Clone LD29159 Report

Search the DGRC for LD29159

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:291
Well:59
Vector:pOT2
Associated Gene/TranscriptCG14613-RA
Protein status:LD29159.pep: gold
Preliminary Size:1747
Sequenced Size:1514

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14613 2001-01-01 Release 2 assignment
CG14613 2001-09-19 Blastp of sequenced clone
CG14613 2003-01-01 Sim4 clustering to Release 3
CG14613 2008-04-29 Release 5.5 accounting
CG14613 2008-08-15 Release 5.9 accounting
CG14613 2008-12-18 5.12 accounting

Clone Sequence Records

LD29159.complete Sequence

1514 bp (1514 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060388

> LD29159.complete
TGAAATCAGAAGATATTTAATAAACTGAATTGAGCCGGCTCTGCGTGGGA
ACGTGCGTGTGGAATAGTCCCCAGGAGAATCGGGAAGTGGTAAATCTTGA
GCCGCTGCTGCCAATAGAAGAGCACCCTCTGCGAGGACCAGCCCGGCACG
TTGCATATTGGTTAATTCCTGTAGAGTATTGGCCAATACAGGTTCAATTA
TGGCAACAGTGGTCTTTCTGTCGCGCCAGCGATTGCTTGCCTGCTCCTTG
CGGCTGTTCGGTGGCGCCCACTCAAGGTGCCTGTCGACGATGTCCGAGAC
TAGTCCAACAAGTCTGGCTAGTGATTCCTGGCCTCTCGCGAATCGCCGTA
ACCTGCTCCTGCCCACCGTCAACATCCGCTTCAACCACAAGTCGGCGAAC
CCGGCGGCGGCTGCACCAGCGCCCGCCATTAACAACTCGTCAGCCGGCGG
CAAGGATTTGAAGGCCACCAACAGCACCACCTCCAGCGAACTCTTTGGCG
AGGCGGCAAACATGGGTTTGTTCGCCAAGTTCAAGCACATGTACAAACAG
TACTGGTACGTGCTCATCCCGGTGCACGTGCTCACGTCAGTGGGCTGGTT
TGGAGGCTTCTACTACCTGTCAAAGAGTGGCGTCGATGTGCCCGCTTTGC
TGCAGTACATCCACTTGAGCGAGAACATCATTGAGAAGGTGCAGGGCTCG
GATATGGGGCACTACGCCATCGCCTATCTGTGCTATAAAGTGGCCACGCC
CCTGCGCTACGCCCTTACTTTGGGGTGTACAACCGTATCCATTAAGTACC
TGGTGCAACACGGCTACATTAAGCCCATGCCCACAAAAAGCGAGCTAATA
AAGATGTACGAGGACAAGAAGGCCACCCGGGCAAGCGCTAAGGCGGACAA
GGCAGAGAAGGACGAGAGAGAATGATCCACGGCCACGGGCAAACACATTC
CGACTTCAGTGGTGTCGTTGCCTTTGCCACAGTCACTAGATCCTAAACCG
CCGCCGCCGCTGCTGCCACTGTCAATGCCCCAAGGGATCGGCGACCAGCA
GCGACCGGACGCCGGCGAGCGGCGAGCAGTTGACCTGTTGTCTTTTTTGT
TAAACTGCCGCCGTTCTTGCTGGCACTGGTGCTCAAACGAACATAACTCT
TGTCCGGAATCACAGTCGATCGCAGAAGCCGCAGCCACCGCACTGAGTTG
CCGATGCACACACGCCCACTAACCACAGTTAAATAGCCGTAATCCCTTCA
ATCCCATCCCATATATTCAGATACACACTCAATATGTACTTTGCCTATAG
TTTCTGCTGCAGTTACGAAACGGCGGGACGTCCCCAATGGGAAACCAAAT
CTTATTTCACAAAGAAACCCAAAACAGAGCCGCTGAACGTGGAGTTCAGT
AGTCGTTATTTATAGATATATTTTGTAAATGTGAGAATGTTGTCGCAAAC
AAAAACCTAACTTTTAAATTAAAGTATAAATAAAAAGAAGCAGAAAAAAA
AAAAAAAAAAAAAA

LD29159.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14613-RA 1777 CG14613-RA 66..1559 1..1494 7470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21866225..21866945 1493..773 3605 100 Minus
chrX 22417052 chrX 21867315..21867941 627..1 3135 100 Minus
chrX 22417052 chrX 21867107..21867255 774..626 745 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22470258..22470979 1494..773 3610 100 Minus
X 23542271 X 22471349..22471975 627..1 3135 100 Minus
X 23542271 X 22471141..22471289 774..626 745 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22455350..22456071 1494..773 3610 100 Minus
X 23527363 X 22456441..22457067 627..1 3135 100 Minus
X 23527363 X 22456233..22456381 774..626 745 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:09:48 has no hits.

LD29159.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:10:34 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21866225..21866944 774..1493 100 <- Minus
chrX 21867108..21867253 628..773 100 <- Minus
chrX 21867315..21867941 1..627 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:14 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 1..726 200..925 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:08 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 1..726 200..925 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:11 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 1..726 200..925 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:37 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 1..726 200..925 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:29:30 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 1..726 200..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:18 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 1..1493 1..1493 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:08 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 39..1531 1..1493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:11 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 47..1539 1..1493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:37 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 1..1493 1..1493 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:29:30 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 47..1539 1..1493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:34 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
X 22470259..22470978 774..1493 100 <- Minus
X 22471142..22471287 628..773 100 <- Minus
X 22471349..22471975 1..627 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:34 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
X 22470259..22470978 774..1493 100 <- Minus
X 22471142..22471287 628..773 100 <- Minus
X 22471349..22471975 1..627 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:34 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
X 22470259..22470978 774..1493 100 <- Minus
X 22471142..22471287 628..773 100 <- Minus
X 22471349..22471975 1..627 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:11 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21872095..21872814 774..1493 100 <- Minus
arm_X 21872978..21873123 628..773 100 <- Minus
arm_X 21873185..21873811 1..627 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:19 Download gff for LD29159.complete
Subject Subject Range Query Range Percent Splice Strand
X 22455351..22456070 774..1493 100 <- Minus
X 22456234..22456379 628..773 100 <- Minus
X 22456441..22457067 1..627 100   Minus

LD29159.pep Sequence

Translation from 199 to 924

> LD29159.pep
MATVVFLSRQRLLACSLRLFGGAHSRCLSTMSETSPTSLASDSWPLANRR
NLLLPTVNIRFNHKSANPAAAAPAPAINNSSAGGKDLKATNSTTSSELFG
EAANMGLFAKFKHMYKQYWYVLIPVHVLTSVGWFGGFYYLSKSGVDVPAL
LQYIHLSENIIEKVQGSDMGHYAIAYLCYKVATPLRYALTLGCTTVSIKY
LVQHGYIKPMPTKSELIKMYEDKKATRASAKADKAEKDERE*

LD29159.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21272-PA 238 GF21272-PA 1..235 1..241 875 72.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17514-PA 241 GG17514-PA 1..241 1..241 1108 88.4 Plus
Dere\GG24922-PA 135 GG24922-PA 34..135 110..212 147 31.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17805-PA 180 GH17805-PA 8..175 75..240 683 76.3 Plus
Dgri\GH13417-PA 333 GH13417-PA 224..328 104..209 145 32.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14613-PB 241 CG14613-PB 1..241 1..241 1248 100 Plus
CG14613-PA 241 CG14613-PA 1..241 1..241 1248 100 Plus
CG15403-PA 200 CG15403-PA 78..200 91..212 161 31.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15148-PA 281 GI15148-PA 135..262 97..224 642 89.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13428-PA 245 GL13428-PA 65..242 53..238 724 75.3 Plus
Dper\GL25441-PA 245 GL25441-PA 73..243 61..239 703 74.9 Plus
Dper\GL21614-PA 245 GL21614-PA 73..242 61..238 659 74.7 Plus
Dper\GL21148-PA 356 GL21148-PA 253..350 110..208 150 34 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22887-PA 245 GA22887-PA 73..242 61..238 719 77 Plus
Dpse\GA28259-PA 245 GA28259-PA 73..243 61..239 703 74.3 Plus
Dpse\GA28618-PA 244 GA28618-PA 29..242 23..238 658 64.9 Plus
Dpse\GA29089-PA 356 GA29089-PA 253..350 110..208 155 34 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11723-PA 240 GM11723-PA 1..238 1..239 1154 95 Plus
Dsec\GM18396-PA 135 GM18396-PA 13..135 91..212 158 32 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15486-PA 240 GD15486-PA 1..238 1..239 1156 95.4 Plus
Dsim\GD23209-PA 134 GD23209-PA 12..134 91..212 158 32 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19007-PA 263 GJ19007-PA 120..263 96..239 699 87.5 Plus
Dvir\GJ18221-PA 317 GJ18221-PA 214..314 110..211 152 32.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16185-PA 258 GK16185-PA 1..254 1..241 721 61.4 Plus
Dwil\GK15336-PA 346 GK15336-PA 194..341 58..209 161 30.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15270-PA 241 GE15270-PA 1..239 1..239 1119 91.6 Plus
Dyak\GE18212-PA 198 GE18212-PA 97..198 110..212 157 33.7 Plus

LD29159.hyp Sequence

Translation from 199 to 924

> LD29159.hyp
MATVVFLSRQRLLACSLRLFGGAHSRCLSTMSETSPTSLASDSWPLANRR
NLLLPTVNIRFNHKSANPAAAAPAPAINNSSAGGKDLKATNSTTSSELFG
EAANMGLFAKFKHMYKQYWYVLIPVHVLTSVGWFGGFYYLSKSGVDVPAL
LQYIHLSENIIEKVQGSDMGHYAIAYLCYKVATPLRYALTLGCTTVSIKY
LVQHGYIKPMPTKSELIKMYEDKKATRASAKADKAEKDERE*

LD29159.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14613-PB 241 CG14613-PB 1..241 1..241 1248 100 Plus
CG14613-PA 241 CG14613-PA 1..241 1..241 1248 100 Plus
CG15403-PA 200 CG15403-PA 78..200 91..212 161 31.2 Plus