Clone LD29083 Report

Search the DGRC for LD29083

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:290
Well:83
Vector:pOT2
Associated Gene/Transcriptgny-RA
Protein status:LD29083.pep: gold
Preliminary Size:2846
Sequenced Size:2563

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5091 2001-01-01 Release 2 assignment
CG5096 2001-01-01 Release 2 assignment
CG5091 2001-07-04 Blastp of sequenced clone
CG5091 2008-04-29 Release 5.5 accounting
CG5091 2008-08-15 Release 5.9 accounting
CG5091 2008-12-18 5.12 accounting

Clone Sequence Records

LD29083.complete Sequence

2563 bp (2563 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051761

> LD29083.complete
CATCGCTGAAAAATGTTGGCAAAACAAAAAGATGAGATCCGAAATTTTGG
CAAGCGCCTTTTTGGGCCTGGCGGTTAGGTCGATTATCTCGCTGTACTCC
TACTCCGGCTTCGATTCCCCGCCGATGCATGGCGACTACGAGGCCCAGCG
CCACTGGCAAGAGATCACGGTCAATCTGGCAGTGGGGGAATGGTACACAA
ACAGCTCCAACAACGATCTTCAGTACTGGGGCCTGGATTATCCGCCTCTG
ACGGCCTACCACAGCTATTTGGTGGGTCGCATAGGAGCATCCATTGACCC
CCGCTTCGTCGAGCTGCACAAGAGCAGGGGATTCGAGTCGAAGGAGCACA
AACGCTTCATGCGCGCAACAGTTGTTTCTGCTGACGTGCTCATCTATTTG
CCGGCAATGTTGTTGCTGGCCTATTCCCTAGATAAAGCCTTTCGAAGCGA
TGATAAATTGTTCCTATTCACGCTGGTGGCCGCGTATCCCGGACAAACAC
TCATCGACAATGGACACTTTCAGTATAATAATATATCACTGGGCTTTGCC
GCCGTGGCAATTGCCGCAATCTTGCGAAGAAGATTCTACGCGGCTGCATT
TTTCTTCACTTTAGCCCTTAATTATAAGCAAATGGAGCTGTATCACAGCT
TGCCGTTCTTTGCGTTCCTTCTGGGTGAATGTGTAAGCCAAAAAAGCTTT
GCTTCTTTTATCGCTGAAATCTCACGGATAGCAGCCGTTGTCTTAGGAAC
ATTTGCTATTTTATGGGTTCCTTGGTTGGGATCTCTGCAGGCCGTACTTC
AAGTACTCCATCGCCTGTTTCCTGTCGCCCGAGGAGTTTTTGAGGACAAG
GTGGCCAATGTTTGGTGTGCCGTCAACGTAGTTTGGAAACTAAAGAAGCA
TATCAGCAATGACCAAATGGCCCTTGTGTGCATTGCATGCACGTTAATTG
CATCTTTGCCAACAAATGTACTACTCTTTCGAAGGCGAACTAATGTCGGA
TTTCTATTAGCGCTTTTCAACACGAGCCTGGCATTCTTCTTGTTTTCATT
TCAAGTGCACGAGAAGACCATTTTGCTGACTGCTTTACCAGCACTTTTCC
TACTTAAGTGCTGGCCCGACGAAATGATTTTATTTCTGGAAGTTACCGTA
TTCAGCATGTTGCCTCTTCTAGCAAGAGATGAATTGTTGGTGCCCGCCGT
AGTGGCCACTGTGGCTTTTCATTTGATATTCAAATGTTTTGATTCAAAGT
CGAAGCTCAGCAACGAATATCCACTGAAGTACATTGCAAATATATCGCAG
ATTCTGATGATCAGTGTTGTGGTTGCTTCTCTGACCGTTCCGGCACCTAC
AAAGTATCCAGATCTTTGGCCCCTTATTATTTCGGTTACAAGCTGTGGAC
ACTTCTTCTTGTTTTTCTTGTGGGGAAATGTTCAACAATTTAGCAGCAAG
TTAAGTTAGTTTCTAAGATAAGCATTCCATAACAATATCTACAACATAAG
CCAAAGAAATGTTTGTAAGCCCTTTATCGAGTCTTGTTTTATTTTGTGCC
AATTATGTTTAATTTAAGCAGTTAATTCAAGGTGAAATAAGGTATTTGGG
TATAAATGGCTTAGTCACTTCCAATACTCTTATAGCCCTTTTCCCGTATC
TTATCATGGATTTAATCAGCGTATAGTGTCTACACTATGCACAAAGGGTA
CTAGTGTGGATATAAACCAAAATAATTCAGAATTAATATTGTAAAAAGAT
TCACTTGCTTAAAATATGTGAATTTTGGTTTTAATCTTATTGAATTTAAT
TTTAACGCATTTCGAAAGTCGAATGACCCACAAAAGCGACTATTTTGTTG
GATAGTGTATCAATGCTTTTGAAGAGATAAGATAAGATAACTCGTGAAAT
ATTAGGTGAATAATATGTGGGGTTTTGTTCATTGTGCTCTTGTTAGTTAT
GTACAGTTAATCGATCGGTGAACACGCCTATAGTTCAATTTTAGTTGGCA
AAAGAATTTTGAGAACTATGAATTTAACAAAATCAGCTACGTTAGCTGCT
GCGATTTTTTGTATCGTTTTGAGCCAAGTTTCTGGGCAGACGAAAGATGA
AACCACCACAACCGAGACGCCAAAGGTACCACATAAAGTGTTTAATTTTT
AATTTTCTGAAATTGGTGTGGGTGTGCGTATTACGAATGCAATTGTAAAC
TGAATAATAAAGCCGATTACATTACCAATGGAATTGATACATATAGTTAG
ATTTCAAATATCATTTGTGCAACTTAACTAAAAAGATATGTGCATACTGC
TGTAAATTAGTGAACAGATTATGTTAAATTGTGTTAAATATTTGTGAAAG
TAATAGAATGACTAAATTATATGTATCACTATCAAATTCGTGATAAGAAA
AAGTCTTGCAAAGCTAAATCGATAAAGATGACTCAAAGAAAGACCGAAAA
ATTCACCACACAAAAAATTTAAAAAAAAATGAGAACAGTGTGTAATATAA
ATAAGTTGTTTAAAAATCGCAATAAAATTTAATTTAATTTCTAAAAAAAA
AAAAAAAAAAAAA

LD29083.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5091-RA 2661 CG5091-RA 119..2661 1..2543 12715 100 Plus
CG5096-RA 1666 CG5096-RA 1..196 1931..2126 980 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10380237..10381724 1055..2542 7440 100 Plus
chr2L 23010047 chr2L 10378978..10379673 1..696 3450 99.7 Plus
chr2L 23010047 chr2L 10379771..10379971 695..895 990 99.5 Plus
chr2L 23010047 chr2L 10380023..10380184 895..1056 810 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10381377..10382865 1055..2543 7445 100 Plus
2L 23513712 2L 10380118..10380813 1..696 3480 100 Plus
2L 23513712 2L 10380911..10381111 695..895 1005 100 Plus
2L 23513712 2L 10381163..10381324 895..1056 810 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10381377..10382865 1055..2543 7445 100 Plus
2L 23513712 2L 10380118..10380813 1..696 3480 100 Plus
2L 23513712 2L 10380911..10381111 695..895 1005 100 Plus
2L 23513712 2L 10381163..10381324 895..1056 810 100 Plus
Blast to na_te.dros performed 2019-03-16 02:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 697..804 2422..2532 134 59.5 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 2892..3003 1699..1812 124 59.1 Plus
Doc2-element 4789 Doc2-element DOC2 4789bp 3762..3830 1933..1866 117 65.2 Minus

LD29083.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:25:35 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10380237..10381724 1055..2542 100   Plus
chr2L 10378978..10379673 1..696 99 -> Plus
chr2L 10379773..10379970 697..894 99 -> Plus
chr2L 10380023..10380182 895..1054 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:06 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 1..1428 32..1459 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:25 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 1..1428 32..1459 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:36:18 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
gny-RA 1..1428 32..1459 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:03 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 1..1428 32..1459 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:09:35 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
gny-RA 1..1428 32..1459 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:16:47 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 1..2542 1..2542 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:25 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 1..2542 1..2542 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:36:18 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
gny-RA 16..2557 1..2542 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:03 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 1..2542 1..2542 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:09:35 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
gny-RA 16..2557 1..2542 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:35 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10380118..10380813 1..696 100 -> Plus
2L 10380913..10381110 697..894 100 -> Plus
2L 10381163..10381322 895..1054 100 -> Plus
2L 10381377..10382864 1055..2542 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:35 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10380118..10380813 1..696 100 -> Plus
2L 10380913..10381110 697..894 100 -> Plus
2L 10381163..10381322 895..1054 100 -> Plus
2L 10381377..10382864 1055..2542 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:35 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10380118..10380813 1..696 100 -> Plus
2L 10380913..10381110 697..894 100 -> Plus
2L 10381163..10381322 895..1054 100 -> Plus
2L 10381377..10382864 1055..2542 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:36:18 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10380118..10380813 1..696 100 -> Plus
arm_2L 10380913..10381110 697..894 100 -> Plus
arm_2L 10381163..10381322 895..1054 100 -> Plus
arm_2L 10381377..10382864 1055..2542 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:33 Download gff for LD29083.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10380118..10380813 1..696 100 -> Plus
2L 10380913..10381110 697..894 100 -> Plus
2L 10381163..10381322 895..1054 100 -> Plus
2L 10381377..10382864 1055..2542 100   Plus

LD29083.hyp Sequence

Translation from 0 to 1458

> LD29083.hyp
IAEKCWQNKKMRSEILASAFLGLAVRSIISLYSYSGFDSPPMHGDYEAQR
HWQEITVNLAVGEWYTNSSNNDLQYWGLDYPPLTAYHSYLVGRIGASIDP
RFVELHKSRGFESKEHKRFMRATVVSADVLIYLPAMLLLAYSLDKAFRSD
DKLFLFTLVAAYPGQTLIDNGHFQYNNISLGFAAVAIAAILRRRFYAAAF
FFTLALNYKQMELYHSLPFFAFLLGECVSQKSFASFIAEISRIAAVVLGT
FAILWVPWLGSLQAVLQVLHRLFPVARGVFEDKVANVWCAVNVVWKLKKH
ISNDQMALVCIACTLIASLPTNVLLFRRRTNVGFLLALFNTSLAFFLFSF
QVHEKTILLTALPALFLLKCWPDEMILFLEVTVFSMLPLLARDELLVPAV
VATVAFHLIFKCFDSKSKLSNEYPLKYIANISQILMISVVVASLTVPAPT
KYPDLWPLIISVTSCGHFFLFFLWGNVQQFSSKLS*

LD29083.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
gny-PB 475 CG5091-PB 1..475 11..485 2445 100 Plus
gny-PA 475 CG5091-PA 1..475 11..485 2445 100 Plus
xit-PA 511 CG4542-PA 21..498 40..482 367 28.4 Plus

LD29083.pep Sequence

Translation from 31 to 1458

> LD29083.pep
MRSEILASAFLGLAVRSIISLYSYSGFDSPPMHGDYEAQRHWQEITVNLA
VGEWYTNSSNNDLQYWGLDYPPLTAYHSYLVGRIGASIDPRFVELHKSRG
FESKEHKRFMRATVVSADVLIYLPAMLLLAYSLDKAFRSDDKLFLFTLVA
AYPGQTLIDNGHFQYNNISLGFAAVAIAAILRRRFYAAAFFFTLALNYKQ
MELYHSLPFFAFLLGECVSQKSFASFIAEISRIAAVVLGTFAILWVPWLG
SLQAVLQVLHRLFPVARGVFEDKVANVWCAVNVVWKLKKHISNDQMALVC
IACTLIASLPTNVLLFRRRTNVGFLLALFNTSLAFFLFSFQVHEKTILLT
ALPALFLLKCWPDEMILFLEVTVFSMLPLLARDELLVPAVVATVAFHLIF
KCFDSKSKLSNEYPLKYIANISQILMISVVVASLTVPAPTKYPDLWPLII
SVTSCGHFFLFFLWGNVQQFSSKLS*

LD29083.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15776-PA 479 GF15776-PA 1..473 1..473 1850 72.9 Plus
Dana\GF21165-PA 514 GF21165-PA 21..357 30..347 312 29.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10119-PA 475 GG10119-PA 1..475 1..475 2285 89.9 Plus
Dere\GG19614-PA 513 GG19614-PA 21..357 30..347 311 30.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13362-PA 483 GH13362-PA 1..477 1..472 1540 61.8 Plus
Dgri\GH24530-PA 509 GH24530-PA 27..390 35..378 283 27.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
gny-PB 475 CG5091-PB 1..475 1..475 2445 100 Plus
gny-PA 475 CG5091-PA 1..475 1..475 2445 100 Plus
xit-PA 511 CG4542-PA 21..498 30..472 367 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18289-PA 474 GI18289-PA 1..474 1..471 1501 57.6 Plus
Dmoj\GI21610-PA 515 GI21610-PA 27..401 35..388 279 26.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19144-PA 475 GL19144-PA 1..471 1..473 1624 63.4 Plus
Dper\GL26756-PA 492 GL26756-PA 30..406 35..388 317 28.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18653-PA 475 GA18653-PA 1..471 1..473 1626 63.4 Plus
Dpse\GA18244-PA 523 GA18244-PA 35..450 35..419 315 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18280-PA 475 GM18280-PA 1..475 1..475 2430 96.4 Plus
Dsec\GM12534-PA 511 GM12534-PA 21..401 30..388 323 30.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23688-PA 410 GD23688-PA 1..410 1..475 1845 80 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15406-PA 474 GJ15406-PA 1..474 1..471 1501 59.7 Plus
Dvir\GJ16548-PA 513 GJ16548-PA 27..401 35..388 261 27.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18996-PA 214 GK18996-PA 3..213 11..221 767 66.4 Plus
Dwil\GK10271-PA 521 GK10271-PA 33..408 35..388 294 27.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18933-PA 475 GE18933-PA 1..475 1..475 2256 90.5 Plus
Dyak\GE16775-PA 506 GE16775-PA 21..357 30..347 316 30.8 Plus