BDGP Sequence Production Resources |
Search the DGRC for LD29280
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 292 |
Well: | 80 |
Vector: | pOT2 |
Associated Gene/Transcript | ND42-RA |
Protein status: | LD29280.pep: gold |
Preliminary Size: | 1561 |
Sequenced Size: | 1379 |
Gene | Date | Evidence |
---|---|---|
CG6343 | 2001-01-01 | Release 2 assignment |
CG6343 | 2001-07-04 | Blastp of sequenced clone |
CG6343 | 2003-01-01 | Sim4 clustering to Release 3 |
ND42 | 2008-04-29 | Release 5.5 accounting |
ND42 | 2008-08-15 | Release 5.9 accounting |
ND42 | 2008-12-18 | 5.12 accounting |
1379 bp (1379 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051764
> LD29280.complete CAACCATAGCCCGAAATTTGTTTTTGGGTAGACTTCCGATATTTAGATTG AAAAAATGACCGCCGTGTTCCGCGTAGGACTGGTGCGGCTCGTCAGCCGC GCCACACAGTCGCCCAATCTACTCCAGGCGCAGACGAATGCCCTGCCTGC TGCCTTCCAGCAGCGATGCAGCATCTCCGGCAAGACGATGCGAGGTGGAC CACGGGTGCCCAAGGCCGCCCCCTATCCGTACAAGACGAAGAAGTACAGC GTGTTCAATGCTATTTTCGACAAGACCTCCAAGCGTTTTGACGAGAACTC CAAGGTGATCTGTGTGGAGGGACCCATCGCGGCCGGCAAGTCAAAGTTCG CCAAGGAACTGGCTGAGGAGCTGGACATGGAGTACTATCCGGCAGTTGAT CTGGACCTAATCTACATCAATTCGTACGGCTATGACATGAGGAAGTTGGA TCCTCAGTTGCCGCCCAGCTGCCGAAGCTACGATGTGCGCAACTTCTGCC TGGATCCCAGCCACGATCTGGCTGCCCAGTTCCAGATTCGCATGTACATG CTGCGCTATTCGCAGTACATTGATGCCCTGCAGCACGTCCTTAGCACCGG CCAGGGTGTTGTCCTCGAGCGCAGCCCCTACTCGGACTTTGTCTTCATGG AGGCCATGTTTCGGCAGGGTTATCTGTCACGCGGTGCGCGTTCCGTGTAT AATGAGCTCCGACAGAACACCATCGGGGAGCTGCTGAAGCCGCATTTGGT TATCTACTTGGATCTGCCGGTCGATGCCGTGAAGAAGCAGATCAAGGCAC GCAATGTGGACTACGAGGTGCAGTCAAAGGTGTTCAGCGATGCCTACTTG AGCGATTTGGAGCAGCTGTACAAGCAGCAGTACCTCAAGGACATCTCCAC CCATGCCGAGCTGCTCATCTACGACTGGACAGCCGGCGGTGAGACTGAGG TTGTGGTGGAGGATATCGAACGCATCGACTTCAACCAGTTTGAGGCCGAT ATTCACAACAAGAAGATGCTCGACTGGCGTTTCCCGCTGGAGGCCGAGTG GTGCGAAGCCCGTATCAAGTACTGCCATGAGAAGCCCGATCTGATGAATT ACTTCAATGTGCCGCGTTTCGATGTCCCGGAGCTGGTGCGCAGCGCTGAC GACGGCAAAGTCTGGCGTGATGTCTGGTTCAATGCTCCCGGCATGAAGTA CCGTCCTGGCTACAATGCAGACATGGGCGACGAGGGTCTCCTCACCAAGA CGAAAATAGGCATCAACCAGGGCATCTAGAGGGTTTTTGCTATGCTTTCG AGTTGAAATCACCTGGCGAAATGTGTTAATTATCTAATAAACAGTCTAGT AAAATAATCAGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ND42-RA | 1493 | ND42-RA | 81..1443 | 1..1363 | 6815 | 100 | Plus |
ND42-RB | 1617 | ND42-RB | 300..1608 | 55..1363 | 6545 | 100 | Plus |
ND42.a | 1408 | ND42.a | 50..1358 | 55..1363 | 6545 | 100 | Plus |
ND42-RB | 1617 | ND42-RB | 7..60 | 1..54 | 270 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 17851783..17852912 | 55..1184 | 5605 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 17852979..17853156 | 1184..1361 | 890 | 100 | Plus |
chr3R | 27901430 | chr3R | 17851490..17851543 | 1..54 | 270 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 22028020..22029149 | 55..1184 | 5650 | 100 | Plus |
3R | 32079331 | 3R | 22029216..22029395 | 1184..1363 | 900 | 100 | Plus |
3R | 32079331 | 3R | 22027727..22027780 | 1..54 | 270 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 21768851..21769980 | 55..1184 | 5650 | 100 | Plus |
3R | 31820162 | 3R | 21770047..21770226 | 1184..1363 | 900 | 100 | Plus |
3R | 31820162 | 3R | 21768558..21768611 | 1..54 | 270 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 17851490..17851543 | 1..54 | 100 | -> | Plus |
chr3R | 17851783..17852911 | 55..1183 | 99 | -> | Plus |
chr3R | 17852979..17853156 | 1184..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND42-RB | 1..1224 | 56..1279 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND42-RB | 1..1224 | 56..1279 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND42-RA | 1..1224 | 56..1279 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND42-RB | 1..1224 | 56..1279 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND42-RA | 1..1224 | 56..1279 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND42-RA | 23..1383 | 1..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND42-RA | 23..1383 | 1..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND42-RA | 19..1379 | 1..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND42-RA | 23..1383 | 1..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND42-RA | 19..1379 | 1..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22027727..22027780 | 1..54 | 100 | -> | Plus |
3R | 22028020..22029148 | 55..1183 | 100 | -> | Plus |
3R | 22029216..22029393 | 1184..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22027727..22027780 | 1..54 | 100 | -> | Plus |
3R | 22028020..22029148 | 55..1183 | 100 | -> | Plus |
3R | 22029216..22029393 | 1184..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22027727..22027780 | 1..54 | 100 | -> | Plus |
3R | 22028020..22029148 | 55..1183 | 100 | -> | Plus |
3R | 22029216..22029393 | 1184..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 17853449..17853502 | 1..54 | 100 | -> | Plus |
arm_3R | 17853742..17854870 | 55..1183 | 100 | -> | Plus |
arm_3R | 17854938..17855115 | 1184..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21768558..21768611 | 1..54 | 100 | -> | Plus |
3R | 21768851..21769979 | 55..1183 | 100 | -> | Plus |
3R | 21770047..21770224 | 1184..1361 | 100 | Plus |
Translation from 55 to 1278
> LD29280.pep MTAVFRVGLVRLVSRATQSPNLLQAQTNALPAAFQQRCSISGKTMRGGPR VPKAAPYPYKTKKYSVFNAIFDKTSKRFDENSKVICVEGPIAAGKSKFAK ELAEELDMEYYPAVDLDLIYINSYGYDMRKLDPQLPPSCRSYDVRNFCLD PSHDLAAQFQIRMYMLRYSQYIDALQHVLSTGQGVVLERSPYSDFVFMEA MFRQGYLSRGARSVYNELRQNTIGELLKPHLVIYLDLPVDAVKKQIKARN VDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAELLIYDWTAGGETEVV VEDIERIDFNQFEADIHNKKMLDWRFPLEAEWCEARIKYCHEKPDLMNYF NVPRFDVPELVRSADDGKVWRDVWFNAPGMKYRPGYNADMGDEGLLTKTK IGINQGI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18063-PA | 407 | GF18063-PA | 1..407 | 1..407 | 2025 | 89.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11101-PA | 407 | GG11101-PA | 1..407 | 1..407 | 2104 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20975-PA | 408 | GH20975-PA | 1..406 | 1..405 | 1918 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ND-42-PC | 407 | CG6343-PC | 1..407 | 1..407 | 2146 | 100 | Plus |
ND-42-PB | 407 | CG6343-PB | 1..407 | 1..407 | 2146 | 100 | Plus |
ND-42-PA | 407 | CG6343-PA | 1..407 | 1..407 | 2146 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10455-PA | 410 | GI10455-PA | 1..408 | 1..405 | 1871 | 81.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24009-PA | 408 | GL24009-PA | 1..408 | 1..407 | 2001 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19526-PA | 408 | GA19526-PA | 1..408 | 1..407 | 2004 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26394-PA | 407 | GM26394-PA | 1..407 | 1..407 | 2162 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20916-PA | 407 | GD20916-PA | 1..407 | 1..407 | 2166 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23142-PA | 408 | GJ23142-PA | 1..406 | 1..405 | 1903 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14239-PA | 412 | GK14239-PA | 1..412 | 1..407 | 1962 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10263-PA | 407 | GE10263-PA | 1..407 | 1..407 | 2114 | 95.6 | Plus |
Translation from 55 to 1278
> LD29280.hyp MTAVFRVGLVRLVSRATQSPNLLQAQTNALPAAFQQRCSISGKTMRGGPR VPKAAPYPYKTKKYSVFNAIFDKTSKRFDENSKVICVEGPIAAGKSKFAK ELAEELDMEYYPAVDLDLIYINSYGYDMRKLDPQLPPSCRSYDVRNFCLD PSHDLAAQFQIRMYMLRYSQYIDALQHVLSTGQGVVLERSPYSDFVFMEA MFRQGYLSRGARSVYNELRQNTIGELLKPHLVIYLDLPVDAVKKQIKARN VDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAELLIYDWTAGGETEVV VEDIERIDFNQFEADIHNKKMLDWRFPLEAEWCEARIKYCHEKPDLMNYF NVPRFDVPELVRSADDGKVWRDVWFNAPGMKYRPGYNADMGDEGLLTKTK IGINQGI*