BDGP Sequence Production Resources |
Search the DGRC for LD29228
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 292 |
Well: | 28 |
Vector: | pOT2 |
Associated Gene/Transcript | CG12880-RA |
Protein status: | LD29228.pep: gold |
Preliminary Size: | 1888 |
Sequenced Size: | 1898 |
Gene | Date | Evidence |
---|---|---|
CG12880 | 2001-01-01 | Release 2 assignment |
CG12880 | 2001-10-10 | Blastp of sequenced clone |
CG12880 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12880 | 2008-04-29 | Release 5.5 accounting |
CG12880 | 2008-08-15 | Release 5.9 accounting |
CG12880 | 2008-12-18 | 5.12 accounting |
1898 bp (1898 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061370
> LD29228.complete ATTTTATCGTGTGCGGACGTATCTGCGGTCGAATTGCGGAACTTGAAAAT CCAAATCCGAGTGGCAAAGATACCGAATTTCGAACTGAAAACCGTGCTCG TAGTTGACGCGAATTTTTAGATGCACTTTCTCAGCATTTGGCGCCACAAG CAAAAGACTTAGAAACTCTAATTCGATTGCGTTTACTCGAAATCGTTGCT TGCCACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCATCAACATGCG TCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTCTACTGCCTCC TGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGTAGCTCTGGCT GCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGCACAGGTCGAA GAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTGACGGCTATCA AGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAACAAGAAGCTG CTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACAGCCACAACAG GAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGCGATGATTCAC ACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTATGCTGGACCC GGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTGGCCACAAAGG TAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCAGCAGCCGCAT CAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGCGTTGAAAGCT AACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCCGGCCGGGCCG CATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTGGCCAAGAAGC CCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACTGCTGGACATC CAGGGTGTGCCCACGTGGCGCCAGCCCTGGGAGAACGAGACCGCCGAGAA GGGCTTCAGTGCCGGCGGCGGGAAGGCCAAGTATCGCAAATCCCTGAAGC CCAAGTCACCCACATATTATGCACCCGCCCAGGCGGTCAGCAAGCAGAGC TTCCACAAGTACTTCGCGGGCAATGGCAAGCCCAAGGGATTCTATGTCAT CAAGGAGCACCAGAAGAAGCCGCAGTTCTACCAGAACATCATCTCGTAAT CCAACGGCATACCCTCGGTATACCCAGGGAATACCCTTGAAAGACTGCGG TGCCGGGCGTTCTATTTTCAATATTCTAACGAAGGGGAGCTTCTCCCCTC TTCCGTCCAGTTTCCACTTGGAATACCCAATCCTGGCGAATCCCGATCAC ATCTATAGCATCCTGGCCAAATGTTTAACAATTGCGATGGGTGCGTTCTA TTTTTATATAACGGCAATGAATACAATAACAGGTGGGCTGGTCCAGGTGG GGTGCATCTCATATCCATCCATGTGGTCAGCCATATCAGCACAAAGAACA AAGTGTCAAAGTGACATGACTTCATTCGAGATTTCAATGTAAAAACAAAG AGTTTAAAGTTCAGAAAGGGGTTTTGATTTGAGCACAAACTGAGTTGAAA CTAATCGGATTATATATTTAATTGAAATTTAATATCTAAAGTTTAATCAG CTTAGCAGCAGAGTGTGAAATATTCGAGTGGCACTTCTTCATACACATAT CGTTTTGATCGGAAATCCCAAAATCCTTTTCCTATGAAGGACACCCCATC CGAAGGACCAGTCCAAACTGCATTTAGCTAAGCAACTGCGGCAAGCAATA AATTATGGCATAATCAAGCTAGGTTTAAGTGCATGAACGACTTTGTTTTG ATAAATAAAAATATTGACTGATTTTTAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12880-RA | 1937 | CG12880-RA | 19..1896 | 1..1878 | 9390 | 100 | Plus |
CG31055-RB | 2004 | CG31055-RB | 1368..1654 | 287..1 | 1435 | 100 | Minus |
CG31055-RA | 2012 | CG31055-RA | 1376..1662 | 287..1 | 1435 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 23514653..23515714 | 811..1876 | 5145 | 99.3 | Plus |
chr3R | 27901430 | chr3R | 23508897..23509183 | 1..287 | 1435 | 100 | Plus |
chr3R | 27901430 | chr3R | 23513466..23513789 | 503..814 | 1405 | 96.3 | Plus |
chr3R | 27901430 | chr3R | 23512701..23512920 | 286..505 | 1085 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 27691725..27692792 | 811..1878 | 5340 | 100 | Plus |
3R | 32079331 | 3R | 27690550..27690861 | 503..814 | 1560 | 100 | Plus |
3R | 32079331 | 3R | 27685980..27686266 | 1..287 | 1435 | 100 | Plus |
3R | 32079331 | 3R | 27689785..27690004 | 286..505 | 1100 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 27432556..27433623 | 811..1878 | 5340 | 100 | Plus |
3R | 31820162 | 3R | 27431381..27431692 | 503..814 | 1560 | 100 | Plus |
3R | 31820162 | 3R | 27426811..27427097 | 1..287 | 1435 | 100 | Plus |
3R | 31820162 | 3R | 27430616..27430835 | 286..505 | 1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 23508897..23509182 | 1..286 | 100 | -> | Plus |
chr3R | 23512702..23512920 | 287..505 | 99 | -> | Plus |
chr3R | 23513469..23513787 | 506..812 | 96 | -> | Plus |
chr3R | 23514655..23515714 | 813..1876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12880-RA | 1..993 | 207..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12880-RA | 1..993 | 207..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12880-RA | 1..993 | 207..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12880-RA | 1..993 | 207..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12880-RA | 1..993 | 207..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12880-RA | 19..1894 | 1..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12880-RA | 19..1894 | 1..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12880-RA | 19..1894 | 1..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12880-RA | 19..1894 | 1..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12880-RA | 19..1894 | 1..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27685980..27686265 | 1..286 | 100 | -> | Plus |
3R | 27689786..27690004 | 287..505 | 100 | -> | Plus |
3R | 27690553..27690859 | 506..812 | 100 | -> | Plus |
3R | 27691727..27692790 | 813..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27685980..27686265 | 1..286 | 100 | -> | Plus |
3R | 27689786..27690004 | 287..505 | 100 | -> | Plus |
3R | 27690553..27690859 | 506..812 | 100 | -> | Plus |
3R | 27691727..27692790 | 813..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27685980..27686265 | 1..286 | 100 | -> | Plus |
3R | 27689786..27690004 | 287..505 | 100 | -> | Plus |
3R | 27690553..27690859 | 506..812 | 100 | -> | Plus |
3R | 27691727..27692790 | 813..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 23511702..23511987 | 1..286 | 100 | -> | Plus |
arm_3R | 23515508..23515726 | 287..505 | 100 | -> | Plus |
arm_3R | 23516275..23516581 | 506..812 | 100 | -> | Plus |
arm_3R | 23517449..23518512 | 813..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27426811..27427096 | 1..286 | 100 | -> | Plus |
3R | 27430617..27430835 | 287..505 | 100 | -> | Plus |
3R | 27431384..27431690 | 506..812 | 100 | -> | Plus |
3R | 27432558..27433621 | 813..1876 | 100 | Plus |
Translation from 206 to 1198
> LD29228.pep MLKVSVGKHKFINMRPSWMGTAAWLLGLYCLLCIAAMVEGASNSVALAAP TASAAKDVAHMHRSKRLDRRSGAGSSPLTAIKQPKQLARSAHGLNKKLLS QMGFMKVKAPNSHNRKRLAVESRRHSSRDDSHMFIIKLPPNMHYYAGPGA KNSIAEQQDKSGHKGNAPSTMASSTPVAAAASAAVATSPVAEASALKANG KKVSFPFSSNGRPGRIYHWNLPVLKEALAKKPHFAHVSAADRNRLLDIQG VPTWRQPWENETAEKGFSAGGGKAKYRKSLKPKSPTYYAPAQAVSKQSFH KYFAGNGKPKGFYVIKEHQKKPQFYQNIIS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16298-PA | 323 | GF16298-PA | 1..323 | 14..330 | 1223 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11569-PA | 341 | GG11569-PA | 1..341 | 1..330 | 1402 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16520-PA | 319 | GH16520-PA | 1..319 | 47..330 | 983 | 62.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12880-PA | 330 | CG12880-PA | 1..330 | 1..330 | 1721 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22021-PA | 332 | GI22021-PA | 4..332 | 27..330 | 949 | 58.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13708-PA | 338 | GL13708-PA | 17..338 | 28..330 | 928 | 67 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11881-PA | 336 | GA11881-PA | 7..336 | 22..330 | 955 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16351-PA | 330 | GM16351-PA | 1..330 | 1..330 | 1566 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21347-PA | 271 | GD21347-PA | 1..146 | 1..146 | 719 | 93.2 | Plus |
Dsim\GD21347-PA | 271 | GD21347-PA | 150..271 | 209..330 | 670 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10470-PA | 377 | GJ10470-PA | 82..377 | 46..330 | 1027 | 67.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11765-PA | 273 | GK11765-PA | 19..273 | 87..330 | 862 | 67 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23754-PA | 361 | GE23754-PA | 1..361 | 1..330 | 1422 | 83.1 | Plus |
Translation from 206 to 1198
> LD29228.hyp MLKVSVGKHKFINMRPSWMGTAAWLLGLYCLLCIAAMVEGASNSVALAAP TASAAKDVAHMHRSKRLDRRSGAGSSPLTAIKQPKQLARSAHGLNKKLLS QMGFMKVKAPNSHNRKRLAVESRRHSSRDDSHMFIIKLPPNMHYYAGPGA KNSIAEQQDKSGHKGNAPSTMASSTPVAAAASAAVATSPVAEASALKANG KKVSFPFSSNGRPGRIYHWNLPVLKEALAKKPHFAHVSAADRNRLLDIQG VPTWRQPWENETAEKGFSAGGGKAKYRKSLKPKSPTYYAPAQAVSKQSFH KYFAGNGKPKGFYVIKEHQKKPQFYQNIIS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12880-PA | 330 | CG12880-PA | 1..330 | 1..330 | 1721 | 100 | Plus |