BDGP Sequence Production Resources |
Search the DGRC for LD29238
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 292 |
Well: | 38 |
Vector: | pOT2 |
Associated Gene/Transcript | d4-RA |
Protein status: | LD29238.pep: gold |
Preliminary Size: | 1986 |
Sequenced Size: | 1766 |
Gene | Date | Evidence |
---|---|---|
CG2682 | 2001-01-01 | Release 2 assignment |
CG2682 | 2001-09-19 | Blastp of sequenced clone |
CG2682 | 2003-01-01 | Sim4 clustering to Release 3 |
d4 | 2008-04-29 | Release 5.5 accounting |
d4 | 2008-08-15 | Release 5.9 accounting |
d4 | 2008-12-18 | 5.12 accounting |
1766 bp assembled on 2006-11-09
GenBank Submission: AY058600
> LD29238.complete TAATTTTGTACTTCTTGCCTAGTGCCCCATAACAATTCTATATTTTGTTA TTTGTATCAGCTTGAATTGTGTGTGAAGAAACATAAATTTTATCAATGAC AAAAAAATATGTTGACAATTTAGCTCTTTAGTTTAGCTATTGCTTAACCA AATAATTCCTGCGGCTACCACTCGGCATCAACATGGCTTCCAAATCTGCG TACGAAAAAACTTTGGTAGTAAACATTGCCAATTTTGAAAAAATTCAGAA CTTTTTAAATGACAAGGAAAAGTACAAGGAGATTCTAGAAAACAGCGAGA ATTTCAACACTCGTCTATGCATTGAACGTCGACTTCGCATGCCATTCCTC GATCCCCAGACAGGTGTCGCACAGACACATTGCTCCCTCTTTATGAAAAA AAAACAGCGAATGCCAGGTCTTCGACATGGTCAGATATACACTTATCCAT CGTCTCGGTGGCGCAAACCAAAACGTCAGTACTTACTTAACCCGAATCAA AGTTTCCGAGCCTATCAGTATCGCGAGCACAACCTTCAGCACTCCCACCA TCAAACGCATCAGCATCACCATCATATACCTTCGTCTGGCGTTGCTGTAC CACAAAATCCTCACTTAGCTGAAAGCGCAGCCATTGCTGCTACGGATGGC AACTCCATGGGAGCATCAGGAGATAATGATAGTAAGGACTCACATGCAAA CGTCGAAAAAGAATGGTTCCACGATGAAATGGACACATCACATTTTCATC ATGGCGATGAATTTGAGGATGACTTTGATTCAGATAACGATTTTGATGAG TCTTACACCAGCCGGGGCAAACGCAAAAAGTGTTCGCGTCCTAGACGAAC AAATGCAAACGTAGAGGGTACTCCCAAACGGGGACGTAAAGGTGGTGGCA ATCGTCGAAAGAACGCCGTTGAGGGAGAATCTGATCGAAAACGTAGAGCC GGTGGAAATAGTGCAAATACATCCGCAGCCGCAGCGGCAGCTGCCGCCGC TGTCGCACATGCAGCATGTACTGCAGCTGCTGTCGCTAGCACTGGGCTCT ATGCATCTCATTCCAACTCAGCTTCGCCTATTCCCATAAATGACGACAAT TCACAGTCAGGACTCATACTGCCAACAAACATATCGTCGTCGTACGATAA GACTTCAAGCGATGCTGGAGCTTCCAATGACTCAATTCCCCTAGCAACAA TGGTTGCCATAAACGCGGGCCTGACAACCTCAAATGTTTGCAATGCGCAT CCGGTGCAAACAGGAACAAATCAAACGGTGTTTGCTACTGGTAATAAGGT CAAACAACGTGTAGAACGTGACATAGCGCAACCATCACCTTATTGTGACT TTTGTCTGGGAGATCAACGAGAAAATAAAAAAACCAATATGCCCGAAGAG CTAGTATCGTGCTCGGACTGTGGTCGTTCCGGTCATCCATCGTGTCTGCA GTTCACGGCAAATATGATTATATCGGTAAAACGTTATCGTTGGCAATGCA TTGAATGCAAGTACTGCTCCATCTGTGGGACCTCTGATAATGACGATCAA CTTTTATTTTGTGACGATTGTGACCGGGGATACCATATGTACTGCCTGTC ACCACCGCTTGTGACTCCACCAGAGGGTTCTTGGAGCTGCAAGCTATGCA TGGAGGAGTTCCACAAGATTAAATAAGCTAATAAGCTACATTAATAATTC ACCAATTATAAGTTAATCTTCTCATAAATATAAAAAACGTACATTTTAAA AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 1182581..1183431 | 897..1747 | 4225 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 1181547..1182176 | 1..630 | 3135 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 1182260..1182530 | 628..898 | 1355 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 1770..1821 | 1686..1738 | 118 | 71.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 1181547..1182176 | 1..630 | 99 | -> | Plus |
chr2R | 1182263..1182529 | 631..897 | 100 | -> | Plus |
chr2R | 1182582..1183431 | 898..1747 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
d4-RA | 1..1494 | 183..1676 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
d4-RA | 1..1494 | 183..1676 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
d4-RA | 1..1494 | 183..1676 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
d4-RA | 1..1494 | 183..1676 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
d4-RA | 1..1494 | 183..1676 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
d4-RA | 1..1747 | 1..1747 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
d4-RA | 1..1747 | 1..1747 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
d4-RA | 21..1767 | 1..1747 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
d4-RA | 1..1747 | 1..1747 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
d4-RA | 21..1767 | 1..1747 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5295116..5295965 | 898..1747 | 100 | Plus | |
2R | 5294083..5294712 | 1..630 | 100 | -> | Plus |
2R | 5294797..5295063 | 631..897 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5295116..5295965 | 898..1747 | 100 | Plus | |
2R | 5294083..5294712 | 1..630 | 100 | -> | Plus |
2R | 5294797..5295063 | 631..897 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5295116..5295965 | 898..1747 | 100 | Plus | |
2R | 5294083..5294712 | 1..630 | 100 | -> | Plus |
2R | 5294797..5295063 | 631..897 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 1181588..1182217 | 1..630 | 100 | -> | Plus |
arm_2R | 1182302..1182568 | 631..897 | 100 | -> | Plus |
arm_2R | 1182621..1183470 | 898..1747 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5295282..5295911 | 1..630 | 100 | -> | Plus |
2R | 5295996..5296262 | 631..897 | 100 | -> | Plus |
2R | 5296315..5297164 | 898..1747 | 100 | Plus |
Translation from 182 to 1675
> LD29238.pep MASKSAYEKTLVVNIANFEKIQNFLNDKEKYKEILENSENFNTRLCIERR LRMPFLDPQTGVAQTHCSLFMKKKQRMPGLRHGQIYTYPSSRWRKPKRQY LLNPNQSFRAYQYREHNLQHSHHQTHQHHHHIPSSGVAVPQNPHLAESAA IAATDGNSMGASGDNDSKDSHANVEKEWFHDEMDTSHFHHGDEFEDDFDS DNDFDESYTSRGKRKKCSRPRRTNANVEGTPKRGRKGGGNRRKNAVEGES DRKRRAGGNSANTSAAAAAAAAAVAHAACTAAAVASTGLYASHSNSASPI PINDDNSQSGLILPTNISSSYDKTSSDAGASNDSIPLATMVAINAGLTTS NVCNAHPVQTGTNQTVFATGNKVKQRVERDIAQPSPYCDFCLGDQRENKK TNMPEELVSCSDCGRSGHPSCLQFTANMIISVKRYRWQCIECKYCSICGT SDNDDQLLFCDDCDRGYHMYCLSPPLVTPPEGSWSCKLCMEEFHKIK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11022-PA | 812 | GF11022-PA | 1..482 | 1..481 | 1719 | 76.8 | Plus |
Dana\GF21813-PA | 441 | GF21813-PA | 10..260 | 12..205 | 374 | 36.8 | Plus |
Dana\GF20276-PA | 2062 | GF20276-PA | 1732..1830 | 388..489 | 263 | 44.1 | Plus |
Dana\GF12873-PA | 1486 | GF12873-PA | 545..625 | 407..489 | 207 | 39.8 | Plus |
Dana\GF12391-PA | 3047 | GF12391-PA | 2483..2587 | 382..490 | 173 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10866-PA | 497 | GG10866-PA | 1..497 | 1..497 | 2208 | 95.8 | Plus |
Dere\GG19497-PA | 430 | GG19497-PA | 9..254 | 12..205 | 357 | 36.7 | Plus |
Dere\GG18040-PA | 1982 | GG18040-PA | 1683..1781 | 388..489 | 259 | 43.1 | Plus |
Dere\GG22900-PA | 1481 | GG22900-PA | 545..625 | 407..489 | 208 | 39.8 | Plus |
Dere\GG10942-PA | 2287 | GG10942-PA | 239..289 | 441..491 | 154 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21439-PA | 504 | GH21439-PA | 7..504 | 12..497 | 1686 | 74.1 | Plus |
Dgri\GH17804-PA | 423 | GH17804-PA | 9..97 | 12..101 | 353 | 66.7 | Plus |
Dgri\GH24152-PA | 2464 | GH24152-PA | 2053..2164 | 375..489 | 275 | 43.5 | Plus |
Dgri\GH21693-PA | 1461 | GH21693-PA | 549..630 | 406..489 | 204 | 39.3 | Plus |
Dgri\GH20497-PA | 3415 | GH20497-PA | 2868..2922 | 442..490 | 154 | 43.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
d4-PA | 497 | CG2682-PA | 1..497 | 1..497 | 2687 | 100 | Plus |
d4-PD | 496 | CG2682-PD | 1..496 | 1..497 | 2669 | 99.8 | Plus |
d4-PC | 495 | CG2682-PC | 1..495 | 1..497 | 2662 | 99.6 | Plus |
d4-PB | 339 | CG2682-PB | 1..339 | 159..497 | 1836 | 100 | Plus |
tth-PC | 428 | CG12175-PC | 9..317 | 12..275 | 398 | 34.9 | Plus |
tth-PB | 428 | CG12175-PB | 9..317 | 12..275 | 398 | 34.9 | Plus |
e(y)3-PE | 2006 | CG12238-PE | 1633..1793 | 315..489 | 263 | 32 | Plus |
e(y)3-PB | 2006 | CG12238-PB | 1633..1793 | 315..489 | 263 | 32 | Plus |
e(y)3-PA | 2006 | CG12238-PA | 1633..1793 | 315..489 | 263 | 32 | Plus |
e(y)3-PD | 2011 | CG12238-PD | 1638..1798 | 315..489 | 263 | 32 | Plus |
e(y)3-PC | 2012 | CG12238-PC | 1639..1799 | 315..489 | 263 | 32 | Plus |
Lpt-PB | 1478 | CG5591-PB | 545..625 | 407..489 | 216 | 39.8 | Plus |
Lpt-PA | 1482 | CG5591-PA | 545..625 | 407..489 | 216 | 39.8 | Plus |
tou-PA | 2999 | CG10897-PA | 2400..2556 | 316..492 | 175 | 28.1 | Plus |
tou-PA | 2999 | CG10897-PA | 2383..2610 | 245..490 | 164 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20660-PA | 492 | GI20660-PA | 1..492 | 1..497 | 1634 | 72.1 | Plus |
Dmoj\GI15144-PA | 409 | GI15144-PA | 9..116 | 12..116 | 360 | 59.1 | Plus |
Dmoj\GI21713-PA | 2287 | GI21713-PA | 1943..2055 | 373..489 | 273 | 43.6 | Plus |
Dmoj\GI18846-PA | 1465 | GI18846-PA | 548..628 | 407..489 | 209 | 40.4 | Plus |
Dmoj\GI21040-PA | 2976 | GI21040-PA | 2561..2665 | 382..490 | 170 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11042-PA | 567 | GL11042-PA | 61..567 | 1..497 | 1780 | 81.4 | Plus |
Dper\GL22648-PA | 433 | GL22648-PA | 9..247 | 12..205 | 386 | 37.9 | Plus |
Dper\GL27102-PA | 2142 | GL27102-PA | 1819..1917 | 388..489 | 249 | 42.2 | Plus |
Dper\GL11176-PA | 1486 | GL11176-PA | 545..625 | 407..489 | 201 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15428-PA | 507 | GA15428-PA | 1..507 | 1..497 | 1785 | 81.4 | Plus |
Dpse\GA11454-PA | 433 | GA11454-PA | 9..247 | 12..205 | 387 | 37.9 | Plus |
Dpse\GA22685-PA | 2132 | GA22685-PA | 1809..1907 | 388..489 | 250 | 42.2 | Plus |
Dpse\GA18992-PA | 1486 | GA18992-PA | 545..625 | 407..489 | 200 | 38.6 | Plus |
Dpse\GA10623-PA | 3214 | GA10623-PA | 2663..2765 | 384..490 | 168 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11099-PA | 182 | GM11099-PA | 1..173 | 77..249 | 941 | 98.3 | Plus |
Dsec\GM11100-PA | 95 | GM11100-PA | 1..95 | 403..497 | 539 | 100 | Plus |
Dsec\GM17603-PA | 428 | GM17603-PA | 9..252 | 12..205 | 354 | 36.4 | Plus |
Dsec\GM22724-PA | 1889 | GM22724-PA | 1568..1666 | 388..489 | 268 | 45.1 | Plus |
Dsec\GM16061-PA | 1476 | GM16061-PA | 539..619 | 407..489 | 208 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15571-PA | 770 | GD15571-PA | 460..558 | 388..489 | 256 | 44.1 | Plus |
Dsim\GD25895-PA | 2944 | GD25895-PA | 2370..2499 | 345..490 | 164 | 27.9 | Plus |
Dsim\GD19604-PA | 2135 | GD19604-PA | 243..293 | 441..491 | 158 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20409-PA | 490 | GJ20409-PA | 7..490 | 12..497 | 1685 | 76.9 | Plus |
Dvir\GJ19004-PA | 404 | GJ19004-PA | 9..257 | 12..208 | 377 | 36.4 | Plus |
Dvir\GJ15575-PA | 2162 | GJ15575-PA | 1883..1994 | 374..489 | 278 | 44 | Plus |
Dvir\GJ21880-PA | 1458 | GJ21880-PA | 547..627 | 407..489 | 209 | 41 | Plus |
Dvir\GJ21968-PA | 3086 | GJ21968-PA | 2526..2630 | 382..490 | 167 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10624-PA | 515 | GK10624-PA | 1..515 | 1..497 | 1732 | 74.2 | Plus |
Dwil\GK25862-PA | 467 | GK25862-PA | 1..254 | 1..208 | 383 | 36.5 | Plus |
Dwil\GK25190-PA | 2262 | GK25190-PA | 1869..1963 | 388..485 | 257 | 43.9 | Plus |
Dwil\GK15714-PA | 1503 | GK15714-PA | 547..627 | 407..489 | 213 | 39.8 | Plus |
Dwil\GK22224-PA | 3148 | GK22224-PA | 2600..2702 | 384..490 | 166 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11247-PA | 497 | GE11247-PA | 1..497 | 1..497 | 2224 | 95.8 | Plus |
Dyak\GE16149-PA | 430 | GE16149-PA | 9..254 | 12..205 | 362 | 37.1 | Plus |
Dyak\GE17369-PA | 2002 | GE17369-PA | 1696..1794 | 388..489 | 260 | 43.1 | Plus |
Dyak\GE14338-PA | 1481 | GE14338-PA | 545..625 | 407..489 | 208 | 39.8 | Plus |
Translation from 182 to 1675
> LD29238.hyp MASKSAYEKTLVVNIANFEKIQNFLNDKEKYKEILENSENFNTRLCIERR LRMPFLDPQTGVAQTHCSLFMKKKQRMPGLRHGQIYTYPSSRWRKPKRQY LLNPNQSFRAYQYREHNLQHSHHQTHQHHHHIPSSGVAVPQNPHLAESAA IAATDGNSMGASGDNDSKDSHANVEKEWFHDEMDTSHFHHGDEFEDDFDS DNDFDESYTSRGKRKKCSRPRRTNANVEGTPKRGRKGGGNRRKNAVEGES DRKRRAGGNSANTSAAAAAAAAAVAHAACTAAAVASTGLYASHSNSASPI PINDDNSQSGLILPTNISSSYDKTSSDAGASNDSIPLATMVAINAGLTTS NVCNAHPVQTGTNQTVFATGNKVKQRVERDIAQPSPYCDFCLGDQRENKK TNMPEELVSCSDCGRSGHPSCLQFTANMIISVKRYRWQCIECKYCSICGT SDNDDQLLFCDDCDRGYHMYCLSPPLVTPPEGSWSCKLCMEEFHKIK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
d4-PA | 497 | CG2682-PA | 1..497 | 1..497 | 2687 | 100 | Plus |
d4-PD | 496 | CG2682-PD | 1..496 | 1..497 | 2669 | 99.8 | Plus |
d4-PC | 495 | CG2682-PC | 1..495 | 1..497 | 2662 | 99.6 | Plus |
d4-PB | 339 | CG2682-PB | 1..339 | 159..497 | 1836 | 100 | Plus |
tth-PC | 428 | CG12175-PC | 9..317 | 12..275 | 398 | 34.9 | Plus |