Clone LD29223 Report

Search the DGRC for LD29223

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:292
Well:23
Vector:pOT2
Associated Gene/Transcriptpar-6-RA
Protein status:LD29223.pep: gold
Preliminary Size:2442
Sequenced Size:2550

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5884 2001-01-01 Release 2 assignment
CG5884 2001-10-10 Blastp of sequenced clone
CG5884 2003-01-01 Sim4 clustering to Release 3
par-6 2008-04-29 Release 5.5 accounting
par-6 2008-08-15 Release 5.9 accounting
par-6 2008-12-18 5.12 accounting

Clone Sequence Records

LD29223.complete Sequence

2550 bp (2550 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061369

> LD29223.complete
GTTCATCCATCCATTTTTTTTATTTAATTAGTTTTAATTTAGATTTCTAA
CTCTAATTTATTGGCGGCCCCCCACTATCGTCGCTCCCCGCCATCGGTAC
GCTGCACTTTGGTTCGGTTTCGGTTCGCATCGGGCGTATCGGTTCGATTT
CGATCCTGAAGATCAGATCAGAATCTGCGGAACTCAACTGCCGTGTTTTG
TGTTGTGTGTGAGGAACGGAGAGGAAAACTGTCAGTGCACTCTTGATCGG
GCGGATCGGAGAAAATGTCGAAGAACAAGATAAACACAACGTCCGCAACG
GCGGCCAGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCAGA
GTTTCGGAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGACA
AATTCGCATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGTTT
CTCATACTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAACAA
CGACGATAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACGGG
TCATTGTGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAACG
ATGAAACCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCAGT
GAAGACAAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGTCT
CGGCCATTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGCGG
CTACTGAAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGATGG
CACCTCTGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCATTT
TTATATCCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGCTG
GCCGTCAACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGCAA
GACTCTGGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCTGA
TAATCACCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATCGC
GGATCCTTTTCAAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACTAA
TAATACAAACACCTCCGACGAGATCGAGCACGACGATCAGGACGATATTG
TGGACTTAACGGGCGTCACCCTCGACGAGAGTCCAACGTCCACGTCAGCC
GGCAATCACAACCATCAGCCGCCATTATCCTCATCACCCTCGTCGCACCA
CCAGCAGGCAGCCTCCAATGCGTCCACGATAATGGCCAGCGATGTCAAGG
ATGGAGTGCTGCATTTGTAGGATTAACCCGGCGATACAGCACCTCCAGCA
GACGCAGCCAGAACTTAAGCAACGGAAAACGCGAATTCATCGCTGAGAAG
TGCAGAGGATTTTCAGTTTATCAGACTTAACTTTCCTTAAGATCGAATAA
GTTCGTTAAACTCGAGTCAATTATTTAAAGTTATACAAGTTAGGCCAACT
TATTCACATGTACACTGATCGCTTGTATATCGCTCACTTACTAAAGCGAC
TGTCATAGCTCAACCAGCCATGATTTGAAAAGTCACCTTATAAAATCTAT
TGGTATTAGCCTGAAAGCCTGATTGATTGAGTAAACAACATATCGGCCAT
ATCCCATTCATTTCTTGTTAATCCTGGCCATTCAAATTTAACGTTCTGCA
AAATTTCCAGTCCGATTGTAGGTGAGCAATATATAAAACACGATTGTATA
TACATGTGTAATCATCATACGACTTTCCTCCATACATTCCACGAAACACT
CAAAGTCAAAGAAAACACACCTATTCATTTGCACGTTTTTGAATGCAGTC
TCTTGTTTTTATCTTTTTTCCTGGCATATATATATATGTGTATTTAAATT
TGTAAGATTTACGTCTTGTTATTATTCTTGCTTGTTGTATTAGACTAGAG
TGAGACAGCTAGAGGAGAGAGTGAAATAGAGAGAGGGCATCAAATGCTGA
AGGCAGATCAATTTATTTAACTTAACCATTTGAAACGGCAATAATTGTAA
CAAAATCACATATACGAGCACGAATAATTTATAAAAAAAAAAAACATTCC
ATTTTATGTACTGTGACAAGTCGGAAAAGCCTAACAAAATTATATTTCCT
GATTTGTAAGCCTTGTTTTTAATTTGAGCCGATCATTTTGCGTATATCTG
CTATGTTTTGTTTAGCTCAATTTCTTATTTTTTCGGCATTACTCATTATA
TCTGTTTATTTTAAAAACCATTTGTAATTTTTAACTTTTGTTTTTTCGTC
ATTGTGTCCAATACTCGTCCAAGTTCTTTGTTGTCATTGTCATCACTTAG
AGTTATGGAGAAAGGATAGAAAAACGAGGAGATAAAGTTAACAAAACGTT
AAGATACAAACGAAACACCAACAGCGCCTTCGCCTTCAAGAGAGCAATTC
GATACTTTTTATATATATACAAGAGAATATATAAACGAATACAATCTATG
TTATGTACGTACCCCTGTACACACAATTGAAAAAAAAAAAAAAAAAAAAA

LD29223.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-RA 3070 par-6-RA 71..2601 1..2531 12655 100 Plus
par-6.c 3033 par-6.c 79..2567 43..2531 12445 100 Plus
par-6.a 2894 par-6.a 57..2428 160..2531 11860 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17594012..17595973 568..2529 9600 99.5 Plus
chrX 22417052 chrX 17592732..17593070 1..339 1650 99.1 Plus
chrX 22417052 chrX 17593715..17593949 338..572 1160 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17704667..17706630 568..2531 9820 100 Plus
X 23542271 X 17703387..17703725 1..339 1695 100 Plus
X 23542271 X 17704370..17704604 338..572 1160 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17712765..17714728 568..2531 9820 100 Plus
X 23527363 X 17711485..17711823 1..339 1695 100 Plus
X 23527363 X 17712468..17712702 338..572 1160 99.5 Plus
Blast to na_te.dros performed 2019-03-15 13:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 6117..6262 2340..2184 146 60.8 Minus
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 670..813 1403..1540 121 58.2 Plus
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 790..875 1353..1436 119 61.6 Plus

LD29223.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:38:42 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17592732..17593070 1..339 99 -> Plus
chrX 17593717..17593945 340..568 100 -> Plus
chrX 17594013..17595973 569..2529 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:25 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 1..1056 265..1320 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:25 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 1..1056 265..1320 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:08:00 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 1..1056 265..1320 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:22 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 1..1056 265..1320 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:36:41 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 1..1056 265..1320 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:30 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 59..2587 1..2529 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:25 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 59..2587 1..2529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:08:00 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 36..2564 1..2529 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:25 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 59..2587 1..2529 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:36:41 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 36..2564 1..2529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:42 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
X 17703387..17703725 1..339 100 -> Plus
X 17704372..17704600 340..568 100 -> Plus
X 17704668..17706628 569..2529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:42 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
X 17703387..17703725 1..339 100 -> Plus
X 17704372..17704600 340..568 100 -> Plus
X 17704668..17706628 569..2529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:42 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
X 17703387..17703725 1..339 100 -> Plus
X 17704372..17704600 340..568 100 -> Plus
X 17704668..17706628 569..2529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:08:00 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17597420..17597758 1..339 100 -> Plus
arm_X 17598405..17598633 340..568 100 -> Plus
arm_X 17598701..17600661 569..2529 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:30 Download gff for LD29223.complete
Subject Subject Range Query Range Percent Splice Strand
X 17711485..17711823 1..339 100 -> Plus
X 17712470..17712698 340..568 100 -> Plus
X 17712766..17714726 569..2529 100   Plus

LD29223.hyp Sequence

Translation from 264 to 1319

> LD29223.hyp
MSKNKINTTSATAASDTNLIEVKSKFDAEFRRWSFKRNEAEQSFDKFASL
IEQLHKLTNIQFLILYIDPRDNDLLPINNDDNFGRALKTARPLLRVIVQR
KDDLNEYSGFGTMKPRNLIGSILMGHTPVKTKAPSISIPHDFRQVSAIID
VDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRL
VPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK
PANQRTLTSTHRGSFSRNSQLSSGSHHTNNTNTSDEIEHDDQDDIVDLTG
VTLDESPTSTSAGNHNHQPPLSSSPSSHHQQAASNASTIMASDVKDGVLH
L*

LD29223.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-PB 351 CG5884-PB 1..351 1..351 1786 100 Plus
par-6-PA 351 CG5884-PA 1..351 1..351 1786 100 Plus
metro-PD 546 CG30021-PD 4..224 11..255 154 25.8 Plus
metro-PC 585 CG30021-PC 4..224 11..255 154 25.8 Plus

LD29223.pep Sequence

Translation from 264 to 1319

> LD29223.pep
MSKNKINTTSATAASDTNLIEVKSKFDAEFRRWSFKRNEAEQSFDKFASL
IEQLHKLTNIQFLILYIDPRDNDLLPINNDDNFGRALKTARPLLRVIVQR
KDDLNEYSGFGTMKPRNLIGSILMGHTPVKTKAPSISIPHDFRQVSAIID
VDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRL
VPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK
PANQRTLTSTHRGSFSRNSQLSSGSHHTNNTNTSDEIEHDDQDDIVDLTG
VTLDESPTSTSAGNHNHQPPLSSSPSSHHQQAASNASTIMASDVKDGVLH
L*

LD29223.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21116-PA 355 GF21116-PA 1..355 1..351 1744 94.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19128-PA 351 GG19128-PA 1..351 1..351 1826 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12629-PA 347 GH12629-PA 1..347 1..351 1577 91.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-PB 351 CG5884-PB 1..351 1..351 1786 100 Plus
par-6-PA 351 CG5884-PA 1..351 1..351 1786 100 Plus
metro-PD 546 CG30021-PD 4..224 11..255 154 25.8 Plus
metro-PC 585 CG30021-PC 4..224 11..255 154 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11043-PA 350 GI11043-PA 1..350 1..351 1576 91.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15988-PA 357 GL15988-PA 1..357 1..351 1722 93.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19201-PA 357 GA19201-PA 1..357 1..351 1726 94.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13521-PA 337 GM13521-PA 1..337 1..351 1730 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15678-PA 351 GD15678-PA 1..351 1..351 1836 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15823-PA 356 GJ15823-PA 1..356 1..351 1626 91.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16408-PA 379 GK16408-PA 1..379 1..351 1555 82.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17677-PA 351 GE17677-PA 1..351 1..351 1835 99.1 Plus