Clone LD29420 Report

Search the DGRC for LD29420

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:294
Well:20
Vector:pOT2
Associated Gene/TranscriptCG11723-RA
Protein status:LD29420.pep: gold
Preliminary Size:1962
Sequenced Size:1738

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11723 2001-01-01 Release 2 assignment
CG11723 2001-12-16 Blastp of sequenced clone
CG11723 2003-01-01 Sim4 clustering to Release 3
CG11723 2008-04-29 Release 5.5 accounting
CG11723 2008-08-15 Release 5.9 accounting
CG11723 2008-12-18 5.12 accounting

Clone Sequence Records

LD29420.complete Sequence

1738 bp (1738 high quality bases) assembled on 2001-12-16

GenBank Submission: AY070885

> LD29420.complete
CGCAATTAATCATTTATTTGTAGTGGCAAGCGAAACTGCGAGATTTAGCA
AGAGCAAGATTTTGTATATTCCACCAAAACGCAGCAAAGCAAGCCCGAAT
TTGGGATATTAAAAGTGTTACCGTCGGGTCGAAACCGCTCACACATTCGT
CGAGTTTGCTGTGAGCGCGGTCATTGCTGTGAAAATTGCGTTGAAAATTC
GGGATCCGCAAGTTTCGGAGCATTGCATTTGTGGACAAACCGCAATTTCT
GGTCCACTGCGCCATGAAATCAGATAACTACCGTCTCATACAGGAGGTGT
CCAAGCGGCGGTGCCTGTGGGACACAAACATGTCCATTTCGTACCGCAAC
CAGGACGCAGCTCTCCAGTGGGCGAGTGTCGCGCAGATAATGCAGCAGGA
TGTCTCGATCTGCAAGAAACGTTTCAAGGGAATGCGGGACAGCTACCGGG
CAGAGGTGCGCAAGATACAGCAGAAACGAATCGAGATGTCCCACTGGCCA
TACTTTCGCTCACTGGAGTTCATGCGCCAAATCTTCGATCCGGAGGGCCT
GGTGCCCTTTCCACCAGAGCCCTTCGTGATGAACACCGAGCAGCCGGAAG
TCTTCGAGCCCACCCGACTGGTTGACTTCGCTATCGATTTGGATTTGGAC
AATGATGACTCTGTTGACTTTGAAATCATCGAGGACATATTTAAGCGGGA
GCCGTCAGTGCCCCAGGACTCTGGCTCGGATAAAGGCTCGCTGATCAAGC
CTTTGGATTCTTCATCCTCGGGCGCCCATCGTTCCGATCAGGATCTATCG
CCCACATTGCCCATACACTTGCCGCGCCACCAACAATTCCTGCCACGTCC
ACCCCCGCCTTCGAAGAGAGGACGTCGGAGGAAAACTTCGCCGTCTAACG
ATGTCCCCTTATTGAATGGATACGCCAGCCAGGCGTCAAAGTCTACCACT
GAACCCGATCTAAAGAACGATTCGGACTTGAGTTTCTTGATGAGCATGAT
GCCGCACGTAAAGTCTCTGTCAGCCATTAGCAATCTTAAGTTTCGAATGG
AGATGGCGCGCGTTCTGGTGGAACTCAGGGAGGAGGATCAGCACATGCTC
GCGGCGGCGGGACCCGAAGACGTTCTAGAGCGCAGCATGCCCAAACTAAC
ACCAGCCCCGAATTCCAGTTTTGCCACTCAGCTGGAGAAATCCCAGTACC
ATCTATCCAATTCCAGCTACCAAATCAGTAGCCGAAAAACACCAACTTCG
TTTGACTATGTCGACAGCTCCATGGTTGAGTGCGATGTCAAGATAGAGAA
TGAGCCTCTGCTATGAAGACTTCATACCAAATTTTTACGATTTTACATTC
ACCAATAATTCTCTAAGGAGTATTCCTTTCATATTGTTACAAGTCTTAGA
TGAAACCCTACTCATACATGAGTAGTTGTTTGGCAAAATGCCTATCATAA
GACCATTATCCACACGCTGAATTGCTTGTAAAATATTGATTTGTATTGTC
CAATAATTTAACCATTTTGACTCCGGGTATGCCATTCGCGGGCTGTTTTA
AAGCAATTTACACGAAATGGAATATACAAACAAAATAACAGCTGATGCTG
ATTAAATTTTAAGGTTTAGCTTATCATTGGGATGTCATCTGGAAGGAATT
TTAATGGATTTGAATTGATTTAAGATTCTGTTTTCGAATAGACACGTAAT
AAATATGTGCATACGATTTAAAAAAAAAAAAAAAAAAA

LD29420.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11723-RA 1971 CG11723-RA 59..1783 1..1725 8625 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2145240..2146557 1719..402 6560 99.8 Minus
chr2L 23010047 chr2L 2146629..2147030 402..1 2010 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2145491..2146814 1725..402 6620 100 Minus
2L 23513712 2L 2146886..2147287 402..1 2010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2145491..2146814 1725..402 6620 100 Minus
2L 23513712 2L 2146886..2147287 402..1 2010 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:42:52 has no hits.

LD29420.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:43:55 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2145240..2146556 403..1719 99 <- Minus
chr2L 2146629..2147030 1..402 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:48 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
CG11723-RA 1..1053 264..1316 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:10 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
CG11723-RA 1..1053 264..1316 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:14 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
CG11723-RA 1..1053 264..1316 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:41 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
CG11723-RA 1..1053 264..1316 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:19 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
CG11723-RA 1..1053 264..1316 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:28:50 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
CG11723-RA 1..1719 1..1719 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:10 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
CG11723-RA 1..1719 1..1719 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:14 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
CG11723-RA 1..1707 13..1719 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:41 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
CG11723-RA 1..1719 1..1719 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:19 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
CG11723-RA 1..1707 13..1719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:43:55 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2145497..2146813 403..1719 100 <- Minus
2L 2146886..2147287 1..402 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:43:55 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2145497..2146813 403..1719 100 <- Minus
2L 2146886..2147287 1..402 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:43:55 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2145497..2146813 403..1719 100 <- Minus
2L 2146886..2147287 1..402 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:14 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2146886..2147287 1..402 100   Minus
arm_2L 2145497..2146813 403..1719 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:29 Download gff for LD29420.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2146886..2147287 1..402 100   Minus
2L 2145497..2146813 403..1719 100 <- Minus

LD29420.pep Sequence

Translation from 263 to 1315

> LD29420.pep
MKSDNYRLIQEVSKRRCLWDTNMSISYRNQDAALQWASVAQIMQQDVSIC
KKRFKGMRDSYRAEVRKIQQKRIEMSHWPYFRSLEFMRQIFDPEGLVPFP
PEPFVMNTEQPEVFEPTRLVDFAIDLDLDNDDSVDFEIIEDIFKREPSVP
QDSGSDKGSLIKPLDSSSSGAHRSDQDLSPTLPIHLPRHQQFLPRPPPPS
KRGRRRKTSPSNDVPLLNGYASQASKSTTEPDLKNDSDLSFLMSMMPHVK
SLSAISNLKFRMEMARVLVELREEDQHMLAAAGPEDVLERSMPKLTPAPN
SSFATQLEKSQYHLSNSSYQISSRKTPTSFDYVDSSMVECDVKIENEPLL
*

LD29420.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15306-PA 378 GF15306-PA 1..378 1..350 867 54 Plus
Dana\GF19458-PA 357 GF19458-PA 23..112 1..91 180 35.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24555-PA 344 GG24555-PA 1..344 1..350 1571 84.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11477-PA 339 GH11477-PA 1..339 1..350 697 45.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11723-PB 350 CG11723-PB 1..350 1..350 1814 100 Plus
CG11723-PA 350 CG11723-PA 1..350 1..350 1814 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16972-PA 340 GI16972-PA 1..339 1..349 666 42.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19421-PA 350 GL19421-PA 1..350 1..350 711 46.8 Plus
Dper\GL22159-PA 282 GL22159-PA 2..282 4..350 435 36.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11162-PA 349 GA11162-PA 1..349 1..350 698 46.1 Plus
Dpse\GA28255-PA 282 GA28255-PA 2..282 4..350 381 34.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23685-PA 350 GM23685-PA 1..350 1..350 1759 94.6 Plus
Dsec\GM22560-PA 294 GM22560-PA 18..243 8..278 172 25.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22872-PA 350 GD22872-PA 1..350 1..350 1761 94.6 Plus
Dsim\GD17225-PA 254 GD17225-PA 18..243 8..278 168 24.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17218-PA 343 GJ17218-PA 1..343 1..350 746 48.2 Plus
Dvir\GJ16492-PA 197 GJ16492-PA 1..130 1..131 196 34.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14997-PA 365 GK14997-PA 1..365 1..350 615 42.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15225-PA 350 GE15225-PA 1..350 1..350 1592 85.4 Plus
Dyak\GE17202-PA 245 GE17202-PA 9..245 7..280 165 25 Plus

LD29420.hyp Sequence

Translation from 263 to 1315

> LD29420.hyp
MKSDNYRLIQEVSKRRCLWDTNMSISYRNQDAALQWASVAQIMQQDVSIC
KKRFKGMRDSYRAEVRKIQQKRIEMSHWPYFRSLEFMRQIFDPEGLVPFP
PEPFVMNTEQPEVFEPTRLVDFAIDLDLDNDDSVDFEIIEDIFKREPSVP
QDSGSDKGSLIKPLDSSSSGAHRSDQDLSPTLPIHLPRHQQFLPRPPPPS
KRGRRRKTSPSNDVPLLNGYASQASKSTTEPDLKNDSDLSFLMSMMPHVK
SLSAISNLKFRMEMARVLVELREEDQHMLAAAGPEDVLERSMPKLTPAPN
SSFATQLEKSQYHLSNSSYQISSRKTPTSFDYVDSSMVECDVKIENEPLL
*

LD29420.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11723-PB 350 CG11723-PB 1..350 1..350 1814 100 Plus
CG11723-PA 350 CG11723-PA 1..350 1..350 1814 100 Plus