BDGP Sequence Production Resources |
Search the DGRC for LD29354
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 293 |
Well: | 54 |
Vector: | pOT2 |
Associated Gene/Transcript | CG9636-RC |
Protein status: | LD29354.pep: gold |
Preliminary Size: | 3083 |
Sequenced Size: | 2807 |
Gene | Date | Evidence |
---|---|---|
CG9636 | 2001-01-01 | Release 2 assignment |
CG9636 | 2001-07-04 | Blastp of sequenced clone |
CG9636 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9636 | 2008-04-29 | Release 5.5 accounting |
CG9636 | 2008-08-15 | Release 5.9 accounting |
CG9636 | 2008-12-18 | 5.12 accounting |
2807 bp (2807 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060390
> LD29354.complete AGCAAAAGAAAGGCGCAGCTAGCTAAATCAAAACTATTCAAAACGGAATT TGCAATAAAACTAAATTATAATTCAGTAATACGACTGTCAGAGGACATGC TCTAAGTTCCGGGGAAGTCCCCATCTAGTGAGTTTCAGCATTTTGAGTGA CGCCCTGCGTGGGAAACTTTTTGATTACCGCCGATCCAGCAAGAGACACT TCGAGAAGTCCATTTAAACTATATAGCCATTATGACCAATTTAGAGAAGC AGCACGAGATGGTGAAGCGTAGCCTGGTGCAGTTTATCAGCGGCCACATT CCGGGTGCCGACTTTAGTGTTGTGGACGAAATCGTGCTTTCGTACATTAT TTCGATTTTGGAGGAGGCATCCCAGGATCCATGCTTCGATGTTGAGGGCT TTGTGGAGATGATGGGAGCCTACTTCGAGGAGTTTTCAACCATTGACCAG GGCATCATCTGTGACTGGATCTACAAGCTGGCCAATGAGCTTACCGATAT GGAGAAAACCCAGGAAAACCCAGACGCCGTCAACTTATCGCTAAACTCCC TGAGCCTCTCCAGCATTATTCCGGAGTCCAAGCTGCGTGCTCGCAACTCG TCAACTTCCGAAAAAGACGAGCTCTCATCGAACAGCAGCAGCAGTGGCGG CTGTGGCGGCAACAAGCGTTCCCAACATCTTTCGGAGACTAGCGATGGAG GTTCCACCGACAGCTCCAGCTCCACTTGCGACTACTTCCTGGACGAGACT GAGGTGCTCCAGGAAATGTTTCCGGATTCGGCAATAGCCGAGATCAAACA CTGCATCGCAATTTCCAAGGGGGACATCGATAGCGCCACCCAGATTCTCT TGCATCGTCAAGAGACGAACCAGTGTATTACTGACAAGTCGCATACTACT TATATGAAGAAGAATGTAATCGTCGACGATAATGAACTCAAGAATCGTAT TATCGCTAGGTACTCCTATGTTGACAAGAATGCCACCCAGCGCGAGTACA AGCCGGTGGTACCGAAGATGGAGCCTCGCAAGCTGGTTCGCTACCGGGAC AATAAGATCGTATCGCTTAAGGGCGAGCGGTACACCGAGATTAAGCGTGA CGAAGATGCTGAGTTAAAAAAACCCAAGAAGCAGATTCAACCGTAACTAA AGAGGAACAAAACCCTCTTCAAGTATTTTATCAAAAAGCAAATTAATACA CACCCCAATAACTTATCCGCACCCACGAAAACGATCTTCGCCAGTAGCAG TAGCTGCAGATCCAACGTCACCAACAACAGCAGCCATCCCGAAATCGAGC ACAGTGTGTGCAATCATATGCATATTGTTGGGCTGAGCGCCGCCAAAAGC CATGTCAGCACCTATTCCAGCTTCACCACACCAGTGATCCCCGCCAAGCT TAGCCAATGTTTAGACGCTTCCCAAGACGATGACGATGAGCAGCGAGAGT TTAGAGACAAAGACGAGACACCGAGCACAGCGAATCGGTTCCCATATCCG AGTGAGTATGGTGCAGAGTTTGTGGCATCTGCCGGCATGTTGGTCATACT GTTGCTAGTTGGCCATTGCCACAGGACCTTGAGCCCTCATCGCGCCAATG CCCATGACAAAGACACAAAGACTTTACATACCAAATTAGTTGATAGTTAT GCTTTAGGACTACTCGCTTATGCAAATTTTGAGAGCCCATCCATCGCGGC CGCCTGCTTATGAGTCTCGATGCTGGGAGCAGGCGGTTCAGACGGATCTG GACATGGATCTGTTTCCGTTGCCAGTCGTCAATTATGACGACTGGGGTCG CGCCTGCGCTGTGACTTTTCCTTAGTTCCTTACGCAAGCGAATTCAAATC GAACCGTATCTGTGAAAATCGTGAATCTCAAACTCTTGAATGTCCTCGAA CAGTATTGTTAAACATACTTCAGTCCCTAGGATCAGACGCAGGTGCGACA CCAAAACCGAATTTGGCGCTCAAATAGACTTATTTAGACGTTTTTAGGTA CTCGAATTGATAAATTTTGTTGGCCGTGTGCGTGTTTTTGAAAAGCGCAG CTGCACAAGTAACTTGCCATATCTGTTTAAGATCTGTTAACCCATTTTGT ATCGTGTAACTCGTTTTGTTTTTCTCTGGTCCAAGCTAACTAGCAAGAGT AAACTAGCAACAATGCCACCAAAGCCACATGCAACACAAACTAGTCCTCA CCGCCCACTGAGATATCTGGAACCCATAACAATTCGGCTACTGCTCGGTG TAAGACAGCAATACTAACAATAATATAAACGTATTCACCATATGAACTAA TCGAATAATCAACTATTTATACAGCGTAGCCTACCCCAAATCCTTCCCAA TGATTGTAATGATTGTAACCTACAATATCTCGGCAGTCCCACGCCCTATT CATGTTAGATGTAAGCAACCGAAATATTTTTCGGCAGTTATTACTTTTAC ACTTTTTGTTTGAAACAAAAGATATTTACCCATTTTATATTTTTTTTGTA ACTCAGAATTTAGCTTAAGTTTTTAATCCTGACCACCGCTTAAATTTACG TATCGAACTGCATTTAAGCACATGAGTTTTTTATATTTTTATTCAGCACC ACGCTACAAATGTTTCAACCATCACATATTCGTATTTATGTTTACCTTGT TTTGGTTTGATATGCACTTCTTTTATTTTAGTTTTATTTTATATATATTA ATATTATTTTTTGTGATAATTTAAAAAAGGCAAAACACTCGAATTAAACT TTTAAAATAATTAAATAAACTACTATCAATATTTAACGCAAAAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9636-RC | 2909 | CG9636-RC | 118..2907 | 1..2790 | 13950 | 100 | Plus |
CG9636-RB | 2451 | CG9636-RB | 27..1168 | 1..1142 | 5710 | 100 | Plus |
CG9636-RA | 2334 | CG9636-RA | 154..1051 | 245..1142 | 4490 | 100 | Plus |
CG9636-RB | 2451 | CG9636-RB | 1590..2449 | 1931..2790 | 4300 | 100 | Plus |
CG9636-RA | 2334 | CG9636-RA | 1473..2332 | 1931..2790 | 4300 | 100 | Plus |
CG9636-RB | 2451 | CG9636-RB | 1169..1462 | 1245..1538 | 1470 | 100 | Plus |
CG9636-RA | 2334 | CG9636-RA | 1052..1345 | 1245..1538 | 1470 | 100 | Plus |
CG9636-RB | 2451 | CG9636-RB | 1463..1590 | 1684..1811 | 640 | 100 | Plus |
CG9636-RA | 2334 | CG9636-RA | 1346..1473 | 1684..1811 | 640 | 100 | Plus |
CG9636-RA | 2334 | CG9636-RA | 27..153 | 1..127 | 635 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4066758..4068591 | 2789..956 | 9095 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 4069233..4069777 | 545..1 | 2725 | 100 | Minus |
chr3R | 27901430 | chr3R | 4068929..4069175 | 792..546 | 1235 | 100 | Minus |
chr3R | 27901430 | chr3R | 4068688..4068859 | 962..791 | 860 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 8240742..8242580 | 2794..956 | 9180 | 99.9 | Minus |
3R | 32079331 | 3R | 8243222..8243766 | 545..1 | 2725 | 100 | Minus |
3R | 32079331 | 3R | 8242918..8243164 | 792..546 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 8242677..8242848 | 962..791 | 860 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 7981573..7983411 | 2794..956 | 9180 | 99.9 | Minus |
3R | 31820162 | 3R | 7984053..7984597 | 545..1 | 2725 | 100 | Minus |
3R | 31820162 | 3R | 7983749..7983995 | 792..546 | 1235 | 100 | Minus |
3R | 31820162 | 3R | 7983508..7983679 | 962..791 | 860 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
opus | 7521 | opus OPUS 7521bp | 6093..6242 | 2722..2573 | 145 | 59.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1135 | 1242..1286 | 126 | 75.6 | Plus |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 2681..2738 | 1..59 | 121 | 69.5 | Plus |
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 795..876 | 1..84 | 118 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6803 | 1189..1284 | 116 | 62.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4066758..4068587 | 960..2789 | 99 | <- | Minus |
chr3R | 4068691..4068857 | 793..959 | 100 | <- | Minus |
chr3R | 4068929..4069175 | 546..792 | 100 | <- | Minus |
chr3R | 4069233..4069777 | 1..545 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9636-RC | 1..915 | 232..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9636-RC | 1..915 | 232..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9636-RC | 1..915 | 232..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9636-RC | 1..915 | 232..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9636-RC | 1..915 | 232..1146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9636-RC | 1..2787 | 3..2789 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9636-RC | 1..2787 | 3..2789 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9636-RC | 60..2848 | 1..2789 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9636-RC | 1..2787 | 3..2789 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9636-RC | 27..2815 | 1..2789 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8240747..8242576 | 960..2789 | 100 | <- | Minus |
3R | 8242680..8242846 | 793..959 | 100 | <- | Minus |
3R | 8242918..8243164 | 546..792 | 100 | <- | Minus |
3R | 8243222..8243766 | 1..545 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8240747..8242576 | 960..2789 | 100 | <- | Minus |
3R | 8242680..8242846 | 793..959 | 100 | <- | Minus |
3R | 8242918..8243164 | 546..792 | 100 | <- | Minus |
3R | 8243222..8243766 | 1..545 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8240747..8242576 | 960..2789 | 100 | <- | Minus |
3R | 8242680..8242846 | 793..959 | 100 | <- | Minus |
3R | 8242918..8243164 | 546..792 | 100 | <- | Minus |
3R | 8243222..8243766 | 1..545 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4066469..4068298 | 960..2789 | 100 | <- | Minus |
arm_3R | 4068402..4068568 | 793..959 | 100 | <- | Minus |
arm_3R | 4068640..4068886 | 546..792 | 100 | <- | Minus |
arm_3R | 4068944..4069488 | 1..545 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7981578..7983407 | 960..2789 | 100 | <- | Minus |
3R | 7983511..7983677 | 793..959 | 100 | <- | Minus |
3R | 7983749..7983995 | 546..792 | 100 | <- | Minus |
3R | 7984053..7984597 | 1..545 | 100 | Minus |
Translation from 231 to 1145
> LD29354.hyp MTNLEKQHEMVKRSLVQFISGHIPGADFSVVDEIVLSYIISILEEASQDP CFDVEGFVEMMGAYFEEFSTIDQGIICDWIYKLANELTDMEKTQENPDAV NLSLNSLSLSSIIPESKLRARNSSTSEKDELSSNSSSSGGCGGNKRSQHL SETSDGGSTDSSSSTCDYFLDETEVLQEMFPDSAIAEIKHCIAISKGDID SATQILLHRQETNQCITDKSHTTYMKKNVIVDDNELKNRIIARYSYVDKN ATQREYKPVVPKMEPRKLVRYRDNKIVSLKGERYTEIKRDEDAELKKPKK QIQP*
Translation from 231 to 1145
> LD29354.pep MTNLEKQHEMVKRSLVQFISGHIPGADFSVVDEIVLSYIISILEEASQDP CFDVEGFVEMMGAYFEEFSTIDQGIICDWIYKLANELTDMEKTQENPDAV NLSLNSLSLSSIIPESKLRARNSSTSEKDELSSNSSSSGGCGGNKRSQHL SETSDGGSTDSSSSTCDYFLDETEVLQEMFPDSAIAEIKHCIAISKGDID SATQILLHRQETNQCITDKSHTTYMKKNVIVDDNELKNRIIARYSYVDKN ATQREYKPVVPKMEPRKLVRYRDNKIVSLKGERYTEIKRDEDAELKKPKK QIQP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16167-PA | 303 | GF16167-PA | 1..303 | 1..304 | 1272 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17469-PA | 458 | GG17469-PA | 1..304 | 1..304 | 1603 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19245-PA | 306 | GH19245-PA | 1..306 | 1..304 | 1270 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9636-PC | 304 | CG9636-PC | 1..304 | 1..304 | 1555 | 100 | Plus |
CG9636-PD | 295 | CG9636-PD | 1..295 | 10..304 | 1507 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24280-PA | 308 | GI24280-PA | 1..308 | 1..304 | 1336 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23273-PA | 303 | GL23273-PA | 1..303 | 1..304 | 1293 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21931-PA | 303 | GA21931-PA | 1..303 | 1..304 | 1284 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26363-PA | 462 | GM26363-PA | 1..304 | 1..304 | 1602 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20885-PA | 304 | GD20885-PA | 1..304 | 1..304 | 1611 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23059-PA | 307 | GJ23059-PA | 1..307 | 1..304 | 1297 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14451-PA | 304 | GK14451-PA | 1..304 | 1..304 | 1242 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24868-PA | 458 | GE24868-PA | 1..304 | 1..304 | 1602 | 99 | Plus |