Clone LD29172 Report

Search the DGRC for LD29172

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:291
Well:72
Vector:pOT2
Associated Gene/TranscriptCG11905-RA
Protein status:LD29172.pep: gold
Preliminary Size:2421
Sequenced Size:2191

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11905 2001-09-19 Blastp of sequenced clone
CG11905 2008-04-29 Release 5.5 accounting
CG11905 2008-08-15 Release 5.9 accounting
CG11905 2008-12-18 5.12 accounting

Clone Sequence Records

LD29172.complete Sequence

2191 bp (2191 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058597

> LD29172.complete
TCGCCTGGCTCGCTGGCTCTTGGTTCTTGGTAGGAGTTCCATTTCCAGAC
CCTATTTATTGTGCGTGACAAAAAAAAAGAAAGAAAAACAACGGAACCTG
AAACAATCGTAAATTGAAAGCTCAGCAGGATTGGTTTTATAGTGCTTTTA
GTTTCAAGGATATATTGTCAAGGCGAGGATTGGTCAACGCCACGAACACC
AAGCATTTATTGAAAAATCTGAAACTATTCACCAGAACCTCGCGTTAAAA
TGCGCTTTCTTGTTCTCTCAACACTGCTTCTGGCCTCTTTGGCACTTGGC
CAGGCTCAACAGCACGGTGGACTGGCCGTCGAAATTCAGAAGCAGCGGCT
GGTCAAATTTCCCGAGGACTTTGAGCCCAATGCGGCCACTCCGTCCTCGG
AAAAGGCGGACGAGGCCAAGCGCATCCTCGAGCAGATAGCCAAGGTTAAC
GAGGCCTTTGGCTACGTGAAGAAGCAGCCGGAGCAGCCCAAGCTGCCACC
GATCCTTGATTCCAGTCAATACCTGTTCCCCAAGCCCGCCCATCAGCCAT
TTCACGCCCATCAGCACCACTTCTCGGGAAGTAATGGTCAGACCTTGTTA
GAACCCTCAATTAGGGCGGTGAAACTCACAAGAAATGTGGCGGGCAGTTA
CAATGTGCCTCCCAGGTTGCGCCAGGCAATTGAGAGCACCTCCAAGGAGG
AGAAGAAAGCGCAACTCTACTTCCGACCCAAACAGGTGGAGGTACCGAAG
CCGAGTTCCGAACAAGAAGCACAGCAGCTGCCCGCCCACTTTGTGGTGCC
CGTGCACCTGTACAAACTCAATAAGGAGGAGTATCTCAAGGAGCACGCCT
CGCAGGAATACAAGATAAAGGGATACAAAATCATTGGCGATGTGGACAGC
TTCTATGGCAAGGCGAAGGCTGGAAGAAAACAGGGCAAGACGACGCCCAA
GTATCACCTGTTCTTCCTGCCCCGAGAACTGGCTCTCAATGAAGATGGCA
CCCCAAAAAGGGGTAATTCCACCACCATTGGTACGACCACCACAAAGGCT
CCAGTGCCTGTGAACTTCAAGGAATATCGTTTGGACTCCCGCGAGAAGCC
CGTGCATAAGCCACAGAAGATTCAGCCCACTTCGTCACCGGAATTAAATT
CTTTGAACAGAAAGAAGGTTGGTTCCACAGCGAAACCCGTTCGCTTGAGT
GGAAAGGATGCTGAACAGCAAATCTACCAGGGATCCACATCCCTTAATAT
CAAGGCTACATCTGCGCCTGTCCTGTTGAGTTCTACTTTACCACCATCTG
GTGGCTTGCTGCCCAATCGGAATCGCTTAAGTCCATTCCGCATGCCCGGA
ATGAATATAGCTGAGATGCAGAATCAGACCTCGACTGCCATCAAGAATGC
CTTTCAAAACATTTTCAAGCTCCCCTTCCGACCTCCAATGGCGGCCACAG
CTGGAGAAGGTCCTGTGGTTGTTGGCAATGTTCCTGTGAAGAATCACTCA
ATCGATTCGATGGATTATAAATGGGAGGATGAAAACGAGGGCGCCGGCGA
TGGGATGGCCGATGATGTGGATACCATTGAGAACACAGCCGCGGAACTGG
ACAACAGTGCCTCCTCAGAGAAGCACTTGTTTGCTCACAAGGGCCATCAC
CTGATGCACACTGTGAGCCAGGTGGCCACCGCTCAGGAAAGCACCCAAAA
GCAGGCATTGCGCGAAGGAGGAATCATCATTCAGCGGCTAAAGGTTCGCA
GGGGCGGCATCGCTATCGCAGGACCCGGGGGCGTGGCCACGGCGGGCAGC
GGAGGAACGGCGATTGTTGGTCCCGGTGGCTATGCTCTCACCCATCCACG
GAGTCTCACCATCGCCGGTCCCGGGGCCAAGGTGATCTCCATACCGGCAG
ATGTGGACCTTAAAGATGCCCTGGCACGCACCGATCTGGAGACGAGAAGT
TTTCCGCGAGAGGGAAAGATAGTGGCTACAGGACCAACGGTCTACTATGC
TCCACCCACGGGCACAACAACCATGGAGGCGGATCAGGGGGCGGGGCTGG
AGACGGGCCAGTTCGAGTCCTAATCCAGTTCGAGGCTTAAACCTAATAGC
TATTATTTAGCACATTTAGTTAGGATCCATAGTTGGTATTGTCTAGTGTT
CTAATAAATATTTGTATTTCGTAAAAAAAAAAAAAAAAAAA

LD29172.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RA 2214 CG11905-RA 8..2181 1..2174 10870 100 Plus
CG11905.b 2880 CG11905.b 6..2179 1..2174 10870 100 Plus
CG11905.c 2939 CG11905.c 217..2238 153..2174 10110 100 Plus
CG11905.c 2939 CG11905.c 6..157 1..152 760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16920627..16922466 2172..333 9110 99.7 Minus
chr3L 24539361 chr3L 16924810..16924961 152..1 760 100 Minus
chr3L 24539361 chr3L 16924645..16924756 264..153 545 99.1 Minus
chr3L 24539361 chr3L 16922748..16922815 332..265 340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16931170..16933011 2174..333 9210 100 Minus
3L 28110227 3L 16935365..16935516 152..1 760 100 Minus
3L 28110227 3L 16935194..16935305 264..153 560 100 Minus
3L 28110227 3L 16933293..16933360 332..265 340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16924270..16926111 2174..333 9210 100 Minus
3L 28103327 3L 16928465..16928616 152..1 760 100 Minus
3L 28103327 3L 16928294..16928405 264..153 560 100 Minus
3L 28103327 3L 16926393..16926460 332..265 340 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:53:59 has no hits.

LD29172.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:54:35 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16924810..16924961 1..152 100   Minus
chr3L 16920627..16922466 333..2172 99 <- Minus
chr3L 16922748..16922815 265..332 100 <- Minus
chr3L 16924645..16924756 153..264 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:18 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RD 1..1824 250..2073 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:09 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RD 1..1824 250..2073 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:07:38 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 1..1824 250..2073 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:38 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RD 1..1824 250..2073 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:22 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 1..1824 250..2073 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:20 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 1..2172 1..2172 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:09 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 1..2172 1..2172 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:38 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 21..2192 1..2172 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:38 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 1..2172 1..2172 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:22 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 21..2192 1..2172 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:54:35 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16931172..16933011 333..2172 100 <- Minus
3L 16933293..16933360 265..332 100 <- Minus
3L 16935194..16935305 153..264 100 <- Minus
3L 16935365..16935516 1..152 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:54:35 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16931172..16933011 333..2172 100 <- Minus
3L 16933293..16933360 265..332 100 <- Minus
3L 16935194..16935305 153..264 100 <- Minus
3L 16935365..16935516 1..152 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:54:35 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16931172..16933011 333..2172 100 <- Minus
3L 16933293..16933360 265..332 100 <- Minus
3L 16935194..16935305 153..264 100 <- Minus
3L 16935365..16935516 1..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:38 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16924272..16926111 333..2172 100 <- Minus
arm_3L 16926393..16926460 265..332 100 <- Minus
arm_3L 16928294..16928405 153..264 100 <- Minus
arm_3L 16928465..16928616 1..152 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:20 Download gff for LD29172.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16924272..16926111 333..2172 100 <- Minus
3L 16926393..16926460 265..332 100 <- Minus
3L 16928294..16928405 153..264 100 <- Minus
3L 16928465..16928616 1..152 100   Minus

LD29172.hyp Sequence

Translation from 249 to 2072

> LD29172.hyp
MRFLVLSTLLLASLALGQAQQHGGLAVEIQKQRLVKFPEDFEPNAATPSS
EKADEAKRILEQIAKVNEAFGYVKKQPEQPKLPPILDSSQYLFPKPAHQP
FHAHQHHFSGSNGQTLLEPSIRAVKLTRNVAGSYNVPPRLRQAIESTSKE
EKKAQLYFRPKQVEVPKPSSEQEAQQLPAHFVVPVHLYKLNKEEYLKEHA
SQEYKIKGYKIIGDVDSFYGKAKAGRKQGKTTPKYHLFFLPRELALNEDG
TPKRGNSTTIGTTTTKAPVPVNFKEYRLDSREKPVHKPQKIQPTSSPELN
SLNRKKVGSTAKPVRLSGKDAEQQIYQGSTSLNIKATSAPVLLSSTLPPS
GGLLPNRNRLSPFRMPGMNIAEMQNQTSTAIKNAFQNIFKLPFRPPMAAT
AGEGPVVVGNVPVKNHSIDSMDYKWEDENEGAGDGMADDVDTIENTAAEL
DNSASSEKHLFAHKGHHLMHTVSQVATAQESTQKQALREGGIIIQRLKVR
RGGIAIAGPGGVATAGSGGTAIVGPGGYALTHPRSLTIAGPGAKVISIPA
DVDLKDALARTDLETRSFPREGKIVATGPTVYYAPPTGTTTMEADQGAGL
ETGQFES*

LD29172.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PD 607 CG11905-PD 1..607 1..607 3124 100 Plus
CG11905-PG 607 CG11905-PG 1..607 1..607 3124 100 Plus
CG11905-PA 607 CG11905-PA 1..607 1..607 3124 100 Plus

LD29172.pep Sequence

Translation from 249 to 2072

> LD29172.pep
MRFLVLSTLLLASLALGQAQQHGGLAVEIQKQRLVKFPEDFEPNAATPSS
EKADEAKRILEQIAKVNEAFGYVKKQPEQPKLPPILDSSQYLFPKPAHQP
FHAHQHHFSGSNGQTLLEPSIRAVKLTRNVAGSYNVPPRLRQAIESTSKE
EKKAQLYFRPKQVEVPKPSSEQEAQQLPAHFVVPVHLYKLNKEEYLKEHA
SQEYKIKGYKIIGDVDSFYGKAKAGRKQGKTTPKYHLFFLPRELALNEDG
TPKRGNSTTIGTTTTKAPVPVNFKEYRLDSREKPVHKPQKIQPTSSPELN
SLNRKKVGSTAKPVRLSGKDAEQQIYQGSTSLNIKATSAPVLLSSTLPPS
GGLLPNRNRLSPFRMPGMNIAEMQNQTSTAIKNAFQNIFKLPFRPPMAAT
AGEGPVVVGNVPVKNHSIDSMDYKWEDENEGAGDGMADDVDTIENTAAEL
DNSASSEKHLFAHKGHHLMHTVSQVATAQESTQKQALREGGIIIQRLKVR
RGGIAIAGPGGVATAGSGGTAIVGPGGYALTHPRSLTIAGPGAKVISIPA
DVDLKDALARTDLETRSFPREGKIVATGPTVYYAPPTGTTTMEADQGAGL
ETGQFES*

LD29172.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10495-PA 592 GF10495-PA 1..579 1..595 2299 78.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15842-PA 606 GG15842-PA 16..606 17..607 2853 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15130-PA 599 GH15130-PA 1..597 1..607 1892 65.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PD 607 CG11905-PD 1..607 1..607 3124 100 Plus
CG11905-PG 607 CG11905-PG 1..607 1..607 3124 100 Plus
CG11905-PA 607 CG11905-PA 1..607 1..607 3124 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12067-PA 634 GI12067-PA 1..618 1..590 1907 66.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20695-PA 882 GL20695-PA 25..600 24..594 2163 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28285-PA 910 GA28285-PA 25..596 24..590 2157 74.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24359-PA 606 GM24359-PA 1..606 1..607 2896 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12436-PA 1315 GD12436-PA 1..654 1..603 2435 77.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13338-PA 634 GJ13338-PA 23..628 27..596 2015 70.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17151-PA 639 GK17151-PA 1..625 1..591 2030 71.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22180-PA 617 GE22180-PA 1..617 1..607 2804 92.9 Plus