BDGP Sequence Production Resources |
Search the DGRC for LD29477
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 294 |
Well: | 77 |
Vector: | pOT2 |
Associated Gene/Transcript | rumi-RA |
Protein status: | LD29477.pep: gold |
Preliminary Size: | 1711 |
Sequenced Size: | 1519 |
Gene | Date | Evidence |
---|---|---|
CG17138 | 2001-01-01 | Release 2 assignment |
CG31152 | 2001-11-29 | Blastp of sequenced clone |
rumi | 2008-04-29 | Release 5.5 accounting |
rumi | 2008-08-15 | Release 5.9 accounting |
rumi | 2008-12-18 | 5.12 accounting |
1519 bp (1519 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069564
> LD29477.complete CCGCAATCAAAGGCCAACAAATTTGTTTACATCCAAAGAAATGCTAATAA ATCATTTAATAGTCGTATTATTAATTAGTTTGGTAGGAACAGGAGGTGCA GAAGATGACGGACTTTGCAGTGCCGATCAAAAATCCTGTGCACAAAGTGA ACCCGACCAAATAAACGAGGATGAATTTAGCTTCAAGATACGTCGCCAGA TCGAAAAAGCCAATGCCGACTACAAGCCGTGCAGCAGTGATCCCCAGGAC AGCGACTGCTCCTGCCACGCAAATGTTCTGAAACGGGATCTCGCGCCCTA CAAGTCAACAGGTGTCACCCGGCAGATGATCGAGAGTTCAGCGCGTTACG GCACCAAATACAAGATCTACGGACATCGCCTGTACCGGGATGCCAACTGC ATGTTCCCAGCCCGCTGTGAGGGCATTGAACACTTCCTGCTGCCGCTGGT GGCTACGCTGCCCGACATGGACTTGATCATCAATACCAGGGACTATCCGC AGCTGAATGCGGCGTGGGGTAACGCGGCTGGTGGTCCCGTCTTCTCCTTC TCCAAGACAAAGGAGTACCGCGACATCATGTATCCAGCGTGGACATTCTG GGCCGGAGGACCGGCCACCAAGCTCCATCCTCGTGGCATTGGACGCTGGG ATCAGATGCGCGAGAAGCTGGAGAAGCGAGCGGCAGCTATACCCTGGTCA CAGAAACGCAGTCTGGGCTTCTTTCGCGGTTCACGCACCTCGGACGAACG TGATTCTCTTATTCTGCTCTCGCGCCGCAATCCGGAGCTAGTCGAGGCTC AATACACCAAAAATCAGGGCTGGAAGTCGCCTAAGGATACACTGGACGCA CCGGCTGCTGATGAGGTGTCCTTCGAGGACCACTGCAAGTACAAGTACTT GTTCAATTTCCGCGGTGTGGCCGCCAGTTTTCGTCTGAAGCACTTGTTCC TCTGCAAGTCGCTGGTCTTCCATGTGGGCGACGAGTGGCAGGAGTTCTTC TACGACCAACTAAAGCCCTGGGTGCACTATGTGCCGCTCAAGAGCTACCC CAGTCAGCAGGAGTACGAGCACATCTTGTCCTTTTTCAAGAAAAACGATG CGCTGGCCCAGGAGATCGCTCAGCGTGGATACGACTTCATCTGGGAGCAT TTGCGCATGAAGGACATCAAGTGCTATTGGCGCAAGCTGCTCAAGCGATA TGTGAAGCTGCTGCAATACGAGGTTAAGCCGGAGGATCAACTTATTTACA TAGGGCCTAAAAAGGATGAGCTGTAGCGAAATGAAATGTTATTGTGTTTA AGCATTTCTCATTTTGTATTAAGTTGCTTAGAGCAGCGTGAATCTCTCTG TCCGCATTCCATGCATTTTTGATGTCCAAGATTTAGAGAACAACTCGAAT ATTTTCCTATTTATATATATAGCATTTATACAATCTTTATAACAATCGAA AGCCATTTGTTTTAAGACTCAAAGTTTAAAATATATTTGGAAGAAATATG TAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rumi-RA | 1503 | rumi-RA | 3..1503 | 1..1501 | 7505 | 100 | Plus |
CG31139.b | 1265 | CG31139.b | 857..990 | 893..1026 | 325 | 82.8 | Plus |
CG31139-RA | 1279 | CG31139-RA | 861..994 | 893..1026 | 325 | 82.8 | Plus |
CG31139.b | 1265 | CG31139.b | 1..46 | 1459..1504 | 230 | 100 | Plus |
CG31139-RA | 1279 | CG31139-RA | 1..46 | 1459..1504 | 230 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 18572493..18573815 | 1501..177 | 6335 | 98.7 | Minus |
chr3R | 27901430 | chr3R | 18573866..18574041 | 176..1 | 880 | 100 | Minus |
chr3R | 27901430 | chr3R | 18571487..18571620 | 1026..893 | 325 | 82.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 22749011..22750338 | 1504..177 | 6640 | 100 | Minus |
3R | 32079331 | 3R | 22750389..22750564 | 176..1 | 880 | 100 | Minus |
3R | 32079331 | 3R | 22748008..22748141 | 1026..893 | 325 | 82.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 22489842..22491169 | 1504..177 | 6640 | 100 | Minus |
3R | 31820162 | 3R | 22491220..22491395 | 176..1 | 880 | 100 | Minus |
3R | 31820162 | 3R | 22488839..22488972 | 1026..893 | 325 | 82.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18572493..18573815 | 177..1501 | 98 | <- | Minus |
chr3R | 18573866..18574041 | 1..176 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rumi-RA | 1..1236 | 41..1276 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rumi-RA | 1..1236 | 41..1276 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rumi-RA | 1..1236 | 41..1276 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rumi-RA | 1..1236 | 41..1276 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rumi-RA | 1..1236 | 41..1276 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rumi-RA | 1..1498 | 4..1501 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rumi-RA | 1..1498 | 4..1501 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rumi-RA | 34..1534 | 1..1501 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rumi-RA | 1..1498 | 4..1501 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rumi-RA | 34..1534 | 1..1501 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22749014..22750338 | 177..1501 | 100 | <- | Minus |
3R | 22750389..22750564 | 1..176 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22749014..22750338 | 177..1501 | 100 | <- | Minus |
3R | 22750389..22750564 | 1..176 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22749014..22750338 | 177..1501 | 100 | <- | Minus |
3R | 22750389..22750564 | 1..176 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18574736..18576060 | 177..1501 | 100 | <- | Minus |
arm_3R | 18576111..18576286 | 1..176 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22491220..22491395 | 1..176 | 100 | Minus | |
3R | 22489845..22491169 | 177..1501 | 100 | <- | Minus |
Translation from 0 to 1275
> LD29477.hyp RNQRPTNLFTSKEMLINHLIVVLLISLVGTGGAEDDGLCSADQKSCAQSE PDQINEDEFSFKIRRQIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPY KSTGVTRQMIESSARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLV ATLPDMDLIINTRDYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFW AGGPATKLHPRGIGRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDER DSLILLSRRNPELVEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYL FNFRGVAASFRLKHLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYP SQQEYEHILSFFKKNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRY VKLLQYEVKPEDQLIYIGPKKDEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rumi-PA | 411 | CG31152-PA | 1..411 | 14..424 | 2222 | 100 | Plus |
rumi-PB | 316 | CG31152-PB | 1..316 | 109..424 | 1724 | 100 | Plus |
CG31139-PA | 397 | CG31139-PA | 22..389 | 39..421 | 952 | 47.4 | Plus |
CG31139-PC | 312 | CG31139-PC | 1..304 | 109..421 | 870 | 50.6 | Plus |
Translation from 40 to 1275
> LD29477.pep MLINHLIVVLLISLVGTGGAEDDGLCSADQKSCAQSEPDQINEDEFSFKI RRQIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPYKSTGVTRQMIESS ARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATLPDMDLIINTR DYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPEL VEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLK HLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYPSQQEYEHILSFFK KNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRYVKLLQYEVKPEDQ LIYIGPKKDEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18286-PA | 411 | GF18286-PA | 1..411 | 1..411 | 1847 | 81 | Plus |
Dana\GF18287-PA | 382 | GF18287-PA | 23..365 | 53..398 | 960 | 50.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12485-PA | 411 | GG12485-PA | 1..411 | 1..411 | 2143 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18344-PA | 408 | GH18344-PA | 18..401 | 32..405 | 1451 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rumi-PA | 411 | CG31152-PA | 1..411 | 1..411 | 2222 | 100 | Plus |
rumi-PB | 316 | CG31152-PB | 1..316 | 96..411 | 1724 | 100 | Plus |
CG31139-PA | 397 | CG31139-PA | 22..389 | 26..408 | 952 | 47.4 | Plus |
CG31139-PC | 312 | CG31139-PC | 1..304 | 96..408 | 870 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10779-PA | 406 | GI10779-PA | 4..406 | 8..411 | 1535 | 68.6 | Plus |
Dmoj\GI18870-PA | 270 | GI18870-PA | 1..236 | 143..387 | 233 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23774-PA | 409 | GL23774-PA | 1..409 | 1..411 | 1832 | 80.5 | Plus |
Dper\GL23775-PA | 419 | GL23775-PA | 18..384 | 25..404 | 934 | 46.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16050-PA | 409 | GA16050-PA | 1..409 | 1..411 | 1843 | 81.6 | Plus |
Dpse\GA27052-PA | 420 | GA27052-PA | 18..384 | 25..404 | 928 | 46.2 | Plus |
Dpse\GA28684-PA | 270 | GA28684-PA | 1..245 | 143..396 | 273 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23615-PA | 411 | GM23615-PA | 1..411 | 1..411 | 2196 | 98.5 | Plus |
Dsec\GM23616-PA | 404 | GM23616-PA | 22..389 | 26..408 | 935 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18424-PA | 411 | GD18424-PA | 1..411 | 1..411 | 2193 | 98.1 | Plus |
Dsim\GD18425-PA | 404 | GD18425-PA | 22..389 | 26..408 | 939 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14378-PA | 410 | GJ14378-PA | 20..410 | 16..411 | 1539 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11622-PA | 377 | GK11622-PA | 14..377 | 49..411 | 1617 | 79.7 | Plus |
Dwil\GK11623-PA | 383 | GK11623-PA | 24..373 | 38..407 | 998 | 49.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24006-PA | 411 | GE24006-PA | 1..411 | 1..411 | 2143 | 95.6 | Plus |