Clone LD29228 Report

Search the DGRC for LD29228

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:292
Well:28
Vector:pOT2
Associated Gene/TranscriptCG12880-RA
Protein status:LD29228.pep: gold
Preliminary Size:1888
Sequenced Size:1898

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12880 2001-01-01 Release 2 assignment
CG12880 2001-10-10 Blastp of sequenced clone
CG12880 2003-01-01 Sim4 clustering to Release 3
CG12880 2008-04-29 Release 5.5 accounting
CG12880 2008-08-15 Release 5.9 accounting
CG12880 2008-12-18 5.12 accounting

Clone Sequence Records

LD29228.complete Sequence

1898 bp (1898 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061370

> LD29228.complete
ATTTTATCGTGTGCGGACGTATCTGCGGTCGAATTGCGGAACTTGAAAAT
CCAAATCCGAGTGGCAAAGATACCGAATTTCGAACTGAAAACCGTGCTCG
TAGTTGACGCGAATTTTTAGATGCACTTTCTCAGCATTTGGCGCCACAAG
CAAAAGACTTAGAAACTCTAATTCGATTGCGTTTACTCGAAATCGTTGCT
TGCCACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCATCAACATGCG
TCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTCTACTGCCTCC
TGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGTAGCTCTGGCT
GCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGCACAGGTCGAA
GAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTGACGGCTATCA
AGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAACAAGAAGCTG
CTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACAGCCACAACAG
GAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGCGATGATTCAC
ACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTATGCTGGACCC
GGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTGGCCACAAAGG
TAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCAGCAGCCGCAT
CAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGCGTTGAAAGCT
AACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCCGGCCGGGCCG
CATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTGGCCAAGAAGC
CCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACTGCTGGACATC
CAGGGTGTGCCCACGTGGCGCCAGCCCTGGGAGAACGAGACCGCCGAGAA
GGGCTTCAGTGCCGGCGGCGGGAAGGCCAAGTATCGCAAATCCCTGAAGC
CCAAGTCACCCACATATTATGCACCCGCCCAGGCGGTCAGCAAGCAGAGC
TTCCACAAGTACTTCGCGGGCAATGGCAAGCCCAAGGGATTCTATGTCAT
CAAGGAGCACCAGAAGAAGCCGCAGTTCTACCAGAACATCATCTCGTAAT
CCAACGGCATACCCTCGGTATACCCAGGGAATACCCTTGAAAGACTGCGG
TGCCGGGCGTTCTATTTTCAATATTCTAACGAAGGGGAGCTTCTCCCCTC
TTCCGTCCAGTTTCCACTTGGAATACCCAATCCTGGCGAATCCCGATCAC
ATCTATAGCATCCTGGCCAAATGTTTAACAATTGCGATGGGTGCGTTCTA
TTTTTATATAACGGCAATGAATACAATAACAGGTGGGCTGGTCCAGGTGG
GGTGCATCTCATATCCATCCATGTGGTCAGCCATATCAGCACAAAGAACA
AAGTGTCAAAGTGACATGACTTCATTCGAGATTTCAATGTAAAAACAAAG
AGTTTAAAGTTCAGAAAGGGGTTTTGATTTGAGCACAAACTGAGTTGAAA
CTAATCGGATTATATATTTAATTGAAATTTAATATCTAAAGTTTAATCAG
CTTAGCAGCAGAGTGTGAAATATTCGAGTGGCACTTCTTCATACACATAT
CGTTTTGATCGGAAATCCCAAAATCCTTTTCCTATGAAGGACACCCCATC
CGAAGGACCAGTCCAAACTGCATTTAGCTAAGCAACTGCGGCAAGCAATA
AATTATGGCATAATCAAGCTAGGTTTAAGTGCATGAACGACTTTGTTTTG
ATAAATAAAAATATTGACTGATTTTTAAAAAAAAAAAAAAAAAAAAAA

LD29228.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-RA 1937 CG12880-RA 19..1896 1..1878 9390 100 Plus
CG31055-RB 2004 CG31055-RB 1368..1654 287..1 1435 100 Minus
CG31055-RA 2012 CG31055-RA 1376..1662 287..1 1435 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23514653..23515714 811..1876 5145 99.3 Plus
chr3R 27901430 chr3R 23508897..23509183 1..287 1435 100 Plus
chr3R 27901430 chr3R 23513466..23513789 503..814 1405 96.3 Plus
chr3R 27901430 chr3R 23512701..23512920 286..505 1085 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27691725..27692792 811..1878 5340 100 Plus
3R 32079331 3R 27690550..27690861 503..814 1560 100 Plus
3R 32079331 3R 27685980..27686266 1..287 1435 100 Plus
3R 32079331 3R 27689785..27690004 286..505 1100 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27432556..27433623 811..1878 5340 100 Plus
3R 31820162 3R 27431381..27431692 503..814 1560 100 Plus
3R 31820162 3R 27426811..27427097 1..287 1435 100 Plus
3R 31820162 3R 27430616..27430835 286..505 1100 100 Plus
Blast to na_te.dros performed 2019-03-15 22:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1575 732..790 124 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2476 669..773 117 60.2 Plus

LD29228.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:26:45 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23508897..23509182 1..286 100 -> Plus
chr3R 23512702..23512920 287..505 99 -> Plus
chr3R 23513469..23513787 506..812 96 -> Plus
chr3R 23514655..23515714 813..1876 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:27 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 1..993 207..1199 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:26 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 1..993 207..1199 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:19:49 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 1..993 207..1199 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:26 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 1..993 207..1199 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:32 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 1..993 207..1199 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:32 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 19..1894 1..1876 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:26 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 19..1894 1..1876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:19:49 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 19..1894 1..1876 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:26 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 19..1894 1..1876 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:32 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 19..1894 1..1876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:45 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27685980..27686265 1..286 100 -> Plus
3R 27689786..27690004 287..505 100 -> Plus
3R 27690553..27690859 506..812 100 -> Plus
3R 27691727..27692790 813..1876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:45 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27685980..27686265 1..286 100 -> Plus
3R 27689786..27690004 287..505 100 -> Plus
3R 27690553..27690859 506..812 100 -> Plus
3R 27691727..27692790 813..1876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:45 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27685980..27686265 1..286 100 -> Plus
3R 27689786..27690004 287..505 100 -> Plus
3R 27690553..27690859 506..812 100 -> Plus
3R 27691727..27692790 813..1876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:19:49 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23511702..23511987 1..286 100 -> Plus
arm_3R 23515508..23515726 287..505 100 -> Plus
arm_3R 23516275..23516581 506..812 100 -> Plus
arm_3R 23517449..23518512 813..1876 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:32 Download gff for LD29228.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27426811..27427096 1..286 100 -> Plus
3R 27430617..27430835 287..505 100 -> Plus
3R 27431384..27431690 506..812 100 -> Plus
3R 27432558..27433621 813..1876 100   Plus

LD29228.pep Sequence

Translation from 206 to 1198

> LD29228.pep
MLKVSVGKHKFINMRPSWMGTAAWLLGLYCLLCIAAMVEGASNSVALAAP
TASAAKDVAHMHRSKRLDRRSGAGSSPLTAIKQPKQLARSAHGLNKKLLS
QMGFMKVKAPNSHNRKRLAVESRRHSSRDDSHMFIIKLPPNMHYYAGPGA
KNSIAEQQDKSGHKGNAPSTMASSTPVAAAASAAVATSPVAEASALKANG
KKVSFPFSSNGRPGRIYHWNLPVLKEALAKKPHFAHVSAADRNRLLDIQG
VPTWRQPWENETAEKGFSAGGGKAKYRKSLKPKSPTYYAPAQAVSKQSFH
KYFAGNGKPKGFYVIKEHQKKPQFYQNIIS*

LD29228.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16298-PA 323 GF16298-PA 1..323 14..330 1223 75.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11569-PA 341 GG11569-PA 1..341 1..330 1402 85.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16520-PA 319 GH16520-PA 1..319 47..330 983 62.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-PA 330 CG12880-PA 1..330 1..330 1721 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22021-PA 332 GI22021-PA 4..332 27..330 949 58.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13708-PA 338 GL13708-PA 17..338 28..330 928 67 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11881-PA 336 GA11881-PA 7..336 22..330 955 68.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16351-PA 330 GM16351-PA 1..330 1..330 1566 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21347-PA 271 GD21347-PA 1..146 1..146 719 93.2 Plus
Dsim\GD21347-PA 271 GD21347-PA 150..271 209..330 670 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10470-PA 377 GJ10470-PA 82..377 46..330 1027 67.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11765-PA 273 GK11765-PA 19..273 87..330 862 67 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23754-PA 361 GE23754-PA 1..361 1..330 1422 83.1 Plus

LD29228.hyp Sequence

Translation from 206 to 1198

> LD29228.hyp
MLKVSVGKHKFINMRPSWMGTAAWLLGLYCLLCIAAMVEGASNSVALAAP
TASAAKDVAHMHRSKRLDRRSGAGSSPLTAIKQPKQLARSAHGLNKKLLS
QMGFMKVKAPNSHNRKRLAVESRRHSSRDDSHMFIIKLPPNMHYYAGPGA
KNSIAEQQDKSGHKGNAPSTMASSTPVAAAASAAVATSPVAEASALKANG
KKVSFPFSSNGRPGRIYHWNLPVLKEALAKKPHFAHVSAADRNRLLDIQG
VPTWRQPWENETAEKGFSAGGGKAKYRKSLKPKSPTYYAPAQAVSKQSFH
KYFAGNGKPKGFYVIKEHQKKPQFYQNIIS*

LD29228.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-PA 330 CG12880-PA 1..330 1..330 1721 100 Plus