Clone LD29458 Report

Search the DGRC for LD29458

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:294
Well:58
Vector:pOT2
Associated Gene/TranscriptBap55-RA
Protein status:LD29458.pep: gold
Preliminary Size:1675
Sequenced Size:1468

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6546 2001-01-01 Release 2 assignment
CG6546 2001-12-16 Blastp of sequenced clone
CG6546 2003-01-01 Sim4 clustering to Release 3
Bap55 2008-04-29 Release 5.5 accounting
Bap55 2008-08-15 Release 5.9 accounting
Bap55 2008-12-18 5.12 accounting

Clone Sequence Records

LD29458.complete Sequence

1468 bp (1468 high quality bases) assembled on 2001-12-16

GenBank Submission: AY070886

> LD29458.complete
CGTCGTGAAAAAAGCCGCAAAATATACACAGACGGAAGTATTTTCGCGAA
TTACTTGAACACAACGTGCGAAAAAAATAATCGGAACGCCCCAATATGAG
TGGCGGCACCATGCTATATGGCGGCGACGAGATCGGCGCCCTGGTCTTCG
ATCCTGGACATCATTCCTTGCGAGTGGGCTACGCACAGGAGGATTCGCCC
AAGGCGGAGATACCCTCGGTTGTGGGGATTGGAGCAGCTCCAGAGACCAA
TCTCGATCCGGAAACTAAAACAGACAACAATGCCACGCCAAATAATGCTG
ACCAGCGCAAGTTCTATGTGGACACCAACTACGTGACCGTTCCCCGTTCC
AATATGGAGGTGCAGACCTATATGAAAGACGGCATGATTGACAACTGGGA
CCTGTTTGAGAAGGTTATTGATTATGCCTACGCCAATGTCATTCAGTCGG
AGCCGGAATACCATCCCGTGCTCTTTTCCGAGGCATCGTGGAATGTCCGC
AACAACCGCGAGAAGCTAACCGAGCTTATGTTCGAGAAGTACAATGTTCC
AGCCTTCTTTCTGGTAAAGAACGCCGTTCTGGCTGCCTTCTCCAGCGGGC
GGGCCACCGCTTTGGTTGTCGATAGTGGAGCCACCCACACCTCGGCCGTT
CCCGTCCATGAGGGCTATGTCCTATCCCAGGCGGTGGTTAAGTCACCCCT
GGGTGGAGACTTCCTTTCACGACAGTGCCGCCAGCATCTGGAGAAGCACG
GCATTGATCTGTCGCCGGTATACAAGATTGCCTCCAAAGACGTTGTTAAG
GAGCGCGACAACGGACGCTTCACGCTGCGCAAACTGCCAGAGAACCTAAC
TCAGTCGTGGCAAAACTACATGTTGCAGCTCATGATGCAAGACTTTCAGA
TGAATGTGCTGCAGGTCCTAGAAAATCCGTTCGACGAACGGGTTGCTGCT
CAAATCCCGACGGTACACTATGAGTTTCCTAATGGTTATCATCAGGACTT
TGGCTCTGAGCGGTTCAAGATAGCCGAGAGTCTCTTTGACAATGCAATGC
TGGGAGCTGGCCAATTGGCGTCCACCAGTGTGGGCATGTGTGATGCGGAT
GTGCGGCTGTCACTTTTCGGCTCAGTTGTCGTTACTGGTGGCAATACCCT
TCTGCAAGGCTTTCCGGAGCGCCTAAATCGCGATCTCCAGCTGCGTGCCC
CCTCAAATACGCGCCTAAAAATGATTTCTGCCAATGGCAGCGTGGAGCGA
AGATTTGGAGCCTGGATTGGCGGCTCTATTCTAGCCAGCATAGGTACTTT
CCAACAGATGTGGATATCGTCGCAGGAGTACGAAGAGGCCGGCAAGAGCC
AAGTCGAGCGGAAGTGTCCGTAAGGACAGCGCAATCGAATTCCAATTTTA
ATTTTAAAGACGCAACTCTATGTAATAATATAAATGTGAAATGTGAAAAA
AAAAAAAAAAAAAAAAAA

LD29458.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Bap55-RA 1511 Bap55-RA 29..1477 1..1449 7245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13316782..13317626 1139..295 4225 100 Minus
chr2R 21145070 chr2R 13316417..13316725 1445..1137 1545 100 Minus
chr2R 21145070 chr2R 13317706..13317999 294..1 1470 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17429718..17430562 1139..295 4225 100 Minus
2R 25286936 2R 17429349..17429661 1449..1137 1565 100 Minus
2R 25286936 2R 17430642..17430935 294..1 1470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17430917..17431761 1139..295 4225 100 Minus
2R 25260384 2R 17430548..17430860 1449..1137 1565 100 Minus
2R 25260384 2R 17431841..17432134 294..1 1470 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:25:51 has no hits.

LD29458.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:26:56 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13316417..13316724 1138..1445 100 <- Minus
chr2R 13316784..13317626 295..1137 100 <- Minus
chr2R 13317706..13317999 1..294 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:51 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
Bap55-RA 1..1278 96..1373 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:12 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
Bap55-RA 1..1278 96..1373 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:36:20 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
Bap55-RA 1..1278 96..1373 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:42 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
Bap55-RA 1..1278 96..1373 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:10:06 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
Bap55-RA 1..1278 96..1373 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:28:52 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
Bap55-RA 1..1445 1..1445 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:11 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
Bap55-RA 1..1445 1..1445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:36:20 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
Bap55-RA 29..1473 1..1445 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:42 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
Bap55-RA 1..1445 1..1445 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:10:06 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
Bap55-RA 29..1473 1..1445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:26:56 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17429353..17429660 1138..1445 100 <- Minus
2R 17429720..17430562 295..1137 100 <- Minus
2R 17430642..17430935 1..294 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:26:56 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17429353..17429660 1138..1445 100 <- Minus
2R 17429720..17430562 295..1137 100 <- Minus
2R 17430642..17430935 1..294 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:26:56 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17429353..17429660 1138..1445 100 <- Minus
2R 17429720..17430562 295..1137 100 <- Minus
2R 17430642..17430935 1..294 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:36:20 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13316858..13317165 1138..1445 100 <- Minus
arm_2R 13317225..13318067 295..1137 100 <- Minus
arm_2R 13318147..13318440 1..294 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:30 Download gff for LD29458.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17430552..17430859 1138..1445 100 <- Minus
2R 17430919..17431761 295..1137 100 <- Minus
2R 17431841..17432134 1..294 100   Minus

LD29458.hyp Sequence

Translation from 95 to 1372

> LD29458.hyp
MSGGTMLYGGDEIGALVFDPGHHSLRVGYAQEDSPKAEIPSVVGIGAAPE
TNLDPETKTDNNATPNNADQRKFYVDTNYVTVPRSNMEVQTYMKDGMIDN
WDLFEKVIDYAYANVIQSEPEYHPVLFSEASWNVRNNREKLTELMFEKYN
VPAFFLVKNAVLAAFSSGRATALVVDSGATHTSAVPVHEGYVLSQAVVKS
PLGGDFLSRQCRQHLEKHGIDLSPVYKIASKDVVKERDNGRFTLRKLPEN
LTQSWQNYMLQLMMQDFQMNVLQVLENPFDERVAAQIPTVHYEFPNGYHQ
DFGSERFKIAESLFDNAMLGAGQLASTSVGMCDADVRLSLFGSVVVTGGN
TLLQGFPERLNRDLQLRAPSNTRLKMISANGSVERRFGAWIGGSILASIG
TFQQMWISSQEYEEAGKSQVERKCP*

LD29458.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Bap55-PA 425 CG6546-PA 1..425 1..425 2214 100 Plus
Act87E-PC 376 CG18290-PC 4..375 11..424 581 32.9 Plus
Act87E-PB 376 CG18290-PB 4..375 11..424 581 32.9 Plus
Act87E-PA 376 CG18290-PA 4..375 11..424 581 32.9 Plus
Act42A-PA 376 CG12051-PA 4..375 11..424 577 32.2 Plus

LD29458.pep Sequence

Translation from 95 to 1372

> LD29458.pep
MSGGTMLYGGDEIGALVFDPGHHSLRVGYAQEDSPKAEIPSVVGIGAAPE
TNLDPETKTDNNATPNNADQRKFYVDTNYVTVPRSNMEVQTYMKDGMIDN
WDLFEKVIDYAYANVIQSEPEYHPVLFSEASWNVRNNREKLTELMFEKYN
VPAFFLVKNAVLAAFSSGRATALVVDSGATHTSAVPVHEGYVLSQAVVKS
PLGGDFLSRQCRQHLEKHGIDLSPVYKIASKDVVKERDNGRFTLRKLPEN
LTQSWQNYMLQLMMQDFQMNVLQVLENPFDERVAAQIPTVHYEFPNGYHQ
DFGSERFKIAESLFDNAMLGAGQLASTSVGMCDADVRLSLFGSVVVTGGN
TLLQGFPERLNRDLQLRAPSNTRLKMISANGSVERRFGAWIGGSILASIG
TFQQMWISSQEYEEAGKSQVERKCP*

LD29458.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11785-PA 425 GF11785-PA 1..425 1..425 2275 98.8 Plus
Dana\GF17602-PA 376 GF17602-PA 4..375 11..424 606 32.9 Plus
Dana\GF13827-PA 376 GF13827-PA 4..375 11..424 601 32.9 Plus
Dana\GF12208-PA 376 GF12208-PA 4..375 11..424 600 32.7 Plus
Dana\GF18300-PA 376 GF18300-PA 4..375 11..424 592 32.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22198-PA 425 GG22198-PA 1..425 1..425 2298 100 Plus
Dere\GG19688-PA 376 GG19688-PA 4..375 11..424 606 32.9 Plus
Dere\GG10840-PA 376 GG10840-PA 4..375 11..424 601 32.9 Plus
Dere\GG18797-PA 376 GG18797-PA 4..375 11..424 600 32.9 Plus
Dere\GG22068-PA 376 GG22068-PA 4..375 11..424 600 32.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20488-PA 434 GH20488-PA 1..434 1..425 2188 94 Plus
Dgri\GH19045-PA 376 GH19045-PA 4..375 11..424 606 32.9 Plus
Dgri\GH24372-PA 376 GH24372-PA 4..375 11..424 600 32.9 Plus
Dgri\GH22007-PA 376 GH22007-PA 4..375 11..424 600 32.7 Plus
Dgri\GH20408-PA 376 GH20408-PA 4..375 11..424 598 32.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Bap55-PA 425 CG6546-PA 1..425 1..425 2214 100 Plus
Act87E-PC 376 CG18290-PC 4..375 11..424 581 32.9 Plus
Act87E-PB 376 CG18290-PB 4..375 11..424 581 32.9 Plus
Act87E-PA 376 CG18290-PA 4..375 11..424 581 32.9 Plus
Act42A-PA 376 CG12051-PA 4..375 11..424 577 32.2 Plus
Act57B-PA 376 CG10067-PA 4..375 11..424 575 32.7 Plus
Act5C-PE 376 CG4027-PE 4..375 11..424 575 32.2 Plus
Act5C-PD 376 CG4027-PD 4..375 11..424 575 32.2 Plus
Act5C-PC 376 CG4027-PC 4..375 11..424 575 32.2 Plus
Act5C-PA 376 CG4027-PA 4..375 11..424 575 32.2 Plus
Act5C-PB 376 CG4027-PB 4..375 11..424 575 32.2 Plus
Act88F-PA 376 CG5178-PA 4..375 11..424 567 32.5 Plus
Act79B-PB 376 CG7478-PB 4..375 11..424 563 32.7 Plus
Act79B-PA 376 CG7478-PA 4..375 11..424 563 32.7 Plus
Arp53D-PB 411 CG5409-PB 48..410 15..424 522 32.5 Plus
Arp1-PA 376 CG6174-PA 12..374 16..423 437 27.3 Plus
Arp3-PB 418 CG7558-PB 7..406 15..418 351 24.1 Plus
Arp3-PA 418 CG7558-PA 7..406 15..418 351 24.1 Plus
Arp2-PB 394 CG9901-PB 9..388 16..422 319 25.4 Plus
Arp2-PA 394 CG9901-PA 9..388 16..422 319 25.4 Plus
Arp2-PC 399 CG9901-PC 9..393 16..422 315 26 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21032-PA 426 GI21032-PA 1..426 1..425 2211 96.5 Plus
Dmoj\GI24339-PA 376 GI24339-PA 4..375 11..424 606 32.9 Plus
Dmoj\GI19595-PA 376 GI19595-PA 4..375 11..424 605 33.2 Plus
Dmoj\GI15312-PA 376 GI15312-PA 4..375 11..424 600 32.9 Plus
Dmoj\GI19711-PA 376 GI19711-PA 4..375 11..424 600 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10665-PA 427 GL10665-PA 1..427 1..425 2216 95.8 Plus
Dper\GL26327-PA 376 GL26327-PA 4..375 11..424 608 32.9 Plus
Dper\GL14888-PA 376 GL14888-PA 4..375 11..424 600 32.9 Plus
Dper\GL17061-PA 376 GL17061-PA 4..375 11..424 600 32.7 Plus
Dper\GL17787-PA 376 GL17787-PA 4..375 11..424 598 32.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19676-PA 427 GA19676-PA 1..427 1..425 2216 95.8 Plus
Dpse\GA14877-PB 376 GA14877-PB 4..375 11..424 606 32.9 Plus
Dpse\GA14877-PA 376 GA14877-PA 4..375 11..424 606 32.9 Plus
Dpse\GA17886-PA 376 GA17886-PA 4..375 11..424 600 32.9 Plus
Dpse\GA24346-PA 376 GA24346-PA 4..375 11..424 600 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19984-PA 425 GM19984-PA 1..425 1..425 2298 100 Plus
Dsec\GM16492-PA 376 GM16492-PA 4..375 11..424 601 32.9 Plus
Dsec\GM24109-PA 376 GM24109-PA 4..375 11..424 600 32.7 Plus
Dsec\GM12447-PA 376 GM12447-PA 4..375 11..424 600 32.9 Plus
Dsec\GM22426-PA 376 GM22426-PA 4..375 11..424 588 32.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25481-PA 425 GD25481-PA 1..425 1..425 2298 100 Plus
Dsim\GD18909-PA 376 GD18909-PA 4..375 11..424 606 32.9 Plus
Dsim\GD10342-PA 376 GD10342-PA 4..375 11..424 601 32.9 Plus
Dsim\GD16764-PA 376 GD16764-PA 4..375 11..424 600 32.9 Plus
Dsim\GD11548-PA 376 GD11548-PA 4..375 11..424 600 32.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21958-PA 426 GJ21958-PA 1..426 1..425 2208 96 Plus
Dvir\ActE1-PA 376 GJ10425-PA 4..375 11..424 606 32.9 Plus
Dvir\GJ18395-PA 376 GJ18395-PA 4..375 11..424 605 33.2 Plus
Dvir\GJ14747-PA 376 GJ14747-PA 4..375 11..424 600 32.9 Plus
Dvir\ActC2-PA 376 GJ17479-PA 4..375 11..424 600 32.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17246-PA 428 GK17246-PA 1..428 1..425 2213 96 Plus
Dwil\GK13943-PA 376 GK13943-PA 4..375 11..424 606 32.9 Plus
Dwil\GK21751-PA 376 GK21751-PA 4..375 11..424 601 32.9 Plus
Dwil\GK20124-PA 376 GK20124-PA 4..375 11..424 600 32.9 Plus
Dwil\GK23336-PA 376 GK23336-PA 4..375 11..424 600 32.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14195-PA 425 GE14195-PA 1..425 1..425 2295 99.8 Plus
Dyak\GE26273-PA 376 GE26273-PA 4..375 11..424 606 32.9 Plus
Dyak\Act57B-PA 376 GE17558-PA 4..375 11..424 600 32.9 Plus
Dyak\GE12149-PA 376 GE12149-PA 4..375 11..424 600 32.7 Plus
Dyak\GE19434-PA 376 GE19434-PA 4..375 11..424 597 32.7 Plus