTTCCACACCAGAGAGCTACT
AAAGAGGCCCAGGAATTGTTCTTACTGACATCTATAAAATCCCGCAGAGG
AGCAACGTTTCCAATAAGCAAGCATACATAAATGGTTTCTACTTTCATTG
GATTATTAGACATTCAATCATGGTGGGAGATACCGTGTATTTCGCATTTC
TGTTCATTGTTTAGTTCTGCCTTTGATCTGCCCGACATCGACATCGAGGA
CCTCGAATCGGCGCTGCTCTCCGATGGTACCAGCGATGAGGATCAGGTCG
CCCTAGTGCCCGAGTTAATTGTGCGCCTGCTCAAGGGCTGCGATGCGCTA
CAGACGGTAGCCAAGGAAATCACACACAGCAACTATCAGATGTTCTTGCG
TCGCTTCCTGCGCCAACAGTGTCGCCTGCACCAGACCGAGAACCACTTCG
ACACGGACATTGACTTCCAGTCGCTGCCCGTGCGCAAGCGCCTGCACATT
CTGCACGATCTGTGCCACTTTCGCCTGGACTCCGTCGATGTGCAGGTCAT
CCTCAGCAATCTAGAGGCGGATAGTCTGCGCGTGGAGCCTCTGGGCTACG
ACGCCAAGAATTCCGGCTACTGGTACTTCTACGGCACGCGACTATATCGG
GAGGACAAAGCCACCGGTGGATCGGCCTCCTCCAGTTCGGGTTCGGGATC
AGGTGGCGCTGGAGCCTCAACTGGCGGAGCATCCAACAGCAAGGGCATCG
GCAGCAACGGTACAGTTTGGCAAGTCATCTGCTTCACCGAAGAGGACTGG
CAAAACTTGGCCGCCAAGTTTAAGACCTCGACGAACGCCAAGGAGCGCGA
ACTCTTTAACATACTCGATGACAACTTTCTGCCCAAGCTGCCGCAGCTTT
TCCGCGAACGTGAGCGTTTGAGGCGTAGGAAACTTTTGCAAGTGCGCAAC
TCCAGCCGCATTCGCAACATCGCGGAGTTGAAGGCACGCCAGGAGGAGGA
GCGCCAGCGTCGTGAGCGGGAGAATCTCTACCAGGATCGGCAAAACGCAC
ACTGGTTGGCACCGCCGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAG
CAACAACAGCAGCAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCCA
ATGTTCCTAGGAAGGCTGGCGGACGCGACGGCCACATCCATTCTACTCAC
AGAGCGCGAATCAGAAACAAGACAGATACATTGAACTCACTTGCATACCA
AAAGCATCTTTGATTTATTTTTTCAATTGATCTTTTGAGTTGCCGTAATT
TTATAATTTCTTGAGCCAAAATACTCTTCGCTTACAATTTCTGTTGCTGC
AGTTGAAAAGCCAAATCGCCATCATCAACATCGTCGATAAACCCAGGATC
AGCATAGACGGAACAAGGATGAGCACTTAATTTCAGTTTTGCCCATCATT
TAATTTTGTATATGGAAGAATTGGTTGGATTTCGTTTTCAAAAACAATCT
ATCCCAGTCTACGTCGACAGCTAGTGGTATTTCAACCTACGCAAGCTCCC
TGAGACGAACAACCACAACTAATTCGAGCGAATTTCTGTGCCACAGGGAA
ACCTTCTGCCTCTCGCCAGAAAACGACGAAGACGACGACGACGACGACGA
GGCCCTCGACGCGGAGCAGCAGTCCGATCAGCCAGAGCAGCAGCGGCAAC
AAGAAGAGCAGCCGCCAGAAGAGGAGCAGCGGCAGGAACCAGAGGAATTA
TTAGCAGTCTCAGCAACTGACGACGATTTTCGCTCTCCAGAAGCGCCGAA
ATCGCAAACGCCTGCGGAATTGAAGAGCAAGAGTAGTCACCACCACCATC
ATCATCACCACAAGAAGAAAAAGTCGAGCAAGAAGCAGAAGAAGCGACAT
CATCGTGATAAAGGTCGTGAGCGGGACCGCGAGCATCATCATCATCATCG
GCGGCGACACAAGCATGCTTCAGAGGCGGACGAAGGCGAGGACGACAACA
ATAACCACAACAGCAACAGCAATAGCAACAGCAACACCAATAGCATCAGC
AGCAACAATAGTGTCCAGCCAAAGCGAAGACGTAGTGGTCAGCAGCAGCA
GCATCATCAGCAGGCAGAGACTACCGAGCCCAGCACTTCTCTAAGTCCCG
AGGACAAGGAGAACTTTTGCAGGCAGCTGCAACTTCTGGACACCAATTCG
GCGGCCATTGCAGTAGCCACAAGTATTGCCGATCTCAGTCTGCCCTCGCC
GGTGGCACATGAGAGCGAAACCGAACAGGACGAGCAGGTTGATCAGCCGG
CAGTAGTGGAAGCACAGCCACCAGCATTAACTTCTGCAATGGCGCCAGCG
GCCAATGTCAAGTTGCCTGGCAGGCAGACGAACAATTCGCTCAGTTCGCT
GACTGGAAACATTTTCATACCGTCGGGAAGCGCCCAACAGCAGCAGCAGC
AATCCCAGGAGCCGCCGAGCAGCAGTAGCAGCAGCCAGAGTGGCACCACC
ACGACTGCCAGCACTGTGCGTTCCAAGAAGCAGAAGGCCGTGCTCAACAG
CAGCGGGAGCAGCAGCACAAGCAAAATGGCTGACAAGGCGGATCGCAACT
TGAGCAAGACGGAGACGACGGGCAAGTCCAAGAAGTCGGCCGCGGGCTCA
TCGGCGTCATCGTCCTCCAGCAAGGCGGAGCGCATCAGCGGTGCCTACTC
GGACAAGAGTGGCGATGAGTAAGTGAGGGTGGACAGTTTCGATCCGCAGA
CACAACACAATCGTACTATCCATATGCTCTTGGCACATTCTTTAATTATA
TCTTATGCTTCTGCTTGCTGTTGGATGTGTGGGCATCATAGATTTACATC
TTGATTAAGCTTAAATTAAATCGCAATCTTTTTCTCTAAAAGCTAAAAAA
AAAAAAAAAAAAA

LD29048.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-RA 1610 dikar-RA 1..1600 1..1600 8000 100 Plus
dikar-RB 1578 dikar-RB 103..1578 125..1600 7380 100 Plus
CG32394.a 8915 CG32394.a 1..997 1822..2818 4985 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6730904..6732297 2994..1601 6880 99.6 Minus
chr3L 24539361 chr3L 6733333..6734017 1031..347 3380 99.6 Minus
chr3L 24539361 chr3L 6732681..6733249 1600..1032 2755 98.9 Minus
chr3L 24539361 chr3L 6734291..6734426 259..124 665 99.3 Minus
chr3L 24539361 chr3L 6735401..6735524 124..1 605 99.2 Minus
chr3L 24539361 chr3L 6734077..6734168 349..258 460 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6738527..6739921 2995..1601 6975 100 Minus
3L 28110227 3L 6740957..6741641 1031..347 3425 100 Minus
3L 28110227 3L 6740305..6740873 1600..1032 2845 100 Minus
3L 28110227 3L 6741915..6742050 259..124 680 100 Minus
3L 28110227 3L 6743026..6743149 124..1 620 100 Minus
3L 28110227 3L 6741701..6741792 349..258 460 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6731627..6733021 2995..1601 6975 100 Minus
3L 28103327 3L 6734057..6734741 1031..347 3425 100 Minus
3L 28103327 3L 6733405..6733973 1600..1032 2845 100 Minus
3L 28103327 3L 6735015..6735150 259..124 680 100 Minus
3L 28103327 3L 6736126..6736249 124..1 620 100 Minus
3L 28103327 3L 6734801..6734892 349..258 460 100 Minus
Blast to na_te.dros performed 2019-03-15 18:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2528 2020..2236 303 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..3001 2033..2723 286 55.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..7200 1765..2157 273 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6849 2096..2235 268 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6867 2092..2212 226 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2566 1926..2138 191 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6846 2542..2673 161 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2390 2125..2219 154 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2374 2143..2212 131 67.1 Plus

LD29048.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:28:00 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6730904..6731312 2586..2994 99 == Minus
chr3L 6731364..6731739 2159..2534 99 == Minus
chr3L 6731807..6732297 1601..2091 94 <- Minus
chr3L 6732681..6733055 1226..1600 98 == Minus
chr3L 6733115..6733249 1032..1166 100 <- Minus
chr3L 6733333..6734015 349..1031 99 <- Minus
chr3L 6734078..6734166 260..348 100 <- Minus
chr3L 6734291..6734425 125..259 99 <- Minus
chr3L 6735401..6735524 1..124 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:02 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 1..1029 232..1260 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:40 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RD 1..1007 232..1238 100 == Plus
dikar-RD 1008..2231 1601..2824 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:04:48 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RC 1..1007 232..1238 100 == Plus
dikar-RC 1008..2225 1601..2818 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:17 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 1..1029 232..1260 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:00 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RC 1..1007 232..1238 100 == Plus
dikar-RC 1008..2225 1601..2818 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:07 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RA 1..1600 1..1600 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:39 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RE 1..2994 1..2994 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:04:48 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RE 16..3009 1..2994 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:17 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RA 1..1600 1..1600 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:00 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RE 16..3009 1..2994 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:28:00 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6738528..6739921 1601..2994 100 <- Minus
3L 6740305..6740873 1032..1600 100 <- Minus
3L 6740957..6741639 349..1031 100 <- Minus
3L 6741702..6741790 260..348 100 <- Minus
3L 6741915..6742049 125..259 100 <- Minus
3L 6743026..6743149 1..124 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:28:00 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6738528..6739921 1601..2994 100 <- Minus
3L 6740305..6740873 1032..1600 100 <- Minus
3L 6740957..6741639 349..1031 100 <- Minus
3L 6741702..6741790 260..348 100 <- Minus
3L 6741915..6742049 125..259 100 <- Minus
3L 6743026..6743149 1..124 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:28:00 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6738528..6739921 1601..2994 100 <- Minus
3L 6740305..6740873 1032..1600 100 <- Minus
3L 6740957..6741639 349..1031 100 <- Minus
3L 6741702..6741790 260..348 100 <- Minus
3L 6741915..6742049 125..259 100 <- Minus
3L 6743026..6743149 1..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:04:48 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6736126..6736249 1..124 100   Minus
arm_3L 6735015..6735149 125..259 100 <- Minus
arm_3L 6731628..6733021 1601..2994 100 <- Minus
arm_3L 6733405..6733973 1032..1600 100 <- Minus
arm_3L 6734057..6734739 349..1031 100 <- Minus
arm_3L 6734802..6734890 260..348 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:49 Download gff for LD29048.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6731628..6733021 1601..2994 100 <- Minus
3L 6733405..6733973 1032..1600 100 <- Minus
3L 6734057..6734739 349..1031 100 <- Minus
3L 6734802..6734890 260..348 100 <- Minus
3L 6735015..6735149 125..259 100 <- Minus
3L 6736126..6736249 1..124 100   Minus

LD29048.pep Sequence

Translation from 231 to 1259

> LD29048.pep
MVSTFIGLLDIQSWWEIPCISHFCSLFSSAFDLPDIDIEDLESALLSDGT
SDEDQVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFLRQQCRLH
QTENHFDTDIDFQSLPVRKRLHILHDLCHFRLDSVDVQVILSNLEADSLR
VEPLGYDAKNSGYWYFYGTRLYREDKATGGSASSSSGSGSGGAGASTGGA
SNSKGIGSNGTVWQVICFTEEDWQNLAAKFKTSTNAKERELFNILDDNFL
PKLPQLFRERERLRRRKLLQVRNSSRIRNIAELKARQEEERQRRERENLY
QDRQNAHWLAPPQQQQQQQQQQQQQQQQSQQRTRRRLARQCS*

LD29048.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10889-PA 337 GF10889-PA 1..310 1..312 1292 89.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15027-PA 346 GG15027-PA 1..346 1..342 1753 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15633-PA 341 GH15633-PA 1..338 1..339 1178 72.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-PE 342 CG42799-PE 1..342 1..342 1781 100 Plus
dikar-PB 342 CG32393-PB 1..342 1..342 1781 100 Plus
dikar-PG 3080 CG42799-PG 1..336 1..336 1750 100 Plus
dikar-PD 3222 CG42799-PD 1..336 1..336 1750 100 Plus
dikar-PC 3080 CG42799-PC 1..336 1..336 1750 100 Plus
dikar-PF 3261 CG42799-PF 1..336 1..336 1750 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12679-PA 339 GI12679-PA 1..336 1..339 1278 78.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13236-PA 327 GL13236-PA 1..324 1..339 1213 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16868-PA 327 GA16868-PA 1..324 1..339 1213 77.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13821-PA 349 GM13821-PA 1..349 1..342 1798 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13112-PA 344 GD13112-PA 1..344 1..342 1801 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12663-PA 336 GJ12663-PA 1..333 1..339 1239 78.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12577-PA 333 GK12577-PA 1..291 1..285 1227 84.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20470-PA 348 GE20470-PA 1..348 1..342 1758 96.3 Plus

LD29048.hyp Sequence

Translation from 231 to 1259

> LD29048.hyp
MVSTFIGLLDIQSWWEIPCISHFCSLFSSAFDLPDIDIEDLESALLSDGT
SDEDQVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFLRQQCRLH
QTENHFDTDIDFQSLPVRKRLHILHDLCHFRLDSVDVQVILSNLEADSLR
VEPLGYDAKNSGYWYFYGTRLYREDKATGGSASSSSGSGSGGAGASTGGA
SNSKGIGSNGTVWQVICFTEEDWQNLAAKFKTSTNAKERELFNILDDNFL
PKLPQLFRERERLRRRKLLQVRNSSRIRNIAELKARQEEERQRRERENLY
QDRQNAHWLAPPQQQQQQQQQQQQQQQQSQQRTRRRLARQCS*

LD29048.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-PE 342 CG42799-PE 1..342 1..342 1781 100 Plus
dikar-PB 342 CG32393-PB 1..342 1..342 1781 100 Plus
dikar-PG 3080 CG42799-PG 1..336 1..336 1750 100 Plus
dikar-PC 3080 CG42799-PC 1..336 1..336 1750 100 Plus
dikar-PD 3222 CG42799-PD 1..336 1..336 1750 100 Plus