Clone LD29322 Report

Search the DGRC for LD29322

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:293
Well:22
Vector:pOT2
Associated Gene/TranscriptCG8507-RA
Protein status:LD29322.pep: gold
Preliminary Size:1614
Sequenced Size:1377

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8507 2001-01-01 Release 2 assignment
CG8507 2001-07-04 Blastp of sequenced clone
CG8507 2003-01-01 Sim4 clustering to Release 3
CG8507 2008-04-29 Release 5.5 accounting
CG8507 2008-08-15 Release 5.9 accounting
CG8507 2008-12-18 5.12 accounting

Clone Sequence Records

LD29322.complete Sequence

1377 bp (1377 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051766

> LD29322.complete
CCAGGTCAGCACTGCACCAATAATTGCAAGCTTTAAAACCGAAATAAAAA
CCACGAGGAAAATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCGCACTT
TCCGTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAGAGCAA
GAAGTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAAGCAGG
AGAAGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCATGGCC
AAGTTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAGCCCAA
GCTCAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGAGATCG
CTTGGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGAAGGCC
GACGAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGATCTGCT
AGAGCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTACAAGA
AATTCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCAAGGAC
AAGAAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTTACTGC
AGAGGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGATAAAG
TGGATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACACCGAC
AAGCATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAATCTGAT
TTCGAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAACGTGA
AGAGTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGGGCATC
AAGGATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGTCCACACAG
TCAGGACTTCATTGAACCCAAGGTCCAGGGTCTATGGCGAGTGGCCCAGG
CTAGCAATTTTACGGTTAAAGAACTGGAGTCCATTAAAACCGAATTGCAT
CACTTCGAAAGTCGCCTATTAAAGCTGCGTCACTTGCATGCCGAGCATGC
TTTGCAAAAGGAGAAATACAAGGGCGAAAAAGTGAAGGACAAAAGCAGCC
GCTTTGAGGAAATGGAGGATCAGCTGAAGAAGCAAACTCGCAAAGTGGAG
AAGCTCCAGGAGAACATTGAAAAAACCATCTTCAAGCACACCGAGCTTTA
ATAATTTGAAAGTGAAACACTGAAAGTGCCAAGCGAATAAATTAGATTTA
ATTGCAACTGTTTGTGTAACGCACAAAAATATTCATTCTTGCTGCTATTC
AGCATAGATATAATTTTGATACCAAATATCATTTGAACATAAATAAAATC
TCAAGTTTAAAAAAAAAAAAAAAAAAA

LD29322.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-RA 1507 CG8507-RA 130..1489 1..1360 6800 100 Plus
CG8507.a 1360 CG8507.a 103..1342 121..1360 6200 100 Plus
CG8507.a 1360 CG8507.a 40..104 1..65 325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5618232..5618594 711..1073 1815 100 Plus
chr3R 27901430 chr3R 5618647..5618934 1071..1358 1440 100 Plus
chr3R 27901430 chr3R 5617345..5617627 1..283 1415 100 Plus
chr3R 27901430 chr3R 5617682..5617897 284..499 1080 100 Plus
chr3R 27901430 chr3R 5617957..5618170 497..710 1070 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9792396..9792758 711..1073 1815 100 Plus
3R 32079331 3R 9792811..9793100 1071..1360 1450 100 Plus
3R 32079331 3R 9791509..9791791 1..283 1415 100 Plus
3R 32079331 3R 9791846..9792061 284..499 1080 100 Plus
3R 32079331 3R 9792121..9792334 497..710 1070 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9533227..9533589 711..1073 1815 100 Plus
3R 31820162 3R 9533642..9533931 1071..1360 1450 100 Plus
3R 31820162 3R 9532340..9532622 1..283 1415 100 Plus
3R 31820162 3R 9532677..9532892 284..499 1080 100 Plus
3R 31820162 3R 9532952..9533165 497..710 1070 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:36:56 has no hits.

LD29322.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:37:52 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5617345..5617627 1..283 100 -> Plus
chr3R 5617682..5617897 284..499 100 -> Plus
chr3R 5617960..5618170 500..710 100 -> Plus
chr3R 5618232..5618593 711..1072 100 -> Plus
chr3R 5618649..5618934 1073..1358 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:37 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 1..1140 62..1201 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:29 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 1..1140 62..1201 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:11 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 1..1140 62..1201 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:06 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 1..1140 62..1201 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:35:51 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 1..1140 62..1201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:16:53 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 40..1397 1..1358 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:29 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 40..1397 1..1358 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:11 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 27..1384 1..1358 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:07 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 40..1397 1..1358 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:35:51 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 27..1384 1..1358 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:52 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9792813..9793098 1073..1358 100   Plus
3R 9791509..9791791 1..283 100 -> Plus
3R 9791846..9792061 284..499 100 -> Plus
3R 9792124..9792334 500..710 100 -> Plus
3R 9792396..9792757 711..1072 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:52 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9792813..9793098 1073..1358 100   Plus
3R 9791509..9791791 1..283 100 -> Plus
3R 9791846..9792061 284..499 100 -> Plus
3R 9792124..9792334 500..710 100 -> Plus
3R 9792396..9792757 711..1072 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:52 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9792813..9793098 1073..1358 100   Plus
3R 9791509..9791791 1..283 100 -> Plus
3R 9791846..9792061 284..499 100 -> Plus
3R 9792124..9792334 500..710 100 -> Plus
3R 9792396..9792757 711..1072 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:11 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5618535..5618820 1073..1358 100   Plus
arm_3R 5617231..5617513 1..283 100 -> Plus
arm_3R 5617568..5617783 284..499 100 -> Plus
arm_3R 5617846..5618056 500..710 100 -> Plus
arm_3R 5618118..5618479 711..1072 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:37 Download gff for LD29322.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9532955..9533165 500..710 100 -> Plus
3R 9533644..9533929 1073..1358 100   Plus
3R 9533227..9533588 711..1072 100 -> Plus
3R 9532340..9532622 1..283 100 -> Plus
3R 9532677..9532892 284..499 100 -> Plus

LD29322.hyp Sequence

Translation from 0 to 1200

> LD29322.hyp
QVSTAPIIASFKTEIKTTRKMVRSALVVAAIALSVLIALQGVDADKKQSK
KYSKEANDPHFQQVKQEKYDPDFKSIQRPFRMAKLNLVWAKAQNRLTEPK
LKSLYMELKIHDKEEIAWKQLNSQHKDKDGLKADELRRKLIGIMSSYDLL
EHFDDTQDTEKLKPYKKFHDAEERHRNKSLFKDKKLNRLWEKAEISGFTA
EELKSLKQEFDHHQDKVDVYYSLLENIGTVDTDKHENAINTEDLDTYNLI
SNDVNENDIKTHAQNVKSFENDLNTLRGHHTGIKDHYDRLERLVSSGPHS
QDFIEPKVQGLWRVAQASNFTVKELESIKTELHHFESRLLKLRHLHAEHA
LQKEKYKGEKVKDKSSRFEEMEDQLKKQTRKVEKLQENIEKTIFKHTEL*

LD29322.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-PA 379 CG8507-PA 1..379 21..399 1965 100 Plus

LD29322.pep Sequence

Translation from 61 to 1200

> LD29322.pep
MVRSALVVAAIALSVLIALQGVDADKKQSKKYSKEANDPHFQQVKQEKYD
PDFKSIQRPFRMAKLNLVWAKAQNRLTEPKLKSLYMELKIHDKEEIAWKQ
LNSQHKDKDGLKADELRRKLIGIMSSYDLLEHFDDTQDTEKLKPYKKFHD
AEERHRNKSLFKDKKLNRLWEKAEISGFTAEELKSLKQEFDHHQDKVDVY
YSLLENIGTVDTDKHENAINTEDLDTYNLISNDVNENDIKTHAQNVKSFE
NDLNTLRGHHTGIKDHYDRLERLVSSGPHSQDFIEPKVQGLWRVAQASNF
TVKELESIKTELHHFESRLLKLRHLHAEHALQKEKYKGEKVKDKSSRFEE
MEDQLKKQTRKVEKLQENIEKTIFKHTEL*

LD29322.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17843-PA 376 GF17843-PA 21..376 22..379 1634 87.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17180-PA 379 GG17180-PA 1..379 1..379 1943 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14081-PA 170 GH14081-PA 1..170 210..379 749 83.5 Plus
Dgri\GH14080-PA 166 GH14080-PA 1..165 1..164 671 75.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-PA 379 CG8507-PA 1..379 1..379 1965 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10613-PA 380 GI10613-PA 1..380 1..379 1677 82.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24311-PA 295 GL24311-PA 1..295 86..379 1389 90.5 Plus
Dper\GL24312-PA 65 GL24312-PA 4..65 318..379 258 87.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21127-PA 378 GA21127-PA 17..378 19..379 1711 89.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23842-PA 379 GM23842-PA 1..379 1..379 1987 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18645-PA 379 GD18645-PA 1..379 1..379 1984 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22967-PA 380 GJ22967-PA 1..380 1..379 1691 83.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12751-PA 375 GK12751-PA 2..375 5..379 1720 86.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25991-PA 379 GE25991-PA 1..379 1..379 1968 98.9 Plus