Clone LD29184 Report

Search the DGRC for LD29184

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:291
Well:84
Vector:pOT2
Associated Gene/TranscriptCG4203-RA
Protein status:LD29184.pep: gold
Preliminary Size:2304
Sequenced Size:2127

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4203 2001-01-01 Release 2 assignment
CG4203 2001-11-29 Blastp of sequenced clone
CG4203 2003-01-01 Sim4 clustering to Release 3
CG4203 2008-04-29 Release 5.5 accounting
CG4203 2008-08-15 Release 5.9 accounting
CG4203 2008-12-18 5.12 accounting

Clone Sequence Records

LD29184.complete Sequence

2127 bp (2127 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069560

> LD29184.complete
CCGTGATTGAATAGTCGCGAATTGACAACAAAATTACGCGATAAACAAAC
CGAATTTGGCACCCGCTCACCGAAATGAGTGCATCGACGAGCACGTCGAC
GGCGGCGTCCCAGGACGCCTGCTACATATCGCTCCTTGGCCTGGCGGAGT
ACTTCCGCACCTCGCAGCCGCCGAACATCAAGAAATGCATCCAGTGTCTT
CAAGCCCTGTTCACATTTATGCCGCCCTCGAAGGTCGAGGCGCGGACACA
TTTGCAGATGGGCCAGATCCTGATGGCCTACACTAAGAACATCGATCTGG
CGCGCCAGCATTTGGAGAAGGCGTGGAGCATATCCGAACCGCTGCCCAAT
TTCGACGTTAAGTTCGACACCGCCTCGCTGCTGGCCCAACTGCATCTGCA
GACGGACAGAAACTCGCATCAGGCCAAGGCGATGCTCCGGCGGGCCGTGG
AACTGTCGCAAAACAACGTCTATTGGCACTGCAAGCTGCTGCTCCAGCTG
GCCCAAATACATGCCAGCGATCGCGAGTACTCGCTGGCCTCCGAACTGCT
GGCCGTGGGCGCGGAAAGTGCCGACGAGGCGAGCGCCACGTACCTGAAAG
TGCTCTTCCTGCTCTCGCGCGCCATGATCCTTATGATCGAGCGCAAGACC
AACGACGTGCTCGCCCTGCTCAACTCCGCCGGCCAAATCATTGACAACAA
CATACCCAATCCACACCAGAAGGAGTACCTGAAGGTGTTTTTCCTGGTGC
TACAGGTGTGCTACTACCTGGCCCTCGGGCAGGTAAAAACGGTGAAGCCT
AGTCTCAAACAGCTGCAGATGTCCATACAAACGATAATGGCGCCAAATTG
GCCTTCGGATGAGGCGATTTTCGGGGCAAATCAACTCGAGATGTTTGTGT
GGCTGCCCAAGGAGCAGCTGTACGTCCTGGTCTATCTGGTCACTGTCTCC
CACTCAATGATGGCGGGCTACATGGACAAAGCACAAAAGTACACGGAAAA
AGCACTCACCCAGATCGAAAAACTTAAGCAACAGGAGGACAAACCCATTC
TATCCGTATTCAAGGTGATTCTGCTGGAGCACATTGTGATGTGCCGCATG
GTGATGGGCAACCGGGAACTGGCTATCCGGGAAATAGCAGCCGCGAGAGA
CGTTTGCATGGCCGCTCCGCAACGCAGCCTGCTACGGCGACACTCGGCTC
AGCTGCACTGCCTCATCGGGCTCTACTCCATGTCCACCAACCTCTTTGAG
CATGCGGAGAGGCAGTTCGTCGTGTGCGTGAGTGAGACCAGCGAGCGAGA
CCTGAAACTGTTTGCCAACCTCAACCTGGCGATCATTTATCTGCGCACCA
AGCGGGACACGGACCTCAAGCAAATCCTGGATGCCGTCTCAACGGAAAAC
ACGCACACGTATAGCAGTCAAGCGCTGATGGGAGGCTTCTACTACGTCCA
GGGACTGCATGCTTTTCACAAAAATAGCTTCCACGAGGCGAAACGCTTTC
TGCGTGAAACTCTGAAAATGGCCAACGCCGAAGACCTCAACCGACTGACC
AGCTGCTCGTTGGTTTTGCTATCGCACGTCTTTCTCAGCATCGGAAACTC
AAAGGAAAGCATGAACATGGTGACGCCGGCCATGCAACTGGCCAGTAAGA
TACCCGACATCCACGTCCAGCTGTGGGGATCGGCAATACTAAAGGACCTG
CATCGTATGTCAAAGGATGTGCAGCATGAAAAAGATGCTTATGCTAACCA
CGTTAAATACTCGGAGAACCTGATTGCAGACCAGCGCAAGTGCGTCCAAA
GTGCGCATCACGAACTCGTCAACTGGTTCCAGGGCGATCCGCCAGTGACG
AGTGGTCCGCCGGCTGCTCCCGTCCTGCTCATGCCAGAGTCCTCCGTTAC
AGCCTCAGTCCCCGTCATCGCCTCCACATCGACAGCCATGCAGCCGGCGG
GGCAATACGGTCAGTTCTACTAGCAATGAGATGATTATGCAATGTAACTT
TAAGCTTTTATTTTTATCTACGACCTAGCGACTAAGTTAAGACTAAAGAT
GTTCTAAAGTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

LD29184.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4203-RA 2238 CG4203-RA 120..2185 1..2066 10330 100 Plus
CG6654-RA 2306 CG6654-RA 2234..2306 2066..1994 365 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11033856..11035347 1..1492 7415 99.8 Plus
chr3R 27901430 chr3R 11035406..11035977 1493..2064 2815 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15209226..15210717 1..1492 7460 100 Plus
3R 32079331 3R 15210776..15211349 1493..2066 2870 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14950057..14951548 1..1492 7460 100 Plus
3R 31820162 3R 14951607..14952180 1493..2066 2870 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:04:35 has no hits.

LD29184.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:05:39 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11033856..11035347 1..1492 99 -> Plus
chr3R 11035406..11035977 1493..2064 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:19 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
CG4203-RA 1..1899 75..1973 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:26:40 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
CG4203-RA 1..1899 75..1973 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:01:19 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
CG4203-RA 1..1899 75..1973 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:02 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
CG4203-RA 1..1899 75..1973 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:21:38 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
CG4203-RA 1..1899 75..1973 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:08 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
CG4203-RA 21..2084 1..2064 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:26:40 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
CG4203-RA 21..2084 1..2064 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:01:19 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
CG4203-RA 23..2086 1..2064 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:03 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
CG4203-RA 21..2084 1..2064 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:21:38 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
CG4203-RA 23..2086 1..2064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:05:39 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15209226..15210717 1..1492 100 -> Plus
3R 15210776..15211347 1493..2064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:05:39 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15209226..15210717 1..1492 100 -> Plus
3R 15210776..15211347 1493..2064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:05:39 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15209226..15210717 1..1492 100 -> Plus
3R 15210776..15211347 1493..2064 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:01:19 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11034948..11036439 1..1492 100 -> Plus
arm_3R 11036498..11037069 1493..2064 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:10 Download gff for LD29184.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14950057..14951548 1..1492 100 -> Plus
3R 14951607..14952178 1493..2064 100   Plus

LD29184.hyp Sequence

Translation from 74 to 1972

> LD29184.hyp
MSASTSTSTAASQDACYISLLGLAEYFRTSQPPNIKKCIQCLQALFTFMP
PSKVEARTHLQMGQILMAYTKNIDLARQHLEKAWSISEPLPNFDVKFDTA
SLLAQLHLQTDRNSHQAKAMLRRAVELSQNNVYWHCKLLLQLAQIHASDR
EYSLASELLAVGAESADEASATYLKVLFLLSRAMILMIERKTNDVLALLN
SAGQIIDNNIPNPHQKEYLKVFFLVLQVCYYLALGQVKTVKPSLKQLQMS
IQTIMAPNWPSDEAIFGANQLEMFVWLPKEQLYVLVYLVTVSHSMMAGYM
DKAQKYTEKALTQIEKLKQQEDKPILSVFKVILLEHIVMCRMVMGNRELA
IREIAAARDVCMAAPQRSLLRRHSAQLHCLIGLYSMSTNLFEHAERQFVV
CVSETSERDLKLFANLNLAIIYLRTKRDTDLKQILDAVSTENTHTYSSQA
LMGGFYYVQGLHAFHKNSFHEAKRFLRETLKMANAEDLNRLTSCSLVLLS
HVFLSIGNSKESMNMVTPAMQLASKIPDIHVQLWGSAILKDLHRMSKDVQ
HEKDAYANHVKYSENLIADQRKCVQSAHHELVNWFQGDPPVTSGPPAAPV
LLMPESSVTASVPVIASTSTAMQPAGQYGQFY*

LD29184.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4203-PA 632 CG4203-PA 1..632 1..632 3224 100 Plus

LD29184.pep Sequence

Translation from 74 to 1972

> LD29184.pep
MSASTSTSTAASQDACYISLLGLAEYFRTSQPPNIKKCIQCLQALFTFMP
PSKVEARTHLQMGQILMAYTKNIDLARQHLEKAWSISEPLPNFDVKFDTA
SLLAQLHLQTDRNSHQAKAMLRRAVELSQNNVYWHCKLLLQLAQIHASDR
EYSLASELLAVGAESADEASATYLKVLFLLSRAMILMIERKTNDVLALLN
SAGQIIDNNIPNPHQKEYLKVFFLVLQVCYYLALGQVKTVKPSLKQLQMS
IQTIMAPNWPSDEAIFGANQLEMFVWLPKEQLYVLVYLVTVSHSMMAGYM
DKAQKYTEKALTQIEKLKQQEDKPILSVFKVILLEHIVMCRMVMGNRELA
IREIAAARDVCMAAPQRSLLRRHSAQLHCLIGLYSMSTNLFEHAERQFVV
CVSETSERDLKLFANLNLAIIYLRTKRDTDLKQILDAVSTENTHTYSSQA
LMGGFYYVQGLHAFHKNSFHEAKRFLRETLKMANAEDLNRLTSCSLVLLS
HVFLSIGNSKESMNMVTPAMQLASKIPDIHVQLWGSAILKDLHRMSKDVQ
HEKDAYANHVKYSENLIADQRKCVQSAHHELVNWFQGDPPVTSGPPAAPV
LLMPESSVTASVPVIASTSTAMQPAGQYGQFY*

LD29184.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17837-PA 639 GF17837-PA 13..639 13..632 3140 93.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16893-PA 632 GG16893-PA 1..632 1..632 3397 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18976-PA 623 GH18976-PA 2..623 4..632 3023 90.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Mau2-PA 632 CG4203-PA 1..632 1..632 3224 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22403-PA 625 GI22403-PA 2..625 4..632 2995 89 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22140-PA 620 GL22140-PA 2..620 4..632 3070 90.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18027-PA 620 GA18027-PA 2..620 4..632 3070 90.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24202-PA 632 GM24202-PA 1..632 1..632 3393 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18992-PA 584 GD18992-PA 1..584 49..632 3134 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10962-PA 621 GJ10962-PA 2..621 4..632 3040 90.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13302-PA 526 GK13302-PA 1..525 1..523 2597 92.6 Plus
Dwil\GK13304-PA 117 GK13304-PA 1..117 545..632 286 51.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24275-PA 632 GE24275-PA 1..632 1..632 3386 99.2 Plus