BDGP Sequence Production Resources |
Search the DGRC for LD29140
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 291 |
Well: | 40 |
Vector: | pOT2 |
Associated Gene/Transcript | Vps26-RA |
Protein status: | LD29140.pep: gold |
Sequenced Size: | 2563 |
Gene | Date | Evidence |
---|---|---|
CG14804 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14804 | 2008-04-29 | Release 5.5 accounting |
CG14804 | 2008-08-15 | Release 5.9 accounting |
CG14804 | 2008-12-18 | 5.12 accounting |
2563 bp (2563 high quality bases) assembled on 2005-06-20
GenBank Submission: BT023502
> LD29140.complete CGATATGGCAACGCCGTAGTGTGAAAAATTGCAATTTTTTTCATTTCACA CACACAGACGCGACAGATACGCCAGCATCGGAACGAAGGACGTAAAAAGG CCGCAGAAAAACGCCTATCAAAGCTGAGGTTTATTGAAGGGGTTATCAGA AAGATATCTCTAGGAAAAGCCGCCAACAGGAGTCACAGCGTCGACATTCC ATCGGAGCAGCAAGAAGCAGAGGCGGGGGCAATAAGAAACGGAAGAAGAA GAAGCCGATTCGACGTTTATCAATTATGAATTTCCTGGGATTCGGCCAGT CAGCGGACATTGAGATAGTCTTTGATGGAGCTGAGCACAAGACGGCAGAG GTTAAAGGGGAGGACGGCAAAGTGGAGAAGATGCTGCTATTCTACGACGG GGAGACGGTATCCGGCAAGGTGAACGTGACCCTCAAGAAGCCGGGCAGCA AGCTGGAGCACCAGGGCATTAAGATCGAATTCATTGGCCAGATCGAACTG TACTACGACCGGGGTAACCACCACGAATTCAAGTGTCTAGCGAAGGCCCT GGCCCGCCCGGGCGATCTCATCCAGAACAACAGCTATCCATTCGATTTCC CCAAAGTGGAGAAGCAATTCGAGGTGTACGCCGGCTCGAACGTGCGGTTG CGGTACTTCCTGCGCGCAACCATCGTCAGGCGGATCAGCGACATAACGAA GGAGGTCGACATCGCCGTGCACACACTGTGCAGCTACCCGGAGATGAACA ACCCCATCAAGATGGAGGTAGGCATCGAAGACTGCCTGCACATCGAATTC GAGTATAACAAAAGCAAGTACCACCTGCGGGACACGATTATCGGCAAGAT CTACTTCCTGTTGGTGCGCATTAAGATCAAGCACATGGAGATTGCGATCA TCAAGAAGGAGAGCACGGGCACGGGCCCCACCATGTTTAACGAAAACGAA ACGATTGCCAAGTACGAGATCATGGACGGAGCGCCCGTCAAAGGCGAGAG CATACCCATCCGGGTCTTTCTTGCTGGCTACAATCTCACGCCGACCATGC GGGACATTAACAAGAAGTTCTCAGTCAAGTATTTCCTCAACCTTGTGCTG ATGGACACCGAGGACCGGCGCTACTTCAAACAACAGGAGATCACGCTGTG GCGCAAGGCAGACAAACCGCGTTACCATGGCGCTCAGCAGCACCAGCAAC AGCAGCACCAACACGTTCCCCTGCACGCTCCGCCGCACCTGGTCAGCGGT CCTGCTGCGCCCACAGTGGCTCACTCGCTGATCAGCTCGAGCACGGACAG CGGAGAGGTGGGAGGAGCACCGACAGCGCCGGGCACTGCAGGATCTGAGT CCAAGATGGGTCTGTTTACCAGGGAGAGCCCCAACCAGGAGTTCAGCCAA CAGCAAATGGATTCTCCGCCGCTGACGCCCACGCCGTCGACCGCATCCGT TGCAGTTGCAGTCCCCACAGCGGCGTCATCTGTTTCAGAACCAGCTCCCG AGCGGGGCATAGGCGATGGAGCCGCAGCGGCCACCACAAGCGCCTCGCCC GTAGCTATGCTCTCCAGTTCGCCACCGCCATTGCTGCCAGTATCGCCGCT CTCCCGATCGGAAACTGAAGCGTCGGAGCAAGTACAACCGGAGGATGAGG ACCTCGATGCAATTACGCCCAATACGAAAAAGACCGGTGCAACGCCGTTG GCCACCGATTGAGTGGGAAGCTGGAGAGGATTTCCATCTTCAGGGGGATA AGTAGTAACAGCCAGAGCTAGGGCAACAACAGAAGGCGGAACTATTACGC ATATATTCGTATTCGTATACAGCAGCAGGAAGGCAGTTCAGCAGCAGCAA CAAATATGCATATATCTATTTTTTTAAAGTTAATTTAAAATTGTTACAAA TGTTTTATTGAGGTTATGCGCATCATTAACCAAAAGCAGGCAAATCGCAA ATGATAGTAACAAAAAAACAAAACGAAACTTAGGACAAATGAGAAGAGGC AACCTCGTAGCTACAACCAATCTCTTGGCGTTTCCATTGGTATTATTGCT ATAACAAGTCGAGAAGCTGTCGAGAGGCGCGCGACTCGGACACGAAAGCA AACCCTAATCCCCTGCGCCCCAAAACTAGTTAAACTCCCTAGTATTCCGA TGACCATTCCCTATCCTTGTGGCGTTTGGAAAATATGATTTTTCAATTTG AAAAATGTTGAAATTGCTTTCTAAAAGTGAGACCCCTGAATTGAAATTTA AGTGTGCATTAAACTAAACCAACTCCAATACAAATGAAGATGAAGCAGCA AACAGCAGACAAAACATCCATTAAATAATAAAGTTTTAGTCTATAGCGTA CTAACGAATTGATGCTGGGAGCGTTCTGATAATGGCGATTTGTCCGAGCG ATCGGAAGTGGAAACGACGAAACGTGTTACATGCCTTGCATATGTACATA ACAGTTCATATACATAACATACAAGAATTATTGATATATACACTTAGACA CGCAATTTAACAAATAAAAGCGATATGAGCGCCAAAAATAAAAAAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps26-RA | 2660 | Vps26-RA | 32..2567 | 1..2536 | 12680 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6943 | 1185..1347 | 154 | 61 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3233..3307 | 1137..1213 | 127 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2364 | 1185..1239 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2380 | 1185..1213 | 118 | 89.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2395 | 1185..1213 | 118 | 89.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6861..6912 | 1174..1225 | 116 | 69.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3294..3345 | 1185..1236 | 116 | 69.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 1767706..1768124 | 1..419 | 100 | -> | Plus |
chrX | 1768204..1770322 | 420..2539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14804-RA | 1..1437 | 276..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps26-RA | 1..1437 | 276..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps26-RA | 1..1437 | 276..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14804-RA | 1..1437 | 276..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps26-RA | 1..1437 | 276..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14804-RA | 1..2538 | 1..2539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps26-RA | 1..2538 | 1..2539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps26-RA | 11..2543 | 1..2533 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14804-RA | 1..2538 | 1..2539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps26-RA | 11..2543 | 1..2533 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1873863..1874281 | 1..419 | 100 | -> | Plus |
X | 1874361..1876479 | 420..2539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1873863..1874281 | 1..419 | 100 | -> | Plus |
X | 1874361..1876479 | 420..2539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1873863..1874281 | 1..419 | 100 | -> | Plus |
X | 1874361..1876479 | 420..2539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 1767896..1768314 | 1..419 | 100 | -> | Plus |
arm_X | 1768394..1770512 | 420..2539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1881961..1882379 | 1..419 | 100 | -> | Plus |
X | 1882459..1884577 | 420..2539 | 99 | Plus |
Translation from 275 to 1711
> LD29140.hyp MNFLGFGQSADIEIVFDGAEHKTAEVKGEDGKVEKMLLFYDGETVSGKVN VTLKKPGSKLEHQGIKIEFIGQIELYYDRGNHHEFKCLAKALARPGDLIQ NNSYPFDFPKVEKQFEVYAGSNVRLRYFLRATIVRRISDITKEVDIAVHT LCSYPEMNNPIKMEVGIEDCLHIEFEYNKSKYHLRDTIIGKIYFLLVRIK IKHMEIAIIKKESTGTGPTMFNENETIAKYEIMDGAPVKGESIPIRVFLA GYNLTPTMRDINKKFSVKYFLNLVLMDTEDRRYFKQQEITLWRKADKPRY HGAQQHQQQQHQHVPLHAPPHLVSGPAAPTVAHSLISSSTDSGEVGGAPT APGTAGSESKMGLFTRESPNQEFSQQQMDSPPLTPTPSTASVAVAVPTAA SSVSEPAPERGIGDGAAAATTSASPVAMLSSSPPPLLPVSPLSRSETEAS EQVQPEDEDLDAITPNTKKTGATPLATD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps26-PA | 478 | CG14804-PA | 1..478 | 1..478 | 2476 | 100 | Plus |
Translation from 275 to 1711
> LD29140.pep MNFLGFGQSADIEIVFDGAEHKTAEVKGEDGKVEKMLLFYDGETVSGKVN VTLKKPGSKLEHQGIKIEFIGQIELYYDRGNHHEFKCLAKALARPGDLIQ NNSYPFDFPKVEKQFEVYAGSNVRLRYFLRATIVRRISDITKEVDIAVHT LCSYPEMNNPIKMEVGIEDCLHIEFEYNKSKYHLRDTIIGKIYFLLVRIK IKHMEIAIIKKESTGTGPTMFNENETIAKYEIMDGAPVKGESIPIRVFLA GYNLTPTMRDINKKFSVKYFLNLVLMDTEDRRYFKQQEITLWRKADKPRY HGAQQHQQQQHQHVPLHAPPHLVSGPAAPTVAHSLISSSTDSGEVGGAPT APGTAGSESKMGLFTRESPNQEFSQQQMDSPPLTPTPSTASVAVAVPTAA SSVSEPAPERGIGDGAAAATTSASPVAMLSSSPPPLLPVSPLSRSETEAS EQVQPEDEDLDAITPNTKKTGATPLATD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22229-PA | 484 | GF22229-PA | 1..484 | 1..478 | 2016 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12886-PA | 478 | GG12886-PA | 1..478 | 1..478 | 2473 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24707-PA | 572 | GH24707-PA | 1..456 | 1..428 | 1845 | 81.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps26-PA | 478 | CG14804-PA | 1..478 | 1..478 | 2476 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21805-PA | 539 | GI21805-PA | 1..447 | 1..449 | 1911 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13339-PA | 522 | GL13339-PA | 1..522 | 1..478 | 1881 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13260-PA | 522 | GA13260-PA | 1..522 | 1..478 | 1892 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19174-PA | 478 | GM19174-PA | 1..478 | 1..478 | 2536 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16574-PA | 532 | GD16574-PA | 1..202 | 1..202 | 1105 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16978-PA | 539 | GJ16978-PA | 1..452 | 1..432 | 1855 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16419-PA | 487 | GK16419-PA | 1..459 | 1..465 | 1830 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16715-PA | 478 | GE16715-PA | 1..478 | 1..478 | 2471 | 96.4 | Plus |