BDGP Sequence Production Resources |
Search the DGRC for LD29090
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 290 |
Well: | 90 |
Vector: | pOT2 |
Associated Gene/Transcript | DNApol-iota-RA |
Protein status: | LD29090.pep: gold |
Preliminary Size: | 2724 |
Sequenced Size: | 2578 |
Gene | Date | Evidence |
---|---|---|
CG7602 | 2001-01-01 | Release 2 assignment |
CG7602 | 2001-07-04 | Blastp of sequenced clone |
CG7602 | 2003-01-01 | Sim4 clustering to Release 3 |
DNApol-iota | 2008-04-29 | Release 5.5 accounting |
DNApol-iota | 2008-08-15 | Release 5.9 accounting |
DNApol-iota | 2008-12-18 | 5.12 accounting |
2578 bp (2578 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051762
> LD29090.complete ATTAAAAGTAATATTTTACTGCAGTTCCGTGCATTTCGTCTTTAAATCGT CTTATTTAGATACACCGGCGCTTAGAACCGTTATGGACTTCGCTAGCGTA CTCGGTAAGAGCGAGGCGCATCAGCGCACCATTATCCACCTGGACATGGA CTACTTCTACGCTCAGGTGGAGGAGATTCGGGATCCAACGTTGCGGTCGA AGGCCCTGGGCATTCAGCAGAAGAACATCGTGGTCACCTGCAACTATGTG GCGCGGGCCAAAGGAGTGACAAAATTGATGCTTATTGCAGAGGCACAGCG CATCTGTCCCGATTTGGTTCTTGTCAATGGAGAAGACCTCGCCCCTTATC GGCAGATGTCGCAAAGAATCTTTGACCTCCTGCTTAACTACACTCCCCTA GTGGAGAAGCTAGGCTTCGATGAGAACTTTATGGATGTGACTGCACTTGT AGAACTGCGACAGGCTCACGTTGCTGAGGCCCTGTTGAGACCACCGGTGG GTCATACGTATCCGGCGGATGGTACTCCCTTGTCAAATTGCGATTGTGGC TGTGCCCAGCGGCTGGCCATCGGCACTCGGATCGCCCAGGAAATCAGGGA GGAGCTCAAGCTCCGGCTGGGAATTACCTGCTGCGCTGGAATCGCCTATA ACAAGCTACTGGCCAAGCTAGTCGGCAGTAGTCATGAGCCAAATCAGCAG ACCGTTCTTGTTTCCACCTATGCAGAGCAGTTCATGCGGGAACTGGGCGA CCTAAAGCGAGTCACTGGGATTGGGCAGAAGACGCAGTGCCTTCTCCTGG AGGCGGGTATGTCATCCGTCGAGCAGCTGCAGCAGTGCGACATGGACGTA ATGCGGAAGAAATTTGGATTTGAAACTGCCACCCGACTGCGAGATCTGGC CTTTGGCCGTGACACGAGCTTAGTCCGTCCCAGCGGAAAACCCAAGACCA TTGGAATGGAAGATGCCTGTAAGCCAATATCCGTGCGTACCGATGTGGAG GAAAGGTTTCGCATGCTGCTCAAGCGGCTGGTGGAGCAAGTTGCAGAGGA TGGACGCGTTCCCATTGCCATCAAGGTCGTGTTGCGCAAGTTCGACTCGC AAAAGAAGAGCAGCCACCGTGAGACCAAACAGGCCAACATTCTACCCTCC CTTTTTAAGACCTCCATGTGTCCAGGAGAAACTGGTGTGAGCAAGGTACA ACTGGCGGATGGCGCCCAGGATAAACTCCTCAAGATTGTGATGCGACTTT TTGAGCGAATTGTTGATATGAGCAAGCCCTTCAACATCACTCTACTAGGC CTCGCATTCTCCAAGTTCCAGGAGCGCAAGGTTGGCTCCTCATCAATTGC TAATTTCCTGATCAAAAAGGCGGATCTGGAGGTGCAGTCTATCACCTCAC TGACAAATACGAGTCTCACAAGTCCCACAGCGGAGAGTCCCACATCAGAC GAGTGCGCCTTCCGCTCCTCGCCAACAACATTCAAACCCAGCGATCAGTT CTATAGGAGAAGAGCCACTACTGCATCACCTGTGCCCATGCTACTTGATA ATGGTTCCGAATCAGCGGCCACCAATTCGGATTTCAGCGACTTCTCTGAG ACTGAGGTGGAACCCTCGCCGAAAAAGAGTCGCATTGGCCGATTACTTGT TTCTAAGCGCAGCCGCTTGGCGGCGGATGTGGGAGATTCCGCCGCCGAAG TAGCTTCGCCCAGCAAACTGCGTGTCTGTGATCTGCGCCTCAACTCGCGG GATAGCGAGAAAGACTTTCCCATGAGCACCACGCCTTCTACCTCTACGTC CGCGCCTGCGCCTCGCTTCCGCACCGTCCAGCCACCAAACACGTTGCTGC AACGGATCGACGGCAGTCTACGCTTTGTTACGACGCGCACTGCCAGTCGC TTGAGCTCAAATGCTAGTTCTACGGCATCCTCGCCGCTTCCTTCTCCCAT GGACGACTCCATAGCCATGAGCGCACCCAGCACAACAACCTTGCCATTTC CCTCACCCACCACGACAGCGGTGGTCACCAGCAGTAGTAGTACGGCCACG TGTGATGCCCTAACGAATATAGTTTGTCCAGCGGGTGTGGATGCCGAGGT GTTCAAAGAGCTACCCGTGGAGCTGCAGACGGAGTTGATCGCATCGTGGC GCAGCTCCCTGGTGGCGGCTGTTGAGCAAACGAATGGGACCGGTGCCGCT ACAAGCGCAGCTATCGCCAGTGGAGCCCCAGCAACTGCCACAACCGCCAG CGGACAAAAGAACACTTTGTATCGCTACTTTCTCCGGAATAAGTGATGCA GTGTATCCGAGCATCACATCGTTTTTAGTTATAATGGTAAAGAGAATAAA TTTGTTTAAATATATGATATATTTTTGTAGGTATACGGTTACAGAGTGCA TGCTTTAGGGTGCCGCATTGGACGAACATAAGCTAGGATAAATAACTAGT GGGTTTCTTGAACTGAATGAGTGATTTTGTTAAGTTTATAATACCGAAGA ATGTCATTAGATAACCGCATTTTCATTTAACAAGTTTTAATCTTCGCTAA TTTATAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DNApol-iota-RA | 3189 | DNApol-iota-RA | 45..2603 | 1..2559 | 12795 | 100 | Plus |
DNApol-iota.a | 2569 | DNApol-iota.a | 7..2569 | 1..2559 | 12730 | 99.8 | Plus |
DNApol-iota.b | 2569 | DNApol-iota.b | 68..2569 | 58..2559 | 12510 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4061298..4062813 | 1040..2555 | 7580 | 100 | Plus |
chr3R | 27901430 | chr3R | 4060261..4061235 | 67..1041 | 4860 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 4059593..4059660 | 1..68 | 340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4059593..4059659 | 1..67 | 100 | -> | Plus |
chr3R | 4060262..4061233 | 68..1039 | 99 | -> | Plus |
chr3R | 4061298..4062813 | 1040..2555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-iota-RA | 1..2214 | 83..2296 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-iota-RA | 1..2214 | 83..2296 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-iota-RB | 1..2214 | 83..2296 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-iota-RA | 1..2214 | 83..2296 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-iota-RB | 1..2214 | 83..2296 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-iota-RA | 21..2575 | 1..2555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-iota-RA | 21..2575 | 1..2555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-iota-RA | 68..2622 | 1..2555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-iota-RA | 21..2575 | 1..2555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-iota-RA | 68..2622 | 1..2555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8233580..8233646 | 1..67 | 100 | -> | Plus |
3R | 8234251..8235222 | 68..1039 | 100 | -> | Plus |
3R | 8235287..8236802 | 1040..2555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8233580..8233646 | 1..67 | 100 | -> | Plus |
3R | 8234251..8235222 | 68..1039 | 100 | -> | Plus |
3R | 8235287..8236802 | 1040..2555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8233580..8233646 | 1..67 | 100 | -> | Plus |
3R | 8234251..8235222 | 68..1039 | 100 | -> | Plus |
3R | 8235287..8236802 | 1040..2555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4059302..4059368 | 1..67 | 100 | -> | Plus |
arm_3R | 4059973..4060944 | 68..1039 | 100 | -> | Plus |
arm_3R | 4061009..4062524 | 1040..2555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7974411..7974477 | 1..67 | 100 | -> | Plus |
3R | 7975082..7976053 | 68..1039 | 100 | -> | Plus |
3R | 7976118..7977633 | 1040..2555 | 100 | Plus |
Translation from 0 to 2295
> LD29090.hyp LKVIFYCSSVHFVFKSSYLDTPALRTVMDFASVLGKSEAHQRTIIHLDMD YFYAQVEEIRDPTLRSKALGIQQKNIVVTCNYVARAKGVTKLMLIAEAQR ICPDLVLVNGEDLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV ELRQAHVAEALLRPPVGHTYPADGTPLSNCDCGCAQRLAIGTRIAQEIRE ELKLRLGITCCAGIAYNKLLAKLVGSSHEPNQQTVLVSTYAEQFMRELGD LKRVTGIGQKTQCLLLEAGMSSVEQLQQCDMDVMRKKFGFETATRLRDLA FGRDTSLVRPSGKPKTIGMEDACKPISVRTDVEERFRMLLKRLVEQVAED GRVPIAIKVVLRKFDSQKKSSHRETKQANILPSLFKTSMCPGETGVSKVQ LADGAQDKLLKIVMRLFERIVDMSKPFNITLLGLAFSKFQERKVGSSSIA NFLIKKADLEVQSITSLTNTSLTSPTAESPTSDECAFRSSPTTFKPSDQF YRRRATTASPVPMLLDNGSESAATNSDFSDFSETEVEPSPKKSRIGRLLV SKRSRLAADVGDSAAEVASPSKLRVCDLRLNSRDSEKDFPMSTTPSTSTS APAPRFRTVQPPNTLLQRIDGSLRFVTTRTASRLSSNASSTASSPLPSPM DDSIAMSAPSTTTLPFPSPTTTAVVTSSSSTATCDALTNIVCPAGVDAEV FKELPVELQTELIASWRSSLVAAVEQTNGTGAATSAAIASGAPATATTAS GQKNTLYRYFLRNK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DNApol-iota-PC | 737 | CG7602-PC | 1..737 | 28..764 | 3699 | 100 | Plus |
DNApol-iota-PA | 737 | CG7602-PA | 1..737 | 28..764 | 3699 | 100 | Plus |
DNApol-iota-PB | 737 | CG7602-PB | 1..737 | 28..764 | 3699 | 100 | Plus |
DNApol-eta-PA | 885 | CG7143-PA | 14..346 | 40..332 | 314 | 29.1 | Plus |
Translation from 82 to 2295
> LD29090.pep MDFASVLGKSEAHQRTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNIV VTCNYVARAKGVTKLMLIAEAQRICPDLVLVNGEDLAPYRQMSQRIFDLL LNYTPLVEKLGFDENFMDVTALVELRQAHVAEALLRPPVGHTYPADGTPL SNCDCGCAQRLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSS HEPNQQTVLVSTYAEQFMRELGDLKRVTGIGQKTQCLLLEAGMSSVEQLQ QCDMDVMRKKFGFETATRLRDLAFGRDTSLVRPSGKPKTIGMEDACKPIS VRTDVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKKSSHRETKQ ANILPSLFKTSMCPGETGVSKVQLADGAQDKLLKIVMRLFERIVDMSKPF NITLLGLAFSKFQERKVGSSSIANFLIKKADLEVQSITSLTNTSLTSPTA ESPTSDECAFRSSPTTFKPSDQFYRRRATTASPVPMLLDNGSESAATNSD FSDFSETEVEPSPKKSRIGRLLVSKRSRLAADVGDSAAEVASPSKLRVCD LRLNSRDSEKDFPMSTTPSTSTSAPAPRFRTVQPPNTLLQRIDGSLRFVT TRTASRLSSNASSTASSPLPSPMDDSIAMSAPSTTTLPFPSPTTTAVVTS SSSTATCDALTNIVCPAGVDAEVFKELPVELQTELIASWRSSLVAAVEQT NGTGAATSAAIASGAPATATTASGQKNTLYRYFLRNK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18848-PA | 732 | GF18848-PA | 1..732 | 1..737 | 3384 | 88.7 | Plus |
Dana\GF23499-PA | 876 | GF23499-PA | 14..346 | 13..305 | 332 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23702-PA | 737 | GG23702-PA | 1..737 | 1..737 | 3811 | 96.9 | Plus |
Dere\GG13193-PA | 890 | GG13193-PA | 14..346 | 13..305 | 328 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18329-PA | 758 | GH18329-PA | 1..758 | 1..737 | 2960 | 77.3 | Plus |
Dgri\GH17135-PA | 871 | GH17135-PA | 7..347 | 5..305 | 332 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DNApol-iota-PC | 737 | CG7602-PC | 1..737 | 1..737 | 3699 | 100 | Plus |
DNApol-iota-PA | 737 | CG7602-PA | 1..737 | 1..737 | 3699 | 100 | Plus |
DNApol-iota-PB | 737 | CG7602-PB | 1..737 | 1..737 | 3699 | 100 | Plus |
DNApol-eta-PA | 885 | CG7143-PA | 14..346 | 13..305 | 314 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23309-PA | 749 | GI23309-PA | 1..749 | 1..737 | 3023 | 79.8 | Plus |
Dmoj\GI11744-PA | 894 | GI11744-PA | 7..347 | 5..305 | 324 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24261-PA | 759 | GL24261-PA | 1..759 | 1..737 | 3214 | 83.3 | Plus |
Dper\GL25322-PA | 892 | GL25322-PA | 14..346 | 13..305 | 336 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20473-PA | 761 | GA20473-PA | 1..761 | 1..737 | 3245 | 83.5 | Plus |
Dpse\GA20133-PA | 894 | GA20133-PA | 14..346 | 13..305 | 336 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23708-PA | 735 | GM23708-PA | 1..735 | 1..737 | 3823 | 98.1 | Plus |
Dsec\GM22104-PA | 889 | GM22104-PA | 14..346 | 13..305 | 324 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18521-PA | 712 | GD18521-PA | 3..712 | 26..737 | 3663 | 97.6 | Plus |
Dsim\GD12080-PA | 889 | GD12080-PA | 14..346 | 13..305 | 320 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24165-PA | 749 | GJ24165-PA | 1..749 | 1..737 | 2989 | 80.1 | Plus |
Dvir\GJ11416-PA | 871 | GJ11416-PA | 7..347 | 5..305 | 320 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14382-PA | 735 | GK14382-PA | 1..735 | 1..737 | 3051 | 81.4 | Plus |
Dwil\GK12166-PA | 864 | GK12166-PA | 14..451 | 13..413 | 303 | 26.2 | Plus |
Dwil\GK17515-PA | 1022 | GK17515-PA | 325..574 | 21..309 | 195 | 23.5 | Plus |