Clone LD29352 Report

Search the DGRC for LD29352

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:293
Well:52
Vector:pOT2
Associated Gene/TranscriptCG5877-RB
Protein status:LD29352.pep: gold
Preliminary Size:2918
Sequenced Size:2693

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5877 2001-01-01 Release 2 assignment
CG5877 2001-11-29 Blastp of sequenced clone
CG5877 2003-01-01 Sim4 clustering to Release 3
CG5877 2008-04-29 Release 5.5 accounting
CG5877 2008-08-15 Release 5.9 accounting
CG5877 2008-12-18 5.12 accounting

Clone Sequence Records

LD29352.complete Sequence

2693 bp (2693 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069561

> LD29352.complete
ATACAATCCCCATGACTTCTCAAGGGCTCACTCCAAATTTTCCCTAAAAC
GTAGTCGCTACGTCAGAGAGAAACTGATCGCTGATGCACCCAGCGAAGAT
GAGGTGTCCAGGCTGCAGGAGCAGCTCATACGCACCAAAGTGCTCGTCCA
GCAGGAACCCGAGGTACTGGACCACTGGCTGCAGCTGCACCGTCTGCTCA
ATCTCAACTTGGACAAGGCCAATCGGCTGGCGGTGGCGGAACAACAGATA
CACAGCCTGGAAACGGCCATGGAGCACCATCCGTCCAATCAACAGATTCT
GCGGCTCTACACGCACGTGGCCAATGCCACCTATCAGGCCAACGAGGTTG
CTAGGCGATTCGAGAAAATGCTGAAGAGAAACCCATTCCAGTACACACTG
TGGAGCAACCTAATAATGATCACCCAAGGCGACATGGCTTGTTGCAACGT
GTCCGCTGTGCTCCGGATTTACGAGTACAGCATGCGCCGCATGCATGTGG
GACACAACGATGAAATAACCCGAAGATTCATCATTAAGGAGACTGATGTG
ATAATGCTAAAACTTTTTCACAATTGCTTACTATTCCTACGCCAATCGGG
CCATACTAACTGGATGTTTGCTCTGATTCGTTTGTCTATGGAGTTGAATT
TCCCCTACCTGACGTTCGAATGCCTACAAGCACATGCAGGAAGAGAAAAA
GCATTGATTGGATTCGAGGAAGTGGTGCTGCGTTCGGGAATGCCGATGCC
CGAGATCTGGACGCGTGTGGAGCAGCTCAGACAGGCATACTGCTTCCTGC
CGTTGAAAGACAAGCTGGCTTCGTCGACTAATGTCTTCAAAAACAAGATG
AACGCCGAACGATACTTTTGCAGCGACAAACTTGTCCCATATGTACACGC
ACTCAAGTCGCAGAATAATCGTCTGCACCTGGTGCTCGTGGTTGTTCAAC
TAATGAAATTGCCCCTGATTCGCAGCGCTAGTTTGGCGGACAAATTGAAT
CCTTGCATCGAGGACTTCGGCGAGTCTGAGGCCATTGAAATGCTTTTCGC
TGCCATAGTAGATAGGCACTCCTATGCAGTGGCTTCGTTGCAATATCAAT
TTGATGCAGCCATGATCGACTTAGCCAGAGAGATGTCCGTGACGCCCAGC
TACATGCCGCATCTTGTTGGCCATAAACTGTATGCGGATACCGTGAGTAA
TATGCTACTCAAATGCGTCGAAGTCTTTATCGGCGAGGAGTCCAAGCGAC
GATTGTTGCTTATTCTGTATTTGCGATTCCAAAAACTATTAATAGTGCTG
CACAAGTCCATGGGCAAGCTAACGAAAAAATTCTTTAAGGATAAACGAAC
ACGGATGCGCAAACTGATCAATTTGACGGAGAACCGAAATGTTATTAGTT
TCTACACGGAACAGGCCTTGTGCGAAATTGAGGCTAAGCATTACCGACTG
GGCTTTTCCATAATTTCGAGGATCATCACAAAAAAATCGGAAGAATCCAG
CTGCATTAGTTGCGTGGACACAATGCATCTCTATTTAGTTTGTGCAGAAT
TGCATATACATAGGGGCCGCATATCTAAGGCCATCGGCATACTCGTTTCA
CTGTGTTTGGAAAAACATGCCGGAGTAAAGCAGACAACTGTCTACTCCAA
GGAACAGGTTTTGAAAGGCCTGAGAAATGCAGAGAAAATGGTGCGAGCGG
AACTGAAATCCCTCGATACCCAGCCAGCTGAGATGTCTTTGGAGGAGTAC
TTCCAGCCCAACAAATTGCTCATCCTCTTGCGCGCTATCTGTTTGATCGA
AGTGCTGAATAATCGTCGTCATAAGGAGGCTAGAATGTGGCTCAATGACC
TGCAGAATAACGAATTTGGTCCCGAGGCCGTCAAGGACAGCGAAAGAAAG
CGTTTCCTTAGGGAGCAGATCATGGAAATACAGATGCTACATCTGCGTTT
GTCCTTTTTAGTATTTGGCGAAGTTGAATTCTATACTGGATTCAAAAAGA
TCAAGCTACATGAACTGCTCGAGAATGGACTCGAAGAGTTTCCACGAAAT
ATGGTGTTTCTACAGCTGTGGGCCAGCTTAAAATCGATTATGTGGCACAA
GCAGCGTAGCCGGCTCATACGCACCAAAGCCGGCATCGCTTCACTGGCGC
ACTTGGTCGTTGCGATTCACAATCGCTTTGGAATCGTAGATACCAACGAT
AAGTTTTCAAAGGAAGCCACAAGGAAGATGGTGTGCAATCGTTTGGTCAG
CATTGTCGAGACTTTTCTCCCGACCAATTTAGATCGTTTGGATGTGGAGG
AAGAGCATTATCGCATACTGCGCAGGAACTCCATCTATTGGCGCTTGTAC
ATGATTGCCCTATCCAAAACGAATGCCTCGTTTAGGCGCAGCAAAGAAGT
CCTTATAATGGCCATGGACGAGTGTCCCTGGGACAAGTCACTACTGATGG
AAGGCGCCAAGGTTTTGCCAGTGAAACTAGCATCGCTACAGGACCTGATG
ACCGAAAAAGAGATTCGCATTTTCGCTATGCCCGAGGAAGTGGACGTCTT
GAGGGGCTTTTAAGTCGCTTTGGTTTTATTCGTTTGTTTTGAGGTTATTT
GCCATTCGGGCGACTCGATAAGTTCGCATCATAAATATATTTATTTCTTC
AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD29352.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5877-RA 3328 CG5877-RA 516..3171 1..2656 13280 100 Plus
CG5877.b 3762 CG5877.b 516..3171 1..2656 13280 100 Plus
CG5877.a 3135 CG5877.a 376..2978 54..2656 13015 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15184285..15186594 345..2654 11520 99.9 Plus
chrX 22417052 chrX 15183497..15183844 1..348 1740 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15294335..15296646 345..2656 11560 100 Plus
X 23542271 X 15293548..15293895 1..348 1740 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15302433..15304744 345..2656 11560 100 Plus
X 23527363 X 15301646..15301993 1..348 1740 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:56:54 has no hits.

LD29352.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:57:36 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15184287..15186594 347..2654 99   Plus
chrX 15183497..15183842 1..346 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:41 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
CG5877-RA 393..2955 1..2563 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:25:21 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
CG5877-RA 393..2955 1..2563 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:21:12 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
CG5877-RA 393..2955 1..2563 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:52:28 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
CG5877-RA 393..2955 1..2563 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:30 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
CG5877-RA 393..2955 1..2563 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:01:13 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
CG5877-RA 516..3169 1..2654 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:25:21 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
CG5877-RA 516..3169 1..2654 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:21:12 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
CG5877-RA 518..3171 1..2654 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:52:28 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
CG5877-RA 516..3169 1..2654 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:30 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
CG5877-RA 518..3171 1..2654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:36 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
X 15293548..15293893 1..346 100 -> Plus
X 15294337..15296644 347..2654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:36 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
X 15293548..15293893 1..346 100 -> Plus
X 15294337..15296644 347..2654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:36 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
X 15293548..15293893 1..346 100 -> Plus
X 15294337..15296644 347..2654 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:21:12 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15187581..15187926 1..346 100 -> Plus
arm_X 15188370..15190677 347..2654 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:41 Download gff for LD29352.complete
Subject Subject Range Query Range Percent Splice Strand
X 15301646..15301991 1..346 100 -> Plus
X 15302435..15304742 347..2654 100   Plus

LD29352.hyp Sequence

Translation from 0 to 2562

> LD29352.hyp
YNPHDFSRAHSKFSLKRSRYVREKLIADAPSEDEVSRLQEQLIRTKVLVQ
QEPEVLDHWLQLHRLLNLNLDKANRLAVAEQQIHSLETAMEHHPSNQQIL
RLYTHVANATYQANEVARRFEKMLKRNPFQYTLWSNLIMITQGDMACCNV
SAVLRIYEYSMRRMHVGHNDEITRRFIIKETDVIMLKLFHNCLLFLRQSG
HTNWMFALIRLSMELNFPYLTFECLQAHAGREKALIGFEEVVLRSGMPMP
EIWTRVEQLRQAYCFLPLKDKLASSTNVFKNKMNAERYFCSDKLVPYVHA
LKSQNNRLHLVLVVVQLMKLPLIRSASLADKLNPCIEDFGESEAIEMLFA
AIVDRHSYAVASLQYQFDAAMIDLAREMSVTPSYMPHLVGHKLYADTVSN
MLLKCVEVFIGEESKRRLLLILYLRFQKLLIVLHKSMGKLTKKFFKDKRT
RMRKLINLTENRNVISFYTEQALCEIEAKHYRLGFSIISRIITKKSEESS
CISCVDTMHLYLVCAELHIHRGRISKAIGILVSLCLEKHAGVKQTTVYSK
EQVLKGLRNAEKMVRAELKSLDTQPAEMSLEEYFQPNKLLILLRAICLIE
VLNNRRHKEARMWLNDLQNNEFGPEAVKDSERKRFLREQIMEIQMLHLRL
SFLVFGEVEFYTGFKKIKLHELLENGLEEFPRNMVFLQLWASLKSIMWHK
QRSRLIRTKAGIASLAHLVVAIHNRFGIVDTNDKFSKEATRKMVCNRLVS
IVETFLPTNLDRLDVEEEHYRILRRNSIYWRLYMIALSKTNASFRRSKEV
LIMAMDECPWDKSLLMEGAKVLPVKLASLQDLMTEKEIRIFAMPEEVDVL
RGF*

LD29352.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5877-PD 984 CG5877-PD 132..984 1..853 4368 100 Plus
CG5877-PA 984 CG5877-PA 132..984 1..853 4368 100 Plus
CG5877-PB 731 CG5877-PB 1..731 123..853 3744 100 Plus

LD29352.pep Sequence

Translation from 367 to 2562

> LD29352.pep
MLKRNPFQYTLWSNLIMITQGDMACCNVSAVLRIYEYSMRRMHVGHNDEI
TRRFIIKETDVIMLKLFHNCLLFLRQSGHTNWMFALIRLSMELNFPYLTF
ECLQAHAGREKALIGFEEVVLRSGMPMPEIWTRVEQLRQAYCFLPLKDKL
ASSTNVFKNKMNAERYFCSDKLVPYVHALKSQNNRLHLVLVVVQLMKLPL
IRSASLADKLNPCIEDFGESEAIEMLFAAIVDRHSYAVASLQYQFDAAMI
DLAREMSVTPSYMPHLVGHKLYADTVSNMLLKCVEVFIGEESKRRLLLIL
YLRFQKLLIVLHKSMGKLTKKFFKDKRTRMRKLINLTENRNVISFYTEQA
LCEIEAKHYRLGFSIISRIITKKSEESSCISCVDTMHLYLVCAELHIHRG
RISKAIGILVSLCLEKHAGVKQTTVYSKEQVLKGLRNAEKMVRAELKSLD
TQPAEMSLEEYFQPNKLLILLRAICLIEVLNNRRHKEARMWLNDLQNNEF
GPEAVKDSERKRFLREQIMEIQMLHLRLSFLVFGEVEFYTGFKKIKLHEL
LENGLEEFPRNMVFLQLWASLKSIMWHKQRSRLIRTKAGIASLAHLVVAI
HNRFGIVDTNDKFSKEATRKMVCNRLVSIVETFLPTNLDRLDVEEEHYRI
LRRNSIYWRLYMIALSKTNASFRRSKEVLIMAMDECPWDKSLLMEGAKVL
PVKLASLQDLMTEKEIRIFAMPEEVDVLRGF*

LD29352.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21230-PA 1010 GF21230-PA 263..1008 1..729 1446 42 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17871-PA 993 GG17871-PA 257..991 1..729 2280 62 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17615-PA 992 GH17615-PA 274..722 1..465 776 40.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5877-PD 984 CG5877-PD 254..984 1..731 3744 100 Plus
CG5877-PB 731 CG5877-PB 1..731 1..731 3744 100 Plus
CG5877-PA 984 CG5877-PA 254..984 1..731 3744 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21771-PA 1030 GI21771-PA 276..1024 6..730 1197 35.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15996-PA 828 GL15996-PA 89..826 1..729 1698 46.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24354-PA 999 GA24354-PA 260..997 1..729 1690 46.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19624-PA 641 GM19624-PA 1..641 91..731 2862 86 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17202-PA 983 GD17202-PA 253..983 1..731 3359 87 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16943-PA 986 GJ16943-PA 257..984 1..729 1301 41.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16198-PA 871 GK16198-PA 251..539 1..284 707 49 Plus
Dwil\GK16198-PA 871 GK16198-PA 532..863 405..729 535 40.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17173-PA 991 GE17173-PA 256..989 1..729 2404 64.6 Plus