Clone LD29090 Report

Search the DGRC for LD29090

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:290
Well:90
Vector:pOT2
Associated Gene/TranscriptDNApol-iota-RA
Protein status:LD29090.pep: gold
Preliminary Size:2724
Sequenced Size:2578

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7602 2001-01-01 Release 2 assignment
CG7602 2001-07-04 Blastp of sequenced clone
CG7602 2003-01-01 Sim4 clustering to Release 3
DNApol-iota 2008-04-29 Release 5.5 accounting
DNApol-iota 2008-08-15 Release 5.9 accounting
DNApol-iota 2008-12-18 5.12 accounting

Clone Sequence Records

LD29090.complete Sequence

2578 bp (2578 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051762

> LD29090.complete
ATTAAAAGTAATATTTTACTGCAGTTCCGTGCATTTCGTCTTTAAATCGT
CTTATTTAGATACACCGGCGCTTAGAACCGTTATGGACTTCGCTAGCGTA
CTCGGTAAGAGCGAGGCGCATCAGCGCACCATTATCCACCTGGACATGGA
CTACTTCTACGCTCAGGTGGAGGAGATTCGGGATCCAACGTTGCGGTCGA
AGGCCCTGGGCATTCAGCAGAAGAACATCGTGGTCACCTGCAACTATGTG
GCGCGGGCCAAAGGAGTGACAAAATTGATGCTTATTGCAGAGGCACAGCG
CATCTGTCCCGATTTGGTTCTTGTCAATGGAGAAGACCTCGCCCCTTATC
GGCAGATGTCGCAAAGAATCTTTGACCTCCTGCTTAACTACACTCCCCTA
GTGGAGAAGCTAGGCTTCGATGAGAACTTTATGGATGTGACTGCACTTGT
AGAACTGCGACAGGCTCACGTTGCTGAGGCCCTGTTGAGACCACCGGTGG
GTCATACGTATCCGGCGGATGGTACTCCCTTGTCAAATTGCGATTGTGGC
TGTGCCCAGCGGCTGGCCATCGGCACTCGGATCGCCCAGGAAATCAGGGA
GGAGCTCAAGCTCCGGCTGGGAATTACCTGCTGCGCTGGAATCGCCTATA
ACAAGCTACTGGCCAAGCTAGTCGGCAGTAGTCATGAGCCAAATCAGCAG
ACCGTTCTTGTTTCCACCTATGCAGAGCAGTTCATGCGGGAACTGGGCGA
CCTAAAGCGAGTCACTGGGATTGGGCAGAAGACGCAGTGCCTTCTCCTGG
AGGCGGGTATGTCATCCGTCGAGCAGCTGCAGCAGTGCGACATGGACGTA
ATGCGGAAGAAATTTGGATTTGAAACTGCCACCCGACTGCGAGATCTGGC
CTTTGGCCGTGACACGAGCTTAGTCCGTCCCAGCGGAAAACCCAAGACCA
TTGGAATGGAAGATGCCTGTAAGCCAATATCCGTGCGTACCGATGTGGAG
GAAAGGTTTCGCATGCTGCTCAAGCGGCTGGTGGAGCAAGTTGCAGAGGA
TGGACGCGTTCCCATTGCCATCAAGGTCGTGTTGCGCAAGTTCGACTCGC
AAAAGAAGAGCAGCCACCGTGAGACCAAACAGGCCAACATTCTACCCTCC
CTTTTTAAGACCTCCATGTGTCCAGGAGAAACTGGTGTGAGCAAGGTACA
ACTGGCGGATGGCGCCCAGGATAAACTCCTCAAGATTGTGATGCGACTTT
TTGAGCGAATTGTTGATATGAGCAAGCCCTTCAACATCACTCTACTAGGC
CTCGCATTCTCCAAGTTCCAGGAGCGCAAGGTTGGCTCCTCATCAATTGC
TAATTTCCTGATCAAAAAGGCGGATCTGGAGGTGCAGTCTATCACCTCAC
TGACAAATACGAGTCTCACAAGTCCCACAGCGGAGAGTCCCACATCAGAC
GAGTGCGCCTTCCGCTCCTCGCCAACAACATTCAAACCCAGCGATCAGTT
CTATAGGAGAAGAGCCACTACTGCATCACCTGTGCCCATGCTACTTGATA
ATGGTTCCGAATCAGCGGCCACCAATTCGGATTTCAGCGACTTCTCTGAG
ACTGAGGTGGAACCCTCGCCGAAAAAGAGTCGCATTGGCCGATTACTTGT
TTCTAAGCGCAGCCGCTTGGCGGCGGATGTGGGAGATTCCGCCGCCGAAG
TAGCTTCGCCCAGCAAACTGCGTGTCTGTGATCTGCGCCTCAACTCGCGG
GATAGCGAGAAAGACTTTCCCATGAGCACCACGCCTTCTACCTCTACGTC
CGCGCCTGCGCCTCGCTTCCGCACCGTCCAGCCACCAAACACGTTGCTGC
AACGGATCGACGGCAGTCTACGCTTTGTTACGACGCGCACTGCCAGTCGC
TTGAGCTCAAATGCTAGTTCTACGGCATCCTCGCCGCTTCCTTCTCCCAT
GGACGACTCCATAGCCATGAGCGCACCCAGCACAACAACCTTGCCATTTC
CCTCACCCACCACGACAGCGGTGGTCACCAGCAGTAGTAGTACGGCCACG
TGTGATGCCCTAACGAATATAGTTTGTCCAGCGGGTGTGGATGCCGAGGT
GTTCAAAGAGCTACCCGTGGAGCTGCAGACGGAGTTGATCGCATCGTGGC
GCAGCTCCCTGGTGGCGGCTGTTGAGCAAACGAATGGGACCGGTGCCGCT
ACAAGCGCAGCTATCGCCAGTGGAGCCCCAGCAACTGCCACAACCGCCAG
CGGACAAAAGAACACTTTGTATCGCTACTTTCTCCGGAATAAGTGATGCA
GTGTATCCGAGCATCACATCGTTTTTAGTTATAATGGTAAAGAGAATAAA
TTTGTTTAAATATATGATATATTTTTGTAGGTATACGGTTACAGAGTGCA
TGCTTTAGGGTGCCGCATTGGACGAACATAAGCTAGGATAAATAACTAGT
GGGTTTCTTGAACTGAATGAGTGATTTTGTTAAGTTTATAATACCGAAGA
ATGTCATTAGATAACCGCATTTTCATTTAACAAGTTTTAATCTTCGCTAA
TTTATAAAAAAAAAAAAAAAAAAAAAAA

LD29090.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-iota-RA 3189 DNApol-iota-RA 45..2603 1..2559 12795 100 Plus
DNApol-iota.a 2569 DNApol-iota.a 7..2569 1..2559 12730 99.8 Plus
DNApol-iota.b 2569 DNApol-iota.b 68..2569 58..2559 12510 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4061298..4062813 1040..2555 7580 100 Plus
chr3R 27901430 chr3R 4060261..4061235 67..1041 4860 99.9 Plus
chr3R 27901430 chr3R 4059593..4059660 1..68 340 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8235287..8236806 1040..2559 7600 100 Plus
3R 32079331 3R 8234250..8235224 67..1041 4875 100 Plus
3R 32079331 3R 8233580..8233647 1..68 340 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7976118..7977637 1040..2559 7600 100 Plus
3R 31820162 3R 7975081..7976055 67..1041 4875 100 Plus
3R 31820162 3R 7974411..7974478 1..68 340 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:53:43 has no hits.

LD29090.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:54:26 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4059593..4059659 1..67 100 -> Plus
chr3R 4060262..4061233 68..1039 99 -> Plus
chr3R 4061298..4062813 1040..2555 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:07 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-iota-RA 1..2214 83..2296 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:33 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-iota-RA 1..2214 83..2296 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:07:31 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-iota-RB 1..2214 83..2296 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:10 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-iota-RA 1..2214 83..2296 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:05 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-iota-RB 1..2214 83..2296 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:16:58 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-iota-RA 21..2575 1..2555 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:33 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-iota-RA 21..2575 1..2555 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:31 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-iota-RA 68..2622 1..2555 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:11 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-iota-RA 21..2575 1..2555 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:05 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-iota-RA 68..2622 1..2555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:54:26 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8233580..8233646 1..67 100 -> Plus
3R 8234251..8235222 68..1039 100 -> Plus
3R 8235287..8236802 1040..2555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:54:26 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8233580..8233646 1..67 100 -> Plus
3R 8234251..8235222 68..1039 100 -> Plus
3R 8235287..8236802 1040..2555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:54:26 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8233580..8233646 1..67 100 -> Plus
3R 8234251..8235222 68..1039 100 -> Plus
3R 8235287..8236802 1040..2555 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:31 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4059302..4059368 1..67 100 -> Plus
arm_3R 4059973..4060944 68..1039 100 -> Plus
arm_3R 4061009..4062524 1040..2555 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:41 Download gff for LD29090.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7974411..7974477 1..67 100 -> Plus
3R 7975082..7976053 68..1039 100 -> Plus
3R 7976118..7977633 1040..2555 100   Plus

LD29090.hyp Sequence

Translation from 0 to 2295

> LD29090.hyp
LKVIFYCSSVHFVFKSSYLDTPALRTVMDFASVLGKSEAHQRTIIHLDMD
YFYAQVEEIRDPTLRSKALGIQQKNIVVTCNYVARAKGVTKLMLIAEAQR
ICPDLVLVNGEDLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV
ELRQAHVAEALLRPPVGHTYPADGTPLSNCDCGCAQRLAIGTRIAQEIRE
ELKLRLGITCCAGIAYNKLLAKLVGSSHEPNQQTVLVSTYAEQFMRELGD
LKRVTGIGQKTQCLLLEAGMSSVEQLQQCDMDVMRKKFGFETATRLRDLA
FGRDTSLVRPSGKPKTIGMEDACKPISVRTDVEERFRMLLKRLVEQVAED
GRVPIAIKVVLRKFDSQKKSSHRETKQANILPSLFKTSMCPGETGVSKVQ
LADGAQDKLLKIVMRLFERIVDMSKPFNITLLGLAFSKFQERKVGSSSIA
NFLIKKADLEVQSITSLTNTSLTSPTAESPTSDECAFRSSPTTFKPSDQF
YRRRATTASPVPMLLDNGSESAATNSDFSDFSETEVEPSPKKSRIGRLLV
SKRSRLAADVGDSAAEVASPSKLRVCDLRLNSRDSEKDFPMSTTPSTSTS
APAPRFRTVQPPNTLLQRIDGSLRFVTTRTASRLSSNASSTASSPLPSPM
DDSIAMSAPSTTTLPFPSPTTTAVVTSSSSTATCDALTNIVCPAGVDAEV
FKELPVELQTELIASWRSSLVAAVEQTNGTGAATSAAIASGAPATATTAS
GQKNTLYRYFLRNK*

LD29090.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-iota-PC 737 CG7602-PC 1..737 28..764 3699 100 Plus
DNApol-iota-PA 737 CG7602-PA 1..737 28..764 3699 100 Plus
DNApol-iota-PB 737 CG7602-PB 1..737 28..764 3699 100 Plus
DNApol-eta-PA 885 CG7143-PA 14..346 40..332 314 29.1 Plus

LD29090.pep Sequence

Translation from 82 to 2295

> LD29090.pep
MDFASVLGKSEAHQRTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNIV
VTCNYVARAKGVTKLMLIAEAQRICPDLVLVNGEDLAPYRQMSQRIFDLL
LNYTPLVEKLGFDENFMDVTALVELRQAHVAEALLRPPVGHTYPADGTPL
SNCDCGCAQRLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSS
HEPNQQTVLVSTYAEQFMRELGDLKRVTGIGQKTQCLLLEAGMSSVEQLQ
QCDMDVMRKKFGFETATRLRDLAFGRDTSLVRPSGKPKTIGMEDACKPIS
VRTDVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKKSSHRETKQ
ANILPSLFKTSMCPGETGVSKVQLADGAQDKLLKIVMRLFERIVDMSKPF
NITLLGLAFSKFQERKVGSSSIANFLIKKADLEVQSITSLTNTSLTSPTA
ESPTSDECAFRSSPTTFKPSDQFYRRRATTASPVPMLLDNGSESAATNSD
FSDFSETEVEPSPKKSRIGRLLVSKRSRLAADVGDSAAEVASPSKLRVCD
LRLNSRDSEKDFPMSTTPSTSTSAPAPRFRTVQPPNTLLQRIDGSLRFVT
TRTASRLSSNASSTASSPLPSPMDDSIAMSAPSTTTLPFPSPTTTAVVTS
SSSTATCDALTNIVCPAGVDAEVFKELPVELQTELIASWRSSLVAAVEQT
NGTGAATSAAIASGAPATATTASGQKNTLYRYFLRNK*

LD29090.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18848-PA 732 GF18848-PA 1..732 1..737 3384 88.7 Plus
Dana\GF23499-PA 876 GF23499-PA 14..346 13..305 332 29.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23702-PA 737 GG23702-PA 1..737 1..737 3811 96.9 Plus
Dere\GG13193-PA 890 GG13193-PA 14..346 13..305 328 28.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18329-PA 758 GH18329-PA 1..758 1..737 2960 77.3 Plus
Dgri\GH17135-PA 871 GH17135-PA 7..347 5..305 332 29.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-iota-PC 737 CG7602-PC 1..737 1..737 3699 100 Plus
DNApol-iota-PA 737 CG7602-PA 1..737 1..737 3699 100 Plus
DNApol-iota-PB 737 CG7602-PB 1..737 1..737 3699 100 Plus
DNApol-eta-PA 885 CG7143-PA 14..346 13..305 314 29.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23309-PA 749 GI23309-PA 1..749 1..737 3023 79.8 Plus
Dmoj\GI11744-PA 894 GI11744-PA 7..347 5..305 324 28.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24261-PA 759 GL24261-PA 1..759 1..737 3214 83.3 Plus
Dper\GL25322-PA 892 GL25322-PA 14..346 13..305 336 30.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20473-PA 761 GA20473-PA 1..761 1..737 3245 83.5 Plus
Dpse\GA20133-PA 894 GA20133-PA 14..346 13..305 336 30.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23708-PA 735 GM23708-PA 1..735 1..737 3823 98.1 Plus
Dsec\GM22104-PA 889 GM22104-PA 14..346 13..305 324 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18521-PA 712 GD18521-PA 3..712 26..737 3663 97.6 Plus
Dsim\GD12080-PA 889 GD12080-PA 14..346 13..305 320 29.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24165-PA 749 GJ24165-PA 1..749 1..737 2989 80.1 Plus
Dvir\GJ11416-PA 871 GJ11416-PA 7..347 5..305 320 28.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14382-PA 735 GK14382-PA 1..735 1..737 3051 81.4 Plus
Dwil\GK12166-PA 864 GK12166-PA 14..451 13..413 303 26.2 Plus
Dwil\GK17515-PA 1022 GK17515-PA 325..574 21..309 195 23.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25854-PA 737 GE25854-PA 1..737 1..737 3805 97 Plus
Dyak\GE19515-PA 895 GE19515-PA 14..346 13..305 326 28.9 Plus