BDGP Sequence Production Resources |
Search the DGRC for LD29223
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 292 |
Well: | 23 |
Vector: | pOT2 |
Associated Gene/Transcript | par-6-RA |
Protein status: | LD29223.pep: gold |
Preliminary Size: | 2442 |
Sequenced Size: | 2550 |
Gene | Date | Evidence |
---|---|---|
CG5884 | 2001-01-01 | Release 2 assignment |
CG5884 | 2001-10-10 | Blastp of sequenced clone |
CG5884 | 2003-01-01 | Sim4 clustering to Release 3 |
par-6 | 2008-04-29 | Release 5.5 accounting |
par-6 | 2008-08-15 | Release 5.9 accounting |
par-6 | 2008-12-18 | 5.12 accounting |
2550 bp (2550 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061369
> LD29223.complete GTTCATCCATCCATTTTTTTTATTTAATTAGTTTTAATTTAGATTTCTAA CTCTAATTTATTGGCGGCCCCCCACTATCGTCGCTCCCCGCCATCGGTAC GCTGCACTTTGGTTCGGTTTCGGTTCGCATCGGGCGTATCGGTTCGATTT CGATCCTGAAGATCAGATCAGAATCTGCGGAACTCAACTGCCGTGTTTTG TGTTGTGTGTGAGGAACGGAGAGGAAAACTGTCAGTGCACTCTTGATCGG GCGGATCGGAGAAAATGTCGAAGAACAAGATAAACACAACGTCCGCAACG GCGGCCAGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCAGA GTTTCGGAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGACA AATTCGCATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGTTT CTCATACTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAACAA CGACGATAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACGGG TCATTGTGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAACG ATGAAACCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCAGT GAAGACAAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGTCT CGGCCATTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGCGG CTACTGAAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGATGG CACCTCTGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCATTT TTATATCCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGCTG GCCGTCAACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGCAA GACTCTGGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCTGA TAATCACCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATCGC GGATCCTTTTCAAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACTAA TAATACAAACACCTCCGACGAGATCGAGCACGACGATCAGGACGATATTG TGGACTTAACGGGCGTCACCCTCGACGAGAGTCCAACGTCCACGTCAGCC GGCAATCACAACCATCAGCCGCCATTATCCTCATCACCCTCGTCGCACCA CCAGCAGGCAGCCTCCAATGCGTCCACGATAATGGCCAGCGATGTCAAGG ATGGAGTGCTGCATTTGTAGGATTAACCCGGCGATACAGCACCTCCAGCA GACGCAGCCAGAACTTAAGCAACGGAAAACGCGAATTCATCGCTGAGAAG TGCAGAGGATTTTCAGTTTATCAGACTTAACTTTCCTTAAGATCGAATAA GTTCGTTAAACTCGAGTCAATTATTTAAAGTTATACAAGTTAGGCCAACT TATTCACATGTACACTGATCGCTTGTATATCGCTCACTTACTAAAGCGAC TGTCATAGCTCAACCAGCCATGATTTGAAAAGTCACCTTATAAAATCTAT TGGTATTAGCCTGAAAGCCTGATTGATTGAGTAAACAACATATCGGCCAT ATCCCATTCATTTCTTGTTAATCCTGGCCATTCAAATTTAACGTTCTGCA AAATTTCCAGTCCGATTGTAGGTGAGCAATATATAAAACACGATTGTATA TACATGTGTAATCATCATACGACTTTCCTCCATACATTCCACGAAACACT CAAAGTCAAAGAAAACACACCTATTCATTTGCACGTTTTTGAATGCAGTC TCTTGTTTTTATCTTTTTTCCTGGCATATATATATATGTGTATTTAAATT TGTAAGATTTACGTCTTGTTATTATTCTTGCTTGTTGTATTAGACTAGAG TGAGACAGCTAGAGGAGAGAGTGAAATAGAGAGAGGGCATCAAATGCTGA AGGCAGATCAATTTATTTAACTTAACCATTTGAAACGGCAATAATTGTAA CAAAATCACATATACGAGCACGAATAATTTATAAAAAAAAAAAACATTCC ATTTTATGTACTGTGACAAGTCGGAAAAGCCTAACAAAATTATATTTCCT GATTTGTAAGCCTTGTTTTTAATTTGAGCCGATCATTTTGCGTATATCTG CTATGTTTTGTTTAGCTCAATTTCTTATTTTTTCGGCATTACTCATTATA TCTGTTTATTTTAAAAACCATTTGTAATTTTTAACTTTTGTTTTTTCGTC ATTGTGTCCAATACTCGTCCAAGTTCTTTGTTGTCATTGTCATCACTTAG AGTTATGGAGAAAGGATAGAAAAACGAGGAGATAAAGTTAACAAAACGTT AAGATACAAACGAAACACCAACAGCGCCTTCGCCTTCAAGAGAGCAATTC GATACTTTTTATATATATACAAGAGAATATATAAACGAATACAATCTATG TTATGTACGTACCCCTGTACACACAATTGAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 17594012..17595973 | 568..2529 | 9600 | 99.5 | Plus |
chrX | 22417052 | chrX | 17592732..17593070 | 1..339 | 1650 | 99.1 | Plus |
chrX | 22417052 | chrX | 17593715..17593949 | 338..572 | 1160 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
opus | 7521 | opus OPUS 7521bp | 6117..6262 | 2340..2184 | 146 | 60.8 | Minus |
Dbuz\BuT2 | 2775 | Dbuz\BuT2 BUT2 2775bp | 670..813 | 1403..1540 | 121 | 58.2 | Plus |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 790..875 | 1353..1436 | 119 | 61.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 17592732..17593070 | 1..339 | 99 | -> | Plus |
chrX | 17593717..17593945 | 340..568 | 100 | -> | Plus |
chrX | 17594013..17595973 | 569..2529 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
par-6-RA | 1..1056 | 265..1320 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
par-6-RA | 1..1056 | 265..1320 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
par-6-RA | 1..1056 | 265..1320 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
par-6-RA | 1..1056 | 265..1320 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
par-6-RA | 1..1056 | 265..1320 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
par-6-RA | 59..2587 | 1..2529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
par-6-RA | 59..2587 | 1..2529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
par-6-RA | 36..2564 | 1..2529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
par-6-RA | 59..2587 | 1..2529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
par-6-RA | 36..2564 | 1..2529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17703387..17703725 | 1..339 | 100 | -> | Plus |
X | 17704372..17704600 | 340..568 | 100 | -> | Plus |
X | 17704668..17706628 | 569..2529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17703387..17703725 | 1..339 | 100 | -> | Plus |
X | 17704372..17704600 | 340..568 | 100 | -> | Plus |
X | 17704668..17706628 | 569..2529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17703387..17703725 | 1..339 | 100 | -> | Plus |
X | 17704372..17704600 | 340..568 | 100 | -> | Plus |
X | 17704668..17706628 | 569..2529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 17597420..17597758 | 1..339 | 100 | -> | Plus |
arm_X | 17598405..17598633 | 340..568 | 100 | -> | Plus |
arm_X | 17598701..17600661 | 569..2529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17711485..17711823 | 1..339 | 100 | -> | Plus |
X | 17712470..17712698 | 340..568 | 100 | -> | Plus |
X | 17712766..17714726 | 569..2529 | 100 | Plus |
Translation from 264 to 1319
> LD29223.hyp MSKNKINTTSATAASDTNLIEVKSKFDAEFRRWSFKRNEAEQSFDKFASL IEQLHKLTNIQFLILYIDPRDNDLLPINNDDNFGRALKTARPLLRVIVQR KDDLNEYSGFGTMKPRNLIGSILMGHTPVKTKAPSISIPHDFRQVSAIID VDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRL VPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK PANQRTLTSTHRGSFSRNSQLSSGSHHTNNTNTSDEIEHDDQDDIVDLTG VTLDESPTSTSAGNHNHQPPLSSSPSSHHQQAASNASTIMASDVKDGVLH L*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
par-6-PB | 351 | CG5884-PB | 1..351 | 1..351 | 1786 | 100 | Plus |
par-6-PA | 351 | CG5884-PA | 1..351 | 1..351 | 1786 | 100 | Plus |
metro-PD | 546 | CG30021-PD | 4..224 | 11..255 | 154 | 25.8 | Plus |
metro-PC | 585 | CG30021-PC | 4..224 | 11..255 | 154 | 25.8 | Plus |
Translation from 264 to 1319
> LD29223.pep MSKNKINTTSATAASDTNLIEVKSKFDAEFRRWSFKRNEAEQSFDKFASL IEQLHKLTNIQFLILYIDPRDNDLLPINNDDNFGRALKTARPLLRVIVQR KDDLNEYSGFGTMKPRNLIGSILMGHTPVKTKAPSISIPHDFRQVSAIID VDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRL VPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK PANQRTLTSTHRGSFSRNSQLSSGSHHTNNTNTSDEIEHDDQDDIVDLTG VTLDESPTSTSAGNHNHQPPLSSSPSSHHQQAASNASTIMASDVKDGVLH L*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21116-PA | 355 | GF21116-PA | 1..355 | 1..351 | 1744 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19128-PA | 351 | GG19128-PA | 1..351 | 1..351 | 1826 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12629-PA | 347 | GH12629-PA | 1..347 | 1..351 | 1577 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
par-6-PB | 351 | CG5884-PB | 1..351 | 1..351 | 1786 | 100 | Plus |
par-6-PA | 351 | CG5884-PA | 1..351 | 1..351 | 1786 | 100 | Plus |
metro-PD | 546 | CG30021-PD | 4..224 | 11..255 | 154 | 25.8 | Plus |
metro-PC | 585 | CG30021-PC | 4..224 | 11..255 | 154 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11043-PA | 350 | GI11043-PA | 1..350 | 1..351 | 1576 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15988-PA | 357 | GL15988-PA | 1..357 | 1..351 | 1722 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19201-PA | 357 | GA19201-PA | 1..357 | 1..351 | 1726 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13521-PA | 337 | GM13521-PA | 1..337 | 1..351 | 1730 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15678-PA | 351 | GD15678-PA | 1..351 | 1..351 | 1836 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15823-PA | 356 | GJ15823-PA | 1..356 | 1..351 | 1626 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16408-PA | 379 | GK16408-PA | 1..379 | 1..351 | 1555 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17677-PA | 351 | GE17677-PA | 1..351 | 1..351 | 1835 | 99.1 | Plus |