Clone LD29155 Report

Search the DGRC for LD29155

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:291
Well:55
Vector:pOT2
Associated Gene/TranscriptCG3631-RC
Protein status:LD29155.pep: gold
Preliminary Size:2901
Sequenced Size:2753

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3631 2001-01-01 Release 2 assignment
CG3631 2001-09-19 Blastp of sequenced clone
CG3631 2008-04-29 Release 5.5 accounting
CG3631 2008-08-15 Release 5.9 accounting
CG3631 2008-12-18 5.12 accounting

Clone Sequence Records

LD29155.complete Sequence

2753 bp (2753 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060387

> LD29155.complete
CACGTTTTTCCCATTTTCACCGACATAAACAAAAGCTATTTATACACGAT
CTGCCAAATCGGAGAGGCAACCTAAGTGCGACAACAGAATTCTTTGTCTT
CCGAATCCGAATGCGTGCAGTGCGGTCTTCGTTCATGTGGATGTTGGCCA
AAAATAAGACGGCGACCAATTAAAGCAGCAGCAGAAGAGGAAGACCACGA
TTTATTGGGCAATTGTGGCCAAGAATCCCAATGGGGCAACTGCACGCTTG
TAAACAAACGGTTAAGTCAGATAGAAAGCTATTTGTGCCAGGAACACTTC
ACACATATCTCGTATCTTGCACATCTTCTAGATGATTGCTTGCAATCGGA
TGCCATCTGAATGCATAGAAGGATCAATGGGATAACCACTTAGGAGAACG
ACATTATCAAACCATCATGATTTATGCCATCATTTAGAAGTTATCAACTG
ATCGGCGCGGTTATTATCTAAATTGAATGAATCACACGGAAATACTAAGA
TACACGAATTGCCAAGAATTCGAGTGGGGTCAACAGTACATAGAGGCGGC
CACAATTAATTTGCACAACAATGGACTGATGCGAACAGTTGTTAGCCGAT
GTCTGCCAAAAAAAAAAATAGGTACAGCAAAAGGAAGGGCAGCCGCAGCA
AGAACAACAATCGCCAGAGCAGCAGCAACAATTGCAAGAAGTGCAGCAAG
TATTGCAAGTGCAACACCAACAACTGCAACAATTGCCAGAGGAACAGCAG
CGACAGCAGCAACAACAGCAGCAGCATGCCACTGTGCCAGCCCGGCCATA
TCAACATTTCGGCTAGAATTGTGCAAATTGCCAGTGCGGCTATCGCTGCG
TATACGTAATATTAAAAATAGGCTAACGCCCGCCCAGGCTGCAGGATGAA
CAAGCGCAGCGTCATCATCGCGGGAATCGTGGCCAGCCTGTTGGGCTTGG
CGCTCGGTGCCAACTTCTACTTTATGTACTACCTCAGCGCCGAGGAGGGT
CATCTGGCCAGCGTCCGGGCGCTGGAGAACATGATACGGCACAAGATGCG
CCACCTAAAACCCAACTACCTCAATCGCAATCCCCGCTTCTTCATGTTCC
GCAACAAGCTGCTTAAGAACTACAAGGCGGCGCCGTACGAGAACGCCAGT
GTCCTCTGGGACATTGCGAACTGGTGGCCGCACGAAAACGAGGTCTATCC
CTTATACGACTCATCGATGGGACAGCTTTTAGAAACACTGCGCCGCGAAC
CTATCACCCGGGTGAGCAACCTGGGTCGGGGCACGCAACTGAAGCTCCTC
GTCCGCCTTTCCCACCAGCAGAAGGTGATCTTTAAGCCGCAATGGTATCC
GCGGGAAGAGGTCATCGATGGCATGATATACAGTGGCAAGGATCGCCACA
CGGCGGAAGTATATGCCTTCTATCTGGGCGCCGTGCTCGACTTTCGATGG
ACGCCCATAGTGGTGGGTCGAGTGGTGAACCTGAAGAAGGAGATATATGC
CAAAGGCGATCCGGAACTCCAGCAAACCATAAACATCGAAACGGACGAGG
ATGGCAGGGAGAAGTACTGCCTGTTCGGGAAGTGTCACTACTGCAACGAG
GAGGAGACTGTTTGTGGCGATGAGCGGCACAACATTGAAGGTGTGCTCAT
ATATATTGTTCCGGGTACGTTGGCTAAGCGGCGATCACCGTGGCAACGCA
CCTACAAGGATGACAAGCGGGCGCCCTGGGAGGACGATATGACCTATTGC
AAATCGTTGAAAAATAAAATGGAGACCATCCGCCTGCTGGACCTTATAGA
TGCGTCTATTTTCGACTACCTAATCCAAAATGGAGATCGGCATCACTACG
AGACGCGGGAAGAGCGCGTGGTGCTTATAGACAATGGAAAAGCCTTCGGA
AACCCGAACAAGGATCACTTGGACATATTGGCGCCACTCTACCAATGCTG
CCTTCTGCGAAAGTCCACGTGGGATCGCCTGCAAGTCTTTTCCGGCGGCG
TACTCACGGAAATCATCGATCGACTATCCAAGCAGGATGCTCTCTATCCC
CTGATTACGGATAAGCATAAAAAAGGAGTGGAGCGACGACTTCTGGTGGT
CTATGCTGTTGTGGAGCACTGCATGGACATCGAGGGCGACAAAATGTTCA
AAACTCTGTAGTTTCAGCTCAAGATTGGGGCTAATGGCCAGCACTAGAGC
TTTAGGAACTCACTTTCCACATCCTACTTAAGCTAAAGTTAGATAGAGAA
ATTATCGTATTATTTTAGTCCATGTTTTACTTCTGTATTTCTTCCAAATA
TTTAAATGCCCGAAACAGGTTTTTTCCTATTTTAAATTAAGTTCTTTTGT
CCTTTCTTGTATTGGTTTGAATGCTAGAAAAGTTTTCGAAAAATTGAGAT
GCCATCCAATTAGGAATTAAATCATACAAAATTCGTTGTGACGAAATAAG
TTTGAAATTTAAACCTATTACCATGACATTTCCCACGTCCCAATTATTAT
TTGGTTTTCCCATATTTTTTCAATGACCATCTCTTAAAACTGTTCTTAAA
TATTGAACTACAAACCGATCCATAACAACATATCCGATAGTCTAGTTTAA
TGAATAGTTACGGTTGTTATTTAATAGGTAATATTTTAGAAAATTGCAAA
GCTCAGAAAAAATAGTTTTGTAACTTGAAAAGAATTTATAAACAATCAAA
AATAAACACTTGTTTATTTCTTCATCAGTTTCAAAAAAAAAAAAAAAAAA
AAA

LD29155.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3631-RC 2777 CG3631-RC 46..2777 1..2732 13660 100 Plus
CG3631.a 2721 CG3631.a 326..2721 332..2727 11980 100 Plus
CG3631.c 2860 CG3631.c 676..2860 543..2727 10925 100 Plus
CG3631.a 2721 CG3631.a 61..325 1..265 1325 100 Plus
CG3631.c 2860 CG3631.c 166..425 1..260 1300 100 Plus
CG3631.c 2860 CG3631.c 425..637 331..543 1065 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10706498..10707276 1954..2732 3895 100 Plus
chr3R 27901430 chr3R 10704807..10705439 542..1174 3165 100 Plus
chr3R 27901430 chr3R 10705602..10706180 1174..1752 2880 99.8 Plus
chr3R 27901430 chr3R 10704146..10704688 1..543 2700 99.8 Plus
chr3R 27901430 chr3R 10706241..10706441 1753..1953 1005 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14881853..14882632 1954..2733 3900 100 Plus
3R 32079331 3R 14880162..14880794 542..1174 3165 100 Plus
3R 32079331 3R 14880957..14881535 1174..1752 2895 100 Plus
3R 32079331 3R 14879501..14880043 1..543 2715 100 Plus
3R 32079331 3R 14881596..14881796 1753..1953 1005 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14622684..14623463 1954..2733 3900 100 Plus
3R 31820162 3R 14620993..14621625 542..1174 3165 100 Plus
3R 31820162 3R 14621788..14622366 1174..1752 2895 100 Plus
3R 31820162 3R 14620332..14620874 1..543 2715 100 Plus
3R 31820162 3R 14622427..14622627 1753..1953 1005 100 Plus
Blast to na_te.dros performed 2019-03-16 10:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
transib2 2844 transib2 TRANSIB2 2844bp 2443..2495 2333..2283 116 76.4 Minus

LD29155.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:45:09 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10704146..10704688 1..543 99 -> Plus
chr3R 10704809..10705439 544..1174 100 -> Plus
chr3R 10705603..10706180 1175..1752 99 -> Plus
chr3R 10706241..10706441 1753..1953 100 -> Plus
chr3R 10706498..10707276 1954..2732 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:13 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
CG3631-RD 1..1266 896..2161 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:07 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
CG3631-RD 1..1266 896..2161 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:22:20 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
CG3631-RC 1..1266 896..2161 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:36 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
CG3631-RD 1..1266 896..2161 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:57 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
CG3631-RC 1..1266 896..2161 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:17 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
CG3631-RC 31..2757 1..2727 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:06 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
CG3631-RC 31..2757 1..2727 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:22:20 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
CG3631-RC 31..2757 1..2727 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:36 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
CG3631-RC 31..2757 1..2727 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:57 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
CG3631-RC 45..2776 1..2732 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:45:09 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14879501..14880043 1..543 100 -> Plus
3R 14880164..14880794 544..1174 100 -> Plus
3R 14880958..14881535 1175..1752 100 -> Plus
3R 14881596..14881796 1753..1953 100 -> Plus
3R 14881853..14882631 1954..2732 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:45:09 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14879501..14880043 1..543 100 -> Plus
3R 14880164..14880794 544..1174 100 -> Plus
3R 14880958..14881535 1175..1752 100 -> Plus
3R 14881596..14881796 1753..1953 100 -> Plus
3R 14881853..14882631 1954..2732 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:45:09 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14879501..14880043 1..543 100 -> Plus
3R 14880164..14880794 544..1174 100 -> Plus
3R 14880958..14881535 1175..1752 100 -> Plus
3R 14881596..14881796 1753..1953 100 -> Plus
3R 14881853..14882631 1954..2732 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:22:20 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10705223..10705765 1..543 100 -> Plus
arm_3R 10705886..10706516 544..1174 100 -> Plus
arm_3R 10706680..10707257 1175..1752 100 -> Plus
arm_3R 10707318..10707518 1753..1953 100 -> Plus
arm_3R 10707575..10708353 1954..2732 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:17 Download gff for LD29155.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14620332..14620874 1..543 100 -> Plus
3R 14620995..14621625 544..1174 100 -> Plus
3R 14621789..14622366 1175..1752 100 -> Plus
3R 14622427..14622627 1753..1953 100 -> Plus
3R 14622684..14623462 1954..2732 100   Plus

LD29155.hyp Sequence

Translation from 895 to 2160

> LD29155.hyp
MNKRSVIIAGIVASLLGLALGANFYFMYYLSAEEGHLASVRALENMIRHK
MRHLKPNYLNRNPRFFMFRNKLLKNYKAAPYENASVLWDIANWWPHENEV
YPLYDSSMGQLLETLRREPITRVSNLGRGTQLKLLVRLSHQQKVIFKPQW
YPREEVIDGMIYSGKDRHTAEVYAFYLGAVLDFRWTPIVVGRVVNLKKEI
YAKGDPELQQTINIETDEDGREKYCLFGKCHYCNEEETVCGDERHNIEGV
LIYIVPGTLAKRRSPWQRTYKDDKRAPWEDDMTYCKSLKNKMETIRLLDL
IDASIFDYLIQNGDRHHYETREERVVLIDNGKAFGNPNKDHLDILAPLYQ
CCLLRKSTWDRLQVFSGGVLTEIIDRLSKQDALYPLITDKHKKGVERRLL
VVYAVVEHCMDIEGDKMFKTL*

LD29155.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3631-PE 421 CG3631-PE 1..421 1..421 2248 100 Plus
CG3631-PD 421 CG3631-PD 1..421 1..421 2248 100 Plus
CG3631-PC 421 CG3631-PC 1..421 1..421 2248 100 Plus
CG31145-PF 528 CG31145-PF 186..523 97..416 463 32.4 Plus
CG31145-PB 528 CG31145-PB 186..523 97..416 463 32.4 Plus

LD29155.pep Sequence

Translation from 895 to 2160

> LD29155.pep
MNKRSVIIAGIVASLLGLALGANFYFMYYLSAEEGHLASVRALENMIRHK
MRHLKPNYLNRNPRFFMFRNKLLKNYKAAPYENASVLWDIANWWPHENEV
YPLYDSSMGQLLETLRREPITRVSNLGRGTQLKLLVRLSHQQKVIFKPQW
YPREEVIDGMIYSGKDRHTAEVYAFYLGAVLDFRWTPIVVGRVVNLKKEI
YAKGDPELQQTINIETDEDGREKYCLFGKCHYCNEEETVCGDERHNIEGV
LIYIVPGTLAKRRSPWQRTYKDDKRAPWEDDMTYCKSLKNKMETIRLLDL
IDASIFDYLIQNGDRHHYETREERVVLIDNGKAFGNPNKDHLDILAPLYQ
CCLLRKSTWDRLQVFSGGVLTEIIDRLSKQDALYPLITDKHKKGVERRLL
VVYAVVEHCMDIEGDKMFKTL*

LD29155.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16895-PA 421 GF16895-PA 1..421 1..421 2120 91.9 Plus
Dana\GF18751-PA 1027 GF18751-PA 684..1007 99..410 463 33.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16879-PA 421 GG16879-PA 1..421 1..421 2211 96.7 Plus
Dere\GG12419-PA 970 GG12419-PA 630..965 99..416 468 32.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18335-PA 421 GH18335-PA 1..421 1..421 2017 86.5 Plus
Dgri\GH19066-PA 1063 GH19066-PA 723..1046 99..410 475 34.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3631-PE 421 CG3631-PE 1..421 1..421 2248 100 Plus
CG3631-PD 421 CG3631-PD 1..421 1..421 2248 100 Plus
CG3631-PC 421 CG3631-PC 1..421 1..421 2248 100 Plus
CG31145-PF 528 CG31145-PF 186..523 97..416 463 32.4 Plus
CG31145-PB 528 CG31145-PB 186..523 97..416 463 32.4 Plus
CG31145-PA 528 CG31145-PA 186..523 97..416 463 32.4 Plus
CG31145-PC 980 CG31145-PC 638..975 97..416 463 32.4 Plus
CG31145-PD 915 CG31145-PD 638..913 97..362 420 35.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23314-PA 421 GI23314-PA 1..421 1..421 2015 86.9 Plus
Dmoj\GI10702-PA 1028 GI10702-PA 688..1011 99..410 475 33.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23850-PA 621 GL23850-PA 201..621 1..421 2104 90.5 Plus
Dper\GL13838-PA 1072 GL13838-PA 724..1055 99..410 451 32.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17572-PA 421 GA17572-PA 1..421 1..421 2097 90.5 Plus
Dpse\GA27699-PA 176 GA27699-PA 1..176 178..353 883 90.9 Plus
Dpse\GA26815-PB 542 GA26815-PB 200..525 97..410 473 32.9 Plus
Dpse\GA26815-PC 1081 GA26815-PC 741..1064 99..410 469 33.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24188-PA 421 GM24188-PA 1..421 1..421 2249 98.6 Plus
Dsec\GM23552-PA 994 GM23552-PA 654..989 99..416 465 32.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18980-PA 421 GD18980-PA 1..421 1..421 2253 99 Plus
Dsim\GD18367-PA 1076 GD18367-PA 669..895 99..320 328 33.6 Plus
Dsim\GD18367-PA 1076 GD18367-PA 975..1071 328..416 160 34 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24170-PA 421 GJ24170-PA 1..421 1..421 2009 86.2 Plus
Dvir\GJ23118-PA 1049 GJ23118-PA 709..1032 99..410 477 33.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13461-PA 421 GK13461-PA 1..421 1..421 2058 88.8 Plus
Dwil\GK13411-PA 1042 GK13411-PA 702..1025 99..410 477 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24260-PA 421 GE24260-PA 1..421 1..421 2236 98.1 Plus
Dyak\GE23938-PA 1033 GE23938-PA 693..1028 99..416 467 32.6 Plus