Clone LD29354 Report

Search the DGRC for LD29354

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:293
Well:54
Vector:pOT2
Associated Gene/TranscriptCG9636-RC
Protein status:LD29354.pep: gold
Preliminary Size:3083
Sequenced Size:2807

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9636 2001-01-01 Release 2 assignment
CG9636 2001-07-04 Blastp of sequenced clone
CG9636 2003-01-01 Sim4 clustering to Release 3
CG9636 2008-04-29 Release 5.5 accounting
CG9636 2008-08-15 Release 5.9 accounting
CG9636 2008-12-18 5.12 accounting

Clone Sequence Records

LD29354.complete Sequence

2807 bp (2807 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060390

> LD29354.complete
AGCAAAAGAAAGGCGCAGCTAGCTAAATCAAAACTATTCAAAACGGAATT
TGCAATAAAACTAAATTATAATTCAGTAATACGACTGTCAGAGGACATGC
TCTAAGTTCCGGGGAAGTCCCCATCTAGTGAGTTTCAGCATTTTGAGTGA
CGCCCTGCGTGGGAAACTTTTTGATTACCGCCGATCCAGCAAGAGACACT
TCGAGAAGTCCATTTAAACTATATAGCCATTATGACCAATTTAGAGAAGC
AGCACGAGATGGTGAAGCGTAGCCTGGTGCAGTTTATCAGCGGCCACATT
CCGGGTGCCGACTTTAGTGTTGTGGACGAAATCGTGCTTTCGTACATTAT
TTCGATTTTGGAGGAGGCATCCCAGGATCCATGCTTCGATGTTGAGGGCT
TTGTGGAGATGATGGGAGCCTACTTCGAGGAGTTTTCAACCATTGACCAG
GGCATCATCTGTGACTGGATCTACAAGCTGGCCAATGAGCTTACCGATAT
GGAGAAAACCCAGGAAAACCCAGACGCCGTCAACTTATCGCTAAACTCCC
TGAGCCTCTCCAGCATTATTCCGGAGTCCAAGCTGCGTGCTCGCAACTCG
TCAACTTCCGAAAAAGACGAGCTCTCATCGAACAGCAGCAGCAGTGGCGG
CTGTGGCGGCAACAAGCGTTCCCAACATCTTTCGGAGACTAGCGATGGAG
GTTCCACCGACAGCTCCAGCTCCACTTGCGACTACTTCCTGGACGAGACT
GAGGTGCTCCAGGAAATGTTTCCGGATTCGGCAATAGCCGAGATCAAACA
CTGCATCGCAATTTCCAAGGGGGACATCGATAGCGCCACCCAGATTCTCT
TGCATCGTCAAGAGACGAACCAGTGTATTACTGACAAGTCGCATACTACT
TATATGAAGAAGAATGTAATCGTCGACGATAATGAACTCAAGAATCGTAT
TATCGCTAGGTACTCCTATGTTGACAAGAATGCCACCCAGCGCGAGTACA
AGCCGGTGGTACCGAAGATGGAGCCTCGCAAGCTGGTTCGCTACCGGGAC
AATAAGATCGTATCGCTTAAGGGCGAGCGGTACACCGAGATTAAGCGTGA
CGAAGATGCTGAGTTAAAAAAACCCAAGAAGCAGATTCAACCGTAACTAA
AGAGGAACAAAACCCTCTTCAAGTATTTTATCAAAAAGCAAATTAATACA
CACCCCAATAACTTATCCGCACCCACGAAAACGATCTTCGCCAGTAGCAG
TAGCTGCAGATCCAACGTCACCAACAACAGCAGCCATCCCGAAATCGAGC
ACAGTGTGTGCAATCATATGCATATTGTTGGGCTGAGCGCCGCCAAAAGC
CATGTCAGCACCTATTCCAGCTTCACCACACCAGTGATCCCCGCCAAGCT
TAGCCAATGTTTAGACGCTTCCCAAGACGATGACGATGAGCAGCGAGAGT
TTAGAGACAAAGACGAGACACCGAGCACAGCGAATCGGTTCCCATATCCG
AGTGAGTATGGTGCAGAGTTTGTGGCATCTGCCGGCATGTTGGTCATACT
GTTGCTAGTTGGCCATTGCCACAGGACCTTGAGCCCTCATCGCGCCAATG
CCCATGACAAAGACACAAAGACTTTACATACCAAATTAGTTGATAGTTAT
GCTTTAGGACTACTCGCTTATGCAAATTTTGAGAGCCCATCCATCGCGGC
CGCCTGCTTATGAGTCTCGATGCTGGGAGCAGGCGGTTCAGACGGATCTG
GACATGGATCTGTTTCCGTTGCCAGTCGTCAATTATGACGACTGGGGTCG
CGCCTGCGCTGTGACTTTTCCTTAGTTCCTTACGCAAGCGAATTCAAATC
GAACCGTATCTGTGAAAATCGTGAATCTCAAACTCTTGAATGTCCTCGAA
CAGTATTGTTAAACATACTTCAGTCCCTAGGATCAGACGCAGGTGCGACA
CCAAAACCGAATTTGGCGCTCAAATAGACTTATTTAGACGTTTTTAGGTA
CTCGAATTGATAAATTTTGTTGGCCGTGTGCGTGTTTTTGAAAAGCGCAG
CTGCACAAGTAACTTGCCATATCTGTTTAAGATCTGTTAACCCATTTTGT
ATCGTGTAACTCGTTTTGTTTTTCTCTGGTCCAAGCTAACTAGCAAGAGT
AAACTAGCAACAATGCCACCAAAGCCACATGCAACACAAACTAGTCCTCA
CCGCCCACTGAGATATCTGGAACCCATAACAATTCGGCTACTGCTCGGTG
TAAGACAGCAATACTAACAATAATATAAACGTATTCACCATATGAACTAA
TCGAATAATCAACTATTTATACAGCGTAGCCTACCCCAAATCCTTCCCAA
TGATTGTAATGATTGTAACCTACAATATCTCGGCAGTCCCACGCCCTATT
CATGTTAGATGTAAGCAACCGAAATATTTTTCGGCAGTTATTACTTTTAC
ACTTTTTGTTTGAAACAAAAGATATTTACCCATTTTATATTTTTTTTGTA
ACTCAGAATTTAGCTTAAGTTTTTAATCCTGACCACCGCTTAAATTTACG
TATCGAACTGCATTTAAGCACATGAGTTTTTTATATTTTTATTCAGCACC
ACGCTACAAATGTTTCAACCATCACATATTCGTATTTATGTTTACCTTGT
TTTGGTTTGATATGCACTTCTTTTATTTTAGTTTTATTTTATATATATTA
ATATTATTTTTTGTGATAATTTAAAAAAGGCAAAACACTCGAATTAAACT
TTTAAAATAATTAAATAAACTACTATCAATATTTAACGCAAAAAAAAAAA
AAAAAAA

LD29354.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9636-RC 2909 CG9636-RC 118..2907 1..2790 13950 100 Plus
CG9636-RB 2451 CG9636-RB 27..1168 1..1142 5710 100 Plus
CG9636-RA 2334 CG9636-RA 154..1051 245..1142 4490 100 Plus
CG9636-RB 2451 CG9636-RB 1590..2449 1931..2790 4300 100 Plus
CG9636-RA 2334 CG9636-RA 1473..2332 1931..2790 4300 100 Plus
CG9636-RB 2451 CG9636-RB 1169..1462 1245..1538 1470 100 Plus
CG9636-RA 2334 CG9636-RA 1052..1345 1245..1538 1470 100 Plus
CG9636-RB 2451 CG9636-RB 1463..1590 1684..1811 640 100 Plus
CG9636-RA 2334 CG9636-RA 1346..1473 1684..1811 640 100 Plus
CG9636-RA 2334 CG9636-RA 27..153 1..127 635 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4066758..4068591 2789..956 9095 99.7 Minus
chr3R 27901430 chr3R 4069233..4069777 545..1 2725 100 Minus
chr3R 27901430 chr3R 4068929..4069175 792..546 1235 100 Minus
chr3R 27901430 chr3R 4068688..4068859 962..791 860 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8240742..8242580 2794..956 9180 99.9 Minus
3R 32079331 3R 8243222..8243766 545..1 2725 100 Minus
3R 32079331 3R 8242918..8243164 792..546 1235 100 Minus
3R 32079331 3R 8242677..8242848 962..791 860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7981573..7983411 2794..956 9180 99.9 Minus
3R 31820162 3R 7984053..7984597 545..1 2725 100 Minus
3R 31820162 3R 7983749..7983995 792..546 1235 100 Minus
3R 31820162 3R 7983508..7983679 962..791 860 100 Minus
Blast to na_te.dros performed 2019-03-16 21:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 6093..6242 2722..2573 145 59.5 Minus
roo 9092 roo DM_ROO 9092bp 1091..1135 1242..1286 126 75.6 Plus
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2681..2738 1..59 121 69.5 Plus
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 795..876 1..84 118 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6803 1189..1284 116 62.5 Plus

LD29354.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:59:39 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4066758..4068587 960..2789 99 <- Minus
chr3R 4068691..4068857 793..959 100 <- Minus
chr3R 4068929..4069175 546..792 100 <- Minus
chr3R 4069233..4069777 1..545 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:42 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 1..915 232..1146 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:31 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 1..915 232..1146 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:07:41 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 1..915 232..1146 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:08 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 1..915 232..1146 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:26 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 1..915 232..1146 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:16:55 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 1..2787 3..2789 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:30 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 1..2787 3..2789 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:41 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 60..2848 1..2789 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:08 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 1..2787 3..2789 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:26 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 27..2815 1..2789 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:59:39 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8240747..8242576 960..2789 100 <- Minus
3R 8242680..8242846 793..959 100 <- Minus
3R 8242918..8243164 546..792 100 <- Minus
3R 8243222..8243766 1..545 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:59:39 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8240747..8242576 960..2789 100 <- Minus
3R 8242680..8242846 793..959 100 <- Minus
3R 8242918..8243164 546..792 100 <- Minus
3R 8243222..8243766 1..545 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:59:39 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8240747..8242576 960..2789 100 <- Minus
3R 8242680..8242846 793..959 100 <- Minus
3R 8242918..8243164 546..792 100 <- Minus
3R 8243222..8243766 1..545 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:41 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4066469..4068298 960..2789 100 <- Minus
arm_3R 4068402..4068568 793..959 100 <- Minus
arm_3R 4068640..4068886 546..792 100 <- Minus
arm_3R 4068944..4069488 1..545 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:38 Download gff for LD29354.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7981578..7983407 960..2789 100 <- Minus
3R 7983511..7983677 793..959 100 <- Minus
3R 7983749..7983995 546..792 100 <- Minus
3R 7984053..7984597 1..545 100   Minus

LD29354.hyp Sequence

Translation from 231 to 1145

> LD29354.hyp
MTNLEKQHEMVKRSLVQFISGHIPGADFSVVDEIVLSYIISILEEASQDP
CFDVEGFVEMMGAYFEEFSTIDQGIICDWIYKLANELTDMEKTQENPDAV
NLSLNSLSLSSIIPESKLRARNSSTSEKDELSSNSSSSGGCGGNKRSQHL
SETSDGGSTDSSSSTCDYFLDETEVLQEMFPDSAIAEIKHCIAISKGDID
SATQILLHRQETNQCITDKSHTTYMKKNVIVDDNELKNRIIARYSYVDKN
ATQREYKPVVPKMEPRKLVRYRDNKIVSLKGERYTEIKRDEDAELKKPKK
QIQP*

LD29354.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9636-PC 304 CG9636-PC 1..304 1..304 1555 100 Plus
CG9636-PD 295 CG9636-PD 1..295 10..304 1507 100 Plus

LD29354.pep Sequence

Translation from 231 to 1145

> LD29354.pep
MTNLEKQHEMVKRSLVQFISGHIPGADFSVVDEIVLSYIISILEEASQDP
CFDVEGFVEMMGAYFEEFSTIDQGIICDWIYKLANELTDMEKTQENPDAV
NLSLNSLSLSSIIPESKLRARNSSTSEKDELSSNSSSSGGCGGNKRSQHL
SETSDGGSTDSSSSTCDYFLDETEVLQEMFPDSAIAEIKHCIAISKGDID
SATQILLHRQETNQCITDKSHTTYMKKNVIVDDNELKNRIIARYSYVDKN
ATQREYKPVVPKMEPRKLVRYRDNKIVSLKGERYTEIKRDEDAELKKPKK
QIQP*

LD29354.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16167-PA 303 GF16167-PA 1..303 1..304 1272 92.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17469-PA 458 GG17469-PA 1..304 1..304 1603 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19245-PA 306 GH19245-PA 1..306 1..304 1270 88.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9636-PC 304 CG9636-PC 1..304 1..304 1555 100 Plus
CG9636-PD 295 CG9636-PD 1..295 10..304 1507 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24280-PA 308 GI24280-PA 1..308 1..304 1336 88.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23273-PA 303 GL23273-PA 1..303 1..304 1293 89.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21931-PA 303 GA21931-PA 1..303 1..304 1284 89.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26363-PA 462 GM26363-PA 1..304 1..304 1602 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20885-PA 304 GD20885-PA 1..304 1..304 1611 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23059-PA 307 GJ23059-PA 1..307 1..304 1297 89.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14451-PA 304 GK14451-PA 1..304 1..304 1242 88.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24868-PA 458 GE24868-PA 1..304 1..304 1602 99 Plus