Clone LD29234 Report

Search the DGRC for LD29234

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:292
Well:34
Vector:pOT2
Associated Gene/TranscriptZip48C-RA
Protein status:LD29234.pep: gold
Preliminary Size:2039
Sequenced Size:1877

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13189 2001-01-01 Release 2 assignment
CG13189 2002-04-04 Blastp of sequenced clone
CG13189 2003-01-01 Sim4 clustering to Release 3
CG13189 2008-04-29 Release 5.5 accounting
CG13189 2008-08-15 Release 5.9 accounting
CG13189 2008-12-18 5.12 accounting

Clone Sequence Records

LD29234.complete Sequence

1877 bp (1877 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095042

> LD29234.complete
CTTTTTGTGGGGCTGTCAGCTCAGTCAGCGGCTCATTCATCACTTTCCGA
CGCGCTCTAGTAGAGCTAGTAGACCTTTTTATCAACCCGTCAGTATTACG
CGTCCCCCCGAAATTGCCCCGCCGCCCGAAACGCAATAGCATTCCGCAAA
AACAATACGATAAGCAGCAACAAGTGTTCCAGAGATTCCCTTGAAACATA
CACAGAATCTAAAACTCCATTGAAATTGGTTCTCAGTTGTTTTGTTTACC
CAGCAATCAGTGCCCAAGAACGTGGCACATTTCCAACTGTGGGCGGGTAA
ACAATTGCTGCGCAACAATTAAGAAAACTTGTTCGCCCTGTCTGTGTACA
CGCGAATAAATCTCGGGAGTACAATTCCATACCAGCCGGTGACGGGCACG
GAAAAGCAGCTCTAACTGTGCAAGATGATTCCAGGCTATGGACCCGTCAC
GCAGGCTCTGCTGGGCACCCTGCTTACCTGGGGACTGACCGCCGCTGGCG
CCGCCCTAGTGATCTTCGTCCGGGGTAACCAGCGGAGGTCTCTGGACGCC
GCCCTGGGATTCGCAGCTGGCGTAATGATAGCAGCCTCCTTTTGGTCACT
CCTCAAGCCGGCCATCGAAATGGCCGAGAGTTCCCATTTGTACGGAGTAT
ACGCCTTTCTGCCCGTCGCTGGAGGCTTCCTCTTGGGATCGATCTTCGTC
TACGGATGCGACAAATTGATGTCATACCTGGGCCTTAACAGCACCAACAT
GATGATCCAGATGACGCAATCAAAAGCCAAGGCGGACATAGCCATCGAGG
ACTCTAAGCGCAATGGAGTTGCCCCCGATAGGTTGGCCTCAAAGAGTCTG
GACAGCTTCTCCGACTGCCTTAGCGTGCAGCACAGCGGCGAATCGAGACG
CCGAAAGAAGGGAGCTAGCATCAACGAGATGGAGCAGTGCACCTACACCA
CGCCTGAGGAGCAGCAGCGCGCCGAGGACGCCCTGTCCCAGTGGAAGAGG
ATTATGCTTTTGGTCGTGGCCATCACGGTCCACAACATTCCAGAAGGGCT
GGCTGTGGGCGTAAGCTTTGGTGCCATTGGCTCCACGAACTCATCGACAT
TTGAGAGCGCCCGCAATTTGGCCATTGGCATTGGCATTCAAAACTTCCCC
GAGGGATTGGCTGTCAGCTTGCCACTGCATGCCGCAGGATTCAGCGTGAA
GCGGGCTCTGTGGTACGGACAGCTGTCCGGAATGGTGGAGCCCATTTTTG
GAGTTCTGGGCGCCGTGGCGGTGACCTTTGCCAACCTGATCCTGCCATAC
GCCTTGTCTTTTGCGGCCGGAGCCATGATATACATTGTGTCGGACGACAT
TCTGCCGGAGGCTCATGCCAGCGGAAATGGAACGATCGCCACGTGGGGCA
CTGTATCCGGCTTCCTGATCATGATGTGTCTGGAGGTGGCGCTGTCGTGA
GGAACGAACGGCTCGCCTTCGCCCGCCTCGCAGATTTCATAATCTAGTGC
TAAACTCAAAGATTCCACTGTACTTAACGCAAAACTCTGCTGTCTTGTAA
ATAGAAGCATGCTGTGTACAAATCTCAGAACCAGCCCTAAACGAGAATCT
AATAATCTAGCGTAGAGTGTAAGTTTTGTAGAAAGAAGCTTGACAACCAG
CGATGCCGCGACGACATCCGTGCAATTGTGTATCTGTGCACACGTATCTG
TACAGCATTCCCAGCGAGTTATGTAAATGAACTGTTCTAGGAAAATTTGT
AAACAAACGTGCATGTGAATTAGGTTTTAAGTTGTCACCGGCGTCCAGTA
GCTTGTGTCTTTTTTAACCGTCTAATGTCTAAGTAATAAACTAAACGAAT
TCAAATGAAAAAAAAAAAAAAAAAAAA

LD29234.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13189-RA 1876 CG13189-RA 20..1876 1..1857 9285 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7786820..7788676 1..1857 9270 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11899538..11901396 1..1859 9295 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11900737..11902595 1..1859 9295 100 Plus
Blast to na_te.dros performed 2019-03-16 10:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 3989..4047 138..199 114 67.7 Plus

LD29234.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:57:21 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7786820..7788676 1..1857 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:28 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13189-RA 1..1026 425..1450 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:16:46 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13189-RA 1..1026 425..1450 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:19:30 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13189-RA 1..1026 425..1450 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:37 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13189-RA 1..1026 425..1450 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:01 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
Zip48C-RA 1..1026 425..1450 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:46:57 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13189-RA 20..1876 1..1857 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:16:46 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13189-RA 20..1876 1..1857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:19:30 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13189-RA 22..1878 1..1857 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:37 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13189-RA 20..1876 1..1857 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:01 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
Zip48C-RA 22..1878 1..1857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:21 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11899538..11901394 1..1857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:21 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11899538..11901394 1..1857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:21 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11899538..11901394 1..1857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:19:30 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7787043..7788899 1..1857 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:30:09 Download gff for LD29234.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11900737..11902593 1..1857 100   Plus

LD29234.pep Sequence

Translation from 424 to 1449

> LD29234.pep
MIPGYGPVTQALLGTLLTWGLTAAGAALVIFVRGNQRRSLDAALGFAAGV
MIAASFWSLLKPAIEMAESSHLYGVYAFLPVAGGFLLGSIFVYGCDKLMS
YLGLNSTNMMIQMTQSKAKADIAIEDSKRNGVAPDRLASKSLDSFSDCLS
VQHSGESRRRKKGASINEMEQCTYTTPEEQQRAEDALSQWKRIMLLVVAI
TVHNIPEGLAVGVSFGAIGSTNSSTFESARNLAIGIGIQNFPEGLAVSLP
LHAAGFSVKRALWYGQLSGMVEPIFGVLGAVAVTFANLILPYALSFAAGA
MIYIVSDDILPEAHASGNGTIATWGTVSGFLIMMCLEVALS*

LD29234.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13106-PA 339 GF13106-PA 1..339 1..341 1603 94.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20230-PA 341 GG20230-PA 1..341 1..341 1763 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21479-PA 342 GH21479-PA 1..342 1..341 1517 89.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Zip48C-PA 341 CG13189-PA 1..341 1..341 1719 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19957-PA 344 GI19957-PA 1..344 1..341 1565 91.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10093-PA 340 GL10093-PA 1..340 1..341 1581 93.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12104-PA 340 GA12104-PA 1..340 1..341 1581 93.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21317-PA 341 GM21317-PA 1..341 1..341 1775 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10823-PA 341 GD10823-PA 1..341 1..341 1775 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17898-PA 343 GJ17898-PA 1..343 1..341 1564 92.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22049-PA 342 GK22049-PA 1..342 1..341 1497 88.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12390-PA 341 GE12390-PA 1..341 1..341 1773 99.1 Plus

LD29234.hyp Sequence

Translation from 424 to 1449

> LD29234.hyp
MIPGYGPVTQALLGTLLTWGLTAAGAALVIFVRGNQRRSLDAALGFAAGV
MIAASFWSLLKPAIEMAESSHLYGVYAFLPVAGGFLLGSIFVYGCDKLMS
YLGLNSTNMMIQMTQSKAKADIAIEDSKRNGVAPDRLASKSLDSFSDCLS
VQHSGESRRRKKGASINEMEQCTYTTPEEQQRAEDALSQWKRIMLLVVAI
TVHNIPEGLAVGVSFGAIGSTNSSTFESARNLAIGIGIQNFPEGLAVSLP
LHAAGFSVKRALWYGQLSGMVEPIFGVLGAVAVTFANLILPYALSFAAGA
MIYIVSDDILPEAHASGNGTIATWGTVSGFLIMMCLEVALS*

LD29234.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Zip48C-PA 341 CG13189-PA 1..341 1..341 1719 100 Plus