Clone LD29238 Report

Search the DGRC for LD29238

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:292
Well:38
Vector:pOT2
Associated Gene/Transcriptd4-RA
Protein status:LD29238.pep: gold
Preliminary Size:1986
Sequenced Size:1766

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2682 2001-01-01 Release 2 assignment
CG2682 2001-09-19 Blastp of sequenced clone
CG2682 2003-01-01 Sim4 clustering to Release 3
d4 2008-04-29 Release 5.5 accounting
d4 2008-08-15 Release 5.9 accounting
d4 2008-12-18 5.12 accounting

Clone Sequence Records

LD29238.complete Sequence

1766 bp assembled on 2006-11-09

GenBank Submission: AY058600

> LD29238.complete
TAATTTTGTACTTCTTGCCTAGTGCCCCATAACAATTCTATATTTTGTTA
TTTGTATCAGCTTGAATTGTGTGTGAAGAAACATAAATTTTATCAATGAC
AAAAAAATATGTTGACAATTTAGCTCTTTAGTTTAGCTATTGCTTAACCA
AATAATTCCTGCGGCTACCACTCGGCATCAACATGGCTTCCAAATCTGCG
TACGAAAAAACTTTGGTAGTAAACATTGCCAATTTTGAAAAAATTCAGAA
CTTTTTAAATGACAAGGAAAAGTACAAGGAGATTCTAGAAAACAGCGAGA
ATTTCAACACTCGTCTATGCATTGAACGTCGACTTCGCATGCCATTCCTC
GATCCCCAGACAGGTGTCGCACAGACACATTGCTCCCTCTTTATGAAAAA
AAAACAGCGAATGCCAGGTCTTCGACATGGTCAGATATACACTTATCCAT
CGTCTCGGTGGCGCAAACCAAAACGTCAGTACTTACTTAACCCGAATCAA
AGTTTCCGAGCCTATCAGTATCGCGAGCACAACCTTCAGCACTCCCACCA
TCAAACGCATCAGCATCACCATCATATACCTTCGTCTGGCGTTGCTGTAC
CACAAAATCCTCACTTAGCTGAAAGCGCAGCCATTGCTGCTACGGATGGC
AACTCCATGGGAGCATCAGGAGATAATGATAGTAAGGACTCACATGCAAA
CGTCGAAAAAGAATGGTTCCACGATGAAATGGACACATCACATTTTCATC
ATGGCGATGAATTTGAGGATGACTTTGATTCAGATAACGATTTTGATGAG
TCTTACACCAGCCGGGGCAAACGCAAAAAGTGTTCGCGTCCTAGACGAAC
AAATGCAAACGTAGAGGGTACTCCCAAACGGGGACGTAAAGGTGGTGGCA
ATCGTCGAAAGAACGCCGTTGAGGGAGAATCTGATCGAAAACGTAGAGCC
GGTGGAAATAGTGCAAATACATCCGCAGCCGCAGCGGCAGCTGCCGCCGC
TGTCGCACATGCAGCATGTACTGCAGCTGCTGTCGCTAGCACTGGGCTCT
ATGCATCTCATTCCAACTCAGCTTCGCCTATTCCCATAAATGACGACAAT
TCACAGTCAGGACTCATACTGCCAACAAACATATCGTCGTCGTACGATAA
GACTTCAAGCGATGCTGGAGCTTCCAATGACTCAATTCCCCTAGCAACAA
TGGTTGCCATAAACGCGGGCCTGACAACCTCAAATGTTTGCAATGCGCAT
CCGGTGCAAACAGGAACAAATCAAACGGTGTTTGCTACTGGTAATAAGGT
CAAACAACGTGTAGAACGTGACATAGCGCAACCATCACCTTATTGTGACT
TTTGTCTGGGAGATCAACGAGAAAATAAAAAAACCAATATGCCCGAAGAG
CTAGTATCGTGCTCGGACTGTGGTCGTTCCGGTCATCCATCGTGTCTGCA
GTTCACGGCAAATATGATTATATCGGTAAAACGTTATCGTTGGCAATGCA
TTGAATGCAAGTACTGCTCCATCTGTGGGACCTCTGATAATGACGATCAA
CTTTTATTTTGTGACGATTGTGACCGGGGATACCATATGTACTGCCTGTC
ACCACCGCTTGTGACTCCACCAGAGGGTTCTTGGAGCTGCAAGCTATGCA
TGGAGGAGTTCCACAAGATTAAATAAGCTAATAAGCTACATTAATAATTC
ACCAATTATAAGTTAATCTTCTCATAAATATAAAAAACGTACATTTTAAA
AAAAAAAAAAAAAAAA

LD29238.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
d4-RA 1928 d4-RA 50..1797 1..1748 8740 100 Plus
d4.h 1749 d4.h 1..1745 1..1748 8670 99.8 Plus
d4.e 1755 d4.e 1..1751 2..1748 8670 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1182581..1183431 897..1747 4225 99.8 Plus
chr2R 21145070 chr2R 1181547..1182176 1..630 3135 99.8 Plus
chr2R 21145070 chr2R 1182260..1182530 628..898 1355 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5295115..5295966 897..1748 4260 100 Plus
2R 25286936 2R 5294083..5294712 1..630 3150 100 Plus
2R 25286936 2R 5294794..5295064 628..898 1355 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5296314..5297165 897..1748 4260 100 Plus
2R 25260384 2R 5295282..5295911 1..630 3150 100 Plus
2R 25260384 2R 5295993..5296263 628..898 1355 100 Plus
Blast to na_te.dros performed 2019-03-16 11:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 1770..1821 1686..1738 118 71.7 Plus

LD29238.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:10:13 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1181547..1182176 1..630 99 -> Plus
chr2R 1182263..1182529 631..897 100 -> Plus
chr2R 1182582..1183431 898..1747 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:29 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
d4-RA 1..1494 183..1676 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:19:26 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
d4-RA 1..1494 183..1676 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:17 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
d4-RA 1..1494 183..1676 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:35:09 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
d4-RA 1..1494 183..1676 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:44 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
d4-RA 1..1494 183..1676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:47:47 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
d4-RA 1..1747 1..1747 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:19:25 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
d4-RA 1..1747 1..1747 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:17 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
d4-RA 21..1767 1..1747 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:35:09 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
d4-RA 1..1747 1..1747 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:44 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
d4-RA 21..1767 1..1747 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:13 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5295116..5295965 898..1747 100   Plus
2R 5294083..5294712 1..630 100 -> Plus
2R 5294797..5295063 631..897 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:13 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5295116..5295965 898..1747 100   Plus
2R 5294083..5294712 1..630 100 -> Plus
2R 5294797..5295063 631..897 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:13 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5295116..5295965 898..1747 100   Plus
2R 5294083..5294712 1..630 100 -> Plus
2R 5294797..5295063 631..897 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:17 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1181588..1182217 1..630 100 -> Plus
arm_2R 1182302..1182568 631..897 100 -> Plus
arm_2R 1182621..1183470 898..1747 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:48:47 Download gff for LD29238.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5295282..5295911 1..630 100 -> Plus
2R 5295996..5296262 631..897 100 -> Plus
2R 5296315..5297164 898..1747 100   Plus

LD29238.pep Sequence

Translation from 182 to 1675

> LD29238.pep
MASKSAYEKTLVVNIANFEKIQNFLNDKEKYKEILENSENFNTRLCIERR
LRMPFLDPQTGVAQTHCSLFMKKKQRMPGLRHGQIYTYPSSRWRKPKRQY
LLNPNQSFRAYQYREHNLQHSHHQTHQHHHHIPSSGVAVPQNPHLAESAA
IAATDGNSMGASGDNDSKDSHANVEKEWFHDEMDTSHFHHGDEFEDDFDS
DNDFDESYTSRGKRKKCSRPRRTNANVEGTPKRGRKGGGNRRKNAVEGES
DRKRRAGGNSANTSAAAAAAAAAVAHAACTAAAVASTGLYASHSNSASPI
PINDDNSQSGLILPTNISSSYDKTSSDAGASNDSIPLATMVAINAGLTTS
NVCNAHPVQTGTNQTVFATGNKVKQRVERDIAQPSPYCDFCLGDQRENKK
TNMPEELVSCSDCGRSGHPSCLQFTANMIISVKRYRWQCIECKYCSICGT
SDNDDQLLFCDDCDRGYHMYCLSPPLVTPPEGSWSCKLCMEEFHKIK*

LD29238.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11022-PA 812 GF11022-PA 1..482 1..481 1719 76.8 Plus
Dana\GF21813-PA 441 GF21813-PA 10..260 12..205 374 36.8 Plus
Dana\GF20276-PA 2062 GF20276-PA 1732..1830 388..489 263 44.1 Plus
Dana\GF12873-PA 1486 GF12873-PA 545..625 407..489 207 39.8 Plus
Dana\GF12391-PA 3047 GF12391-PA 2483..2587 382..490 173 32.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10866-PA 497 GG10866-PA 1..497 1..497 2208 95.8 Plus
Dere\GG19497-PA 430 GG19497-PA 9..254 12..205 357 36.7 Plus
Dere\GG18040-PA 1982 GG18040-PA 1683..1781 388..489 259 43.1 Plus
Dere\GG22900-PA 1481 GG22900-PA 545..625 407..489 208 39.8 Plus
Dere\GG10942-PA 2287 GG10942-PA 239..289 441..491 154 47.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21439-PA 504 GH21439-PA 7..504 12..497 1686 74.1 Plus
Dgri\GH17804-PA 423 GH17804-PA 9..97 12..101 353 66.7 Plus
Dgri\GH24152-PA 2464 GH24152-PA 2053..2164 375..489 275 43.5 Plus
Dgri\GH21693-PA 1461 GH21693-PA 549..630 406..489 204 39.3 Plus
Dgri\GH20497-PA 3415 GH20497-PA 2868..2922 442..490 154 43.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
d4-PA 497 CG2682-PA 1..497 1..497 2687 100 Plus
d4-PD 496 CG2682-PD 1..496 1..497 2669 99.8 Plus
d4-PC 495 CG2682-PC 1..495 1..497 2662 99.6 Plus
d4-PB 339 CG2682-PB 1..339 159..497 1836 100 Plus
tth-PC 428 CG12175-PC 9..317 12..275 398 34.9 Plus
tth-PB 428 CG12175-PB 9..317 12..275 398 34.9 Plus
e(y)3-PE 2006 CG12238-PE 1633..1793 315..489 263 32 Plus
e(y)3-PB 2006 CG12238-PB 1633..1793 315..489 263 32 Plus
e(y)3-PA 2006 CG12238-PA 1633..1793 315..489 263 32 Plus
e(y)3-PD 2011 CG12238-PD 1638..1798 315..489 263 32 Plus
e(y)3-PC 2012 CG12238-PC 1639..1799 315..489 263 32 Plus
Lpt-PB 1478 CG5591-PB 545..625 407..489 216 39.8 Plus
Lpt-PA 1482 CG5591-PA 545..625 407..489 216 39.8 Plus
tou-PA 2999 CG10897-PA 2400..2556 316..492 175 28.1 Plus
tou-PA 2999 CG10897-PA 2383..2610 245..490 164 24.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20660-PA 492 GI20660-PA 1..492 1..497 1634 72.1 Plus
Dmoj\GI15144-PA 409 GI15144-PA 9..116 12..116 360 59.1 Plus
Dmoj\GI21713-PA 2287 GI21713-PA 1943..2055 373..489 273 43.6 Plus
Dmoj\GI18846-PA 1465 GI18846-PA 548..628 407..489 209 40.4 Plus
Dmoj\GI21040-PA 2976 GI21040-PA 2561..2665 382..490 170 31.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11042-PA 567 GL11042-PA 61..567 1..497 1780 81.4 Plus
Dper\GL22648-PA 433 GL22648-PA 9..247 12..205 386 37.9 Plus
Dper\GL27102-PA 2142 GL27102-PA 1819..1917 388..489 249 42.2 Plus
Dper\GL11176-PA 1486 GL11176-PA 545..625 407..489 201 38.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15428-PA 507 GA15428-PA 1..507 1..497 1785 81.4 Plus
Dpse\GA11454-PA 433 GA11454-PA 9..247 12..205 387 37.9 Plus
Dpse\GA22685-PA 2132 GA22685-PA 1809..1907 388..489 250 42.2 Plus
Dpse\GA18992-PA 1486 GA18992-PA 545..625 407..489 200 38.6 Plus
Dpse\GA10623-PA 3214 GA10623-PA 2663..2765 384..490 168 32.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11099-PA 182 GM11099-PA 1..173 77..249 941 98.3 Plus
Dsec\GM11100-PA 95 GM11100-PA 1..95 403..497 539 100 Plus
Dsec\GM17603-PA 428 GM17603-PA 9..252 12..205 354 36.4 Plus
Dsec\GM22724-PA 1889 GM22724-PA 1568..1666 388..489 268 45.1 Plus
Dsec\GM16061-PA 1476 GM16061-PA 539..619 407..489 208 39.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15571-PA 770 GD15571-PA 460..558 388..489 256 44.1 Plus
Dsim\GD25895-PA 2944 GD25895-PA 2370..2499 345..490 164 27.9 Plus
Dsim\GD19604-PA 2135 GD19604-PA 243..293 441..491 158 49 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20409-PA 490 GJ20409-PA 7..490 12..497 1685 76.9 Plus
Dvir\GJ19004-PA 404 GJ19004-PA 9..257 12..208 377 36.4 Plus
Dvir\GJ15575-PA 2162 GJ15575-PA 1883..1994 374..489 278 44 Plus
Dvir\GJ21880-PA 1458 GJ21880-PA 547..627 407..489 209 41 Plus
Dvir\GJ21968-PA 3086 GJ21968-PA 2526..2630 382..490 167 31.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10624-PA 515 GK10624-PA 1..515 1..497 1732 74.2 Plus
Dwil\GK25862-PA 467 GK25862-PA 1..254 1..208 383 36.5 Plus
Dwil\GK25190-PA 2262 GK25190-PA 1869..1963 388..485 257 43.9 Plus
Dwil\GK15714-PA 1503 GK15714-PA 547..627 407..489 213 39.8 Plus
Dwil\GK22224-PA 3148 GK22224-PA 2600..2702 384..490 166 31.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11247-PA 497 GE11247-PA 1..497 1..497 2224 95.8 Plus
Dyak\GE16149-PA 430 GE16149-PA 9..254 12..205 362 37.1 Plus
Dyak\GE17369-PA 2002 GE17369-PA 1696..1794 388..489 260 43.1 Plus
Dyak\GE14338-PA 1481 GE14338-PA 545..625 407..489 208 39.8 Plus

LD29238.hyp Sequence

Translation from 182 to 1675

> LD29238.hyp
MASKSAYEKTLVVNIANFEKIQNFLNDKEKYKEILENSENFNTRLCIERR
LRMPFLDPQTGVAQTHCSLFMKKKQRMPGLRHGQIYTYPSSRWRKPKRQY
LLNPNQSFRAYQYREHNLQHSHHQTHQHHHHIPSSGVAVPQNPHLAESAA
IAATDGNSMGASGDNDSKDSHANVEKEWFHDEMDTSHFHHGDEFEDDFDS
DNDFDESYTSRGKRKKCSRPRRTNANVEGTPKRGRKGGGNRRKNAVEGES
DRKRRAGGNSANTSAAAAAAAAAVAHAACTAAAVASTGLYASHSNSASPI
PINDDNSQSGLILPTNISSSYDKTSSDAGASNDSIPLATMVAINAGLTTS
NVCNAHPVQTGTNQTVFATGNKVKQRVERDIAQPSPYCDFCLGDQRENKK
TNMPEELVSCSDCGRSGHPSCLQFTANMIISVKRYRWQCIECKYCSICGT
SDNDDQLLFCDDCDRGYHMYCLSPPLVTPPEGSWSCKLCMEEFHKIK*

LD29238.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
d4-PA 497 CG2682-PA 1..497 1..497 2687 100 Plus
d4-PD 496 CG2682-PD 1..496 1..497 2669 99.8 Plus
d4-PC 495 CG2682-PC 1..495 1..497 2662 99.6 Plus
d4-PB 339 CG2682-PB 1..339 159..497 1836 100 Plus
tth-PC 428 CG12175-PC 9..317 12..275 398 34.9 Plus