Clone LD29140 Report

Search the DGRC for LD29140

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:291
Well:40
Vector:pOT2
Associated Gene/TranscriptVps26-RA
Protein status:LD29140.pep: gold
Sequenced Size:2563

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14804 2003-01-01 Sim4 clustering to Release 3
CG14804 2008-04-29 Release 5.5 accounting
CG14804 2008-08-15 Release 5.9 accounting
CG14804 2008-12-18 5.12 accounting

Clone Sequence Records

LD29140.complete Sequence

2563 bp (2563 high quality bases) assembled on 2005-06-20

GenBank Submission: BT023502

> LD29140.complete
CGATATGGCAACGCCGTAGTGTGAAAAATTGCAATTTTTTTCATTTCACA
CACACAGACGCGACAGATACGCCAGCATCGGAACGAAGGACGTAAAAAGG
CCGCAGAAAAACGCCTATCAAAGCTGAGGTTTATTGAAGGGGTTATCAGA
AAGATATCTCTAGGAAAAGCCGCCAACAGGAGTCACAGCGTCGACATTCC
ATCGGAGCAGCAAGAAGCAGAGGCGGGGGCAATAAGAAACGGAAGAAGAA
GAAGCCGATTCGACGTTTATCAATTATGAATTTCCTGGGATTCGGCCAGT
CAGCGGACATTGAGATAGTCTTTGATGGAGCTGAGCACAAGACGGCAGAG
GTTAAAGGGGAGGACGGCAAAGTGGAGAAGATGCTGCTATTCTACGACGG
GGAGACGGTATCCGGCAAGGTGAACGTGACCCTCAAGAAGCCGGGCAGCA
AGCTGGAGCACCAGGGCATTAAGATCGAATTCATTGGCCAGATCGAACTG
TACTACGACCGGGGTAACCACCACGAATTCAAGTGTCTAGCGAAGGCCCT
GGCCCGCCCGGGCGATCTCATCCAGAACAACAGCTATCCATTCGATTTCC
CCAAAGTGGAGAAGCAATTCGAGGTGTACGCCGGCTCGAACGTGCGGTTG
CGGTACTTCCTGCGCGCAACCATCGTCAGGCGGATCAGCGACATAACGAA
GGAGGTCGACATCGCCGTGCACACACTGTGCAGCTACCCGGAGATGAACA
ACCCCATCAAGATGGAGGTAGGCATCGAAGACTGCCTGCACATCGAATTC
GAGTATAACAAAAGCAAGTACCACCTGCGGGACACGATTATCGGCAAGAT
CTACTTCCTGTTGGTGCGCATTAAGATCAAGCACATGGAGATTGCGATCA
TCAAGAAGGAGAGCACGGGCACGGGCCCCACCATGTTTAACGAAAACGAA
ACGATTGCCAAGTACGAGATCATGGACGGAGCGCCCGTCAAAGGCGAGAG
CATACCCATCCGGGTCTTTCTTGCTGGCTACAATCTCACGCCGACCATGC
GGGACATTAACAAGAAGTTCTCAGTCAAGTATTTCCTCAACCTTGTGCTG
ATGGACACCGAGGACCGGCGCTACTTCAAACAACAGGAGATCACGCTGTG
GCGCAAGGCAGACAAACCGCGTTACCATGGCGCTCAGCAGCACCAGCAAC
AGCAGCACCAACACGTTCCCCTGCACGCTCCGCCGCACCTGGTCAGCGGT
CCTGCTGCGCCCACAGTGGCTCACTCGCTGATCAGCTCGAGCACGGACAG
CGGAGAGGTGGGAGGAGCACCGACAGCGCCGGGCACTGCAGGATCTGAGT
CCAAGATGGGTCTGTTTACCAGGGAGAGCCCCAACCAGGAGTTCAGCCAA
CAGCAAATGGATTCTCCGCCGCTGACGCCCACGCCGTCGACCGCATCCGT
TGCAGTTGCAGTCCCCACAGCGGCGTCATCTGTTTCAGAACCAGCTCCCG
AGCGGGGCATAGGCGATGGAGCCGCAGCGGCCACCACAAGCGCCTCGCCC
GTAGCTATGCTCTCCAGTTCGCCACCGCCATTGCTGCCAGTATCGCCGCT
CTCCCGATCGGAAACTGAAGCGTCGGAGCAAGTACAACCGGAGGATGAGG
ACCTCGATGCAATTACGCCCAATACGAAAAAGACCGGTGCAACGCCGTTG
GCCACCGATTGAGTGGGAAGCTGGAGAGGATTTCCATCTTCAGGGGGATA
AGTAGTAACAGCCAGAGCTAGGGCAACAACAGAAGGCGGAACTATTACGC
ATATATTCGTATTCGTATACAGCAGCAGGAAGGCAGTTCAGCAGCAGCAA
CAAATATGCATATATCTATTTTTTTAAAGTTAATTTAAAATTGTTACAAA
TGTTTTATTGAGGTTATGCGCATCATTAACCAAAAGCAGGCAAATCGCAA
ATGATAGTAACAAAAAAACAAAACGAAACTTAGGACAAATGAGAAGAGGC
AACCTCGTAGCTACAACCAATCTCTTGGCGTTTCCATTGGTATTATTGCT
ATAACAAGTCGAGAAGCTGTCGAGAGGCGCGCGACTCGGACACGAAAGCA
AACCCTAATCCCCTGCGCCCCAAAACTAGTTAAACTCCCTAGTATTCCGA
TGACCATTCCCTATCCTTGTGGCGTTTGGAAAATATGATTTTTCAATTTG
AAAAATGTTGAAATTGCTTTCTAAAAGTGAGACCCCTGAATTGAAATTTA
AGTGTGCATTAAACTAAACCAACTCCAATACAAATGAAGATGAAGCAGCA
AACAGCAGACAAAACATCCATTAAATAATAAAGTTTTAGTCTATAGCGTA
CTAACGAATTGATGCTGGGAGCGTTCTGATAATGGCGATTTGTCCGAGCG
ATCGGAAGTGGAAACGACGAAACGTGTTACATGCCTTGCATATGTACATA
ACAGTTCATATACATAACATACAAGAATTATTGATATATACACTTAGACA
CGCAATTTAACAAATAAAAGCGATATGAGCGCCAAAAATAAAAAAAAAAA
AAAAAAAAAAAAA

LD29140.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Vps26-RA 2660 Vps26-RA 32..2567 1..2536 12680 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1768202..1770320 418..2536 10580 100 Plus
chrX 22417052 chrX 1767706..1768127 1..422 2110 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1874359..1876477 418..2536 10595 100 Plus
X 23542271 X 1873863..1874284 1..422 2110 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1882457..1884575 418..2536 10595 100 Plus
X 23527363 X 1881961..1882382 1..422 2110 100 Plus
Blast to na_te.dros performed 2019-03-16 16:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6943 1185..1347 154 61 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3233..3307 1137..1213 127 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2364 1185..1239 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2380 1185..1213 118 89.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2395 1185..1213 118 89.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6861..6912 1174..1225 116 69.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3294..3345 1185..1236 116 69.2 Plus

LD29140.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:37:49 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1767706..1768124 1..419 100 -> Plus
chrX 1768204..1770322 420..2539 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:12 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
CG14804-RA 1..1437 276..1712 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:57:11 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
Vps26-RA 1..1437 276..1712 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:05 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
Vps26-RA 1..1437 276..1712 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:38:02 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
CG14804-RA 1..1437 276..1712 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:35:42 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
Vps26-RA 1..1437 276..1712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:36:22 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
CG14804-RA 1..2538 1..2539 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:57:11 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
Vps26-RA 1..2538 1..2539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:05 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
Vps26-RA 11..2543 1..2533 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:38:02 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
CG14804-RA 1..2538 1..2539 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:35:42 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
Vps26-RA 11..2543 1..2533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:49 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
X 1873863..1874281 1..419 100 -> Plus
X 1874361..1876479 420..2539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:49 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
X 1873863..1874281 1..419 100 -> Plus
X 1874361..1876479 420..2539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:49 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
X 1873863..1874281 1..419 100 -> Plus
X 1874361..1876479 420..2539 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:05 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1767896..1768314 1..419 100 -> Plus
arm_X 1768394..1770512 420..2539 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:16:35 Download gff for LD29140.complete
Subject Subject Range Query Range Percent Splice Strand
X 1881961..1882379 1..419 100 -> Plus
X 1882459..1884577 420..2539 99   Plus

LD29140.hyp Sequence

Translation from 275 to 1711

> LD29140.hyp
MNFLGFGQSADIEIVFDGAEHKTAEVKGEDGKVEKMLLFYDGETVSGKVN
VTLKKPGSKLEHQGIKIEFIGQIELYYDRGNHHEFKCLAKALARPGDLIQ
NNSYPFDFPKVEKQFEVYAGSNVRLRYFLRATIVRRISDITKEVDIAVHT
LCSYPEMNNPIKMEVGIEDCLHIEFEYNKSKYHLRDTIIGKIYFLLVRIK
IKHMEIAIIKKESTGTGPTMFNENETIAKYEIMDGAPVKGESIPIRVFLA
GYNLTPTMRDINKKFSVKYFLNLVLMDTEDRRYFKQQEITLWRKADKPRY
HGAQQHQQQQHQHVPLHAPPHLVSGPAAPTVAHSLISSSTDSGEVGGAPT
APGTAGSESKMGLFTRESPNQEFSQQQMDSPPLTPTPSTASVAVAVPTAA
SSVSEPAPERGIGDGAAAATTSASPVAMLSSSPPPLLPVSPLSRSETEAS
EQVQPEDEDLDAITPNTKKTGATPLATD*

LD29140.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Vps26-PA 478 CG14804-PA 1..478 1..478 2476 100 Plus

LD29140.pep Sequence

Translation from 275 to 1711

> LD29140.pep
MNFLGFGQSADIEIVFDGAEHKTAEVKGEDGKVEKMLLFYDGETVSGKVN
VTLKKPGSKLEHQGIKIEFIGQIELYYDRGNHHEFKCLAKALARPGDLIQ
NNSYPFDFPKVEKQFEVYAGSNVRLRYFLRATIVRRISDITKEVDIAVHT
LCSYPEMNNPIKMEVGIEDCLHIEFEYNKSKYHLRDTIIGKIYFLLVRIK
IKHMEIAIIKKESTGTGPTMFNENETIAKYEIMDGAPVKGESIPIRVFLA
GYNLTPTMRDINKKFSVKYFLNLVLMDTEDRRYFKQQEITLWRKADKPRY
HGAQQHQQQQHQHVPLHAPPHLVSGPAAPTVAHSLISSSTDSGEVGGAPT
APGTAGSESKMGLFTRESPNQEFSQQQMDSPPLTPTPSTASVAVAVPTAA
SSVSEPAPERGIGDGAAAATTSASPVAMLSSSPPPLLPVSPLSRSETEAS
EQVQPEDEDLDAITPNTKKTGATPLATD*

LD29140.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22229-PA 484 GF22229-PA 1..484 1..478 2016 86.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12886-PA 478 GG12886-PA 1..478 1..478 2473 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24707-PA 572 GH24707-PA 1..456 1..428 1845 81.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Vps26-PA 478 CG14804-PA 1..478 1..478 2476 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21805-PA 539 GI21805-PA 1..447 1..449 1911 84.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13339-PA 522 GL13339-PA 1..522 1..478 1881 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13260-PA 522 GA13260-PA 1..522 1..478 1892 79.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19174-PA 478 GM19174-PA 1..478 1..478 2536 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16574-PA 532 GD16574-PA 1..202 1..202 1105 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16978-PA 539 GJ16978-PA 1..452 1..432 1855 83.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16419-PA 487 GK16419-PA 1..459 1..465 1830 79.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16715-PA 478 GE16715-PA 1..478 1..478 2471 96.4 Plus