Clone LD29477 Report

Search the DGRC for LD29477

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:294
Well:77
Vector:pOT2
Associated Gene/Transcriptrumi-RA
Protein status:LD29477.pep: gold
Preliminary Size:1711
Sequenced Size:1519

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17138 2001-01-01 Release 2 assignment
CG31152 2001-11-29 Blastp of sequenced clone
rumi 2008-04-29 Release 5.5 accounting
rumi 2008-08-15 Release 5.9 accounting
rumi 2008-12-18 5.12 accounting

Clone Sequence Records

LD29477.complete Sequence

1519 bp (1519 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069564

> LD29477.complete
CCGCAATCAAAGGCCAACAAATTTGTTTACATCCAAAGAAATGCTAATAA
ATCATTTAATAGTCGTATTATTAATTAGTTTGGTAGGAACAGGAGGTGCA
GAAGATGACGGACTTTGCAGTGCCGATCAAAAATCCTGTGCACAAAGTGA
ACCCGACCAAATAAACGAGGATGAATTTAGCTTCAAGATACGTCGCCAGA
TCGAAAAAGCCAATGCCGACTACAAGCCGTGCAGCAGTGATCCCCAGGAC
AGCGACTGCTCCTGCCACGCAAATGTTCTGAAACGGGATCTCGCGCCCTA
CAAGTCAACAGGTGTCACCCGGCAGATGATCGAGAGTTCAGCGCGTTACG
GCACCAAATACAAGATCTACGGACATCGCCTGTACCGGGATGCCAACTGC
ATGTTCCCAGCCCGCTGTGAGGGCATTGAACACTTCCTGCTGCCGCTGGT
GGCTACGCTGCCCGACATGGACTTGATCATCAATACCAGGGACTATCCGC
AGCTGAATGCGGCGTGGGGTAACGCGGCTGGTGGTCCCGTCTTCTCCTTC
TCCAAGACAAAGGAGTACCGCGACATCATGTATCCAGCGTGGACATTCTG
GGCCGGAGGACCGGCCACCAAGCTCCATCCTCGTGGCATTGGACGCTGGG
ATCAGATGCGCGAGAAGCTGGAGAAGCGAGCGGCAGCTATACCCTGGTCA
CAGAAACGCAGTCTGGGCTTCTTTCGCGGTTCACGCACCTCGGACGAACG
TGATTCTCTTATTCTGCTCTCGCGCCGCAATCCGGAGCTAGTCGAGGCTC
AATACACCAAAAATCAGGGCTGGAAGTCGCCTAAGGATACACTGGACGCA
CCGGCTGCTGATGAGGTGTCCTTCGAGGACCACTGCAAGTACAAGTACTT
GTTCAATTTCCGCGGTGTGGCCGCCAGTTTTCGTCTGAAGCACTTGTTCC
TCTGCAAGTCGCTGGTCTTCCATGTGGGCGACGAGTGGCAGGAGTTCTTC
TACGACCAACTAAAGCCCTGGGTGCACTATGTGCCGCTCAAGAGCTACCC
CAGTCAGCAGGAGTACGAGCACATCTTGTCCTTTTTCAAGAAAAACGATG
CGCTGGCCCAGGAGATCGCTCAGCGTGGATACGACTTCATCTGGGAGCAT
TTGCGCATGAAGGACATCAAGTGCTATTGGCGCAAGCTGCTCAAGCGATA
TGTGAAGCTGCTGCAATACGAGGTTAAGCCGGAGGATCAACTTATTTACA
TAGGGCCTAAAAAGGATGAGCTGTAGCGAAATGAAATGTTATTGTGTTTA
AGCATTTCTCATTTTGTATTAAGTTGCTTAGAGCAGCGTGAATCTCTCTG
TCCGCATTCCATGCATTTTTGATGTCCAAGATTTAGAGAACAACTCGAAT
ATTTTCCTATTTATATATATAGCATTTATACAATCTTTATAACAATCGAA
AGCCATTTGTTTTAAGACTCAAAGTTTAAAATATATTTGGAAGAAATATG
TAAAAAAAAAAAAAAAAAA

LD29477.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-RA 1503 rumi-RA 3..1503 1..1501 7505 100 Plus
CG31139.b 1265 CG31139.b 857..990 893..1026 325 82.8 Plus
CG31139-RA 1279 CG31139-RA 861..994 893..1026 325 82.8 Plus
CG31139.b 1265 CG31139.b 1..46 1459..1504 230 100 Plus
CG31139-RA 1279 CG31139-RA 1..46 1459..1504 230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18572493..18573815 1501..177 6335 98.7 Minus
chr3R 27901430 chr3R 18573866..18574041 176..1 880 100 Minus
chr3R 27901430 chr3R 18571487..18571620 1026..893 325 82.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22749011..22750338 1504..177 6640 100 Minus
3R 32079331 3R 22750389..22750564 176..1 880 100 Minus
3R 32079331 3R 22748008..22748141 1026..893 325 82.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22489842..22491169 1504..177 6640 100 Minus
3R 31820162 3R 22491220..22491395 176..1 880 100 Minus
3R 31820162 3R 22488839..22488972 1026..893 325 82.8 Minus
Blast to na_te.dros performed on 2019-03-15 22:26:06 has no hits.

LD29477.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:26:46 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18572493..18573815 177..1501 98 <- Minus
chr3R 18573866..18574041 1..176 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:09:55 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 1..1236 41..1276 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:25:07 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 1..1236 41..1276 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:19:51 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 1..1236 41..1276 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:52:11 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 1..1236 41..1276 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:35 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 1..1236 41..1276 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:00:53 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 1..1498 4..1501 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:25:07 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 1..1498 4..1501 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:19:51 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 34..1534 1..1501 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:52:11 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 1..1498 4..1501 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:35 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 34..1534 1..1501 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:46 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22749014..22750338 177..1501 100 <- Minus
3R 22750389..22750564 1..176 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:46 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22749014..22750338 177..1501 100 <- Minus
3R 22750389..22750564 1..176 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:46 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22749014..22750338 177..1501 100 <- Minus
3R 22750389..22750564 1..176 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:19:51 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18574736..18576060 177..1501 100 <- Minus
arm_3R 18576111..18576286 1..176 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:25 Download gff for LD29477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22491220..22491395 1..176 100   Minus
3R 22489845..22491169 177..1501 100 <- Minus

LD29477.hyp Sequence

Translation from 0 to 1275

> LD29477.hyp
RNQRPTNLFTSKEMLINHLIVVLLISLVGTGGAEDDGLCSADQKSCAQSE
PDQINEDEFSFKIRRQIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPY
KSTGVTRQMIESSARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLV
ATLPDMDLIINTRDYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFW
AGGPATKLHPRGIGRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDER
DSLILLSRRNPELVEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYL
FNFRGVAASFRLKHLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYP
SQQEYEHILSFFKKNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRY
VKLLQYEVKPEDQLIYIGPKKDEL*

LD29477.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-PA 411 CG31152-PA 1..411 14..424 2222 100 Plus
rumi-PB 316 CG31152-PB 1..316 109..424 1724 100 Plus
CG31139-PA 397 CG31139-PA 22..389 39..421 952 47.4 Plus
CG31139-PC 312 CG31139-PC 1..304 109..421 870 50.6 Plus

LD29477.pep Sequence

Translation from 40 to 1275

> LD29477.pep
MLINHLIVVLLISLVGTGGAEDDGLCSADQKSCAQSEPDQINEDEFSFKI
RRQIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPYKSTGVTRQMIESS
ARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATLPDMDLIINTR
DYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI
GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPEL
VEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLK
HLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYPSQQEYEHILSFFK
KNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRYVKLLQYEVKPEDQ
LIYIGPKKDEL*

LD29477.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18286-PA 411 GF18286-PA 1..411 1..411 1847 81 Plus
Dana\GF18287-PA 382 GF18287-PA 23..365 53..398 960 50.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12485-PA 411 GG12485-PA 1..411 1..411 2143 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18344-PA 408 GH18344-PA 18..401 32..405 1451 68.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-PA 411 CG31152-PA 1..411 1..411 2222 100 Plus
rumi-PB 316 CG31152-PB 1..316 96..411 1724 100 Plus
CG31139-PA 397 CG31139-PA 22..389 26..408 952 47.4 Plus
CG31139-PC 312 CG31139-PC 1..304 96..408 870 50.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10779-PA 406 GI10779-PA 4..406 8..411 1535 68.6 Plus
Dmoj\GI18870-PA 270 GI18870-PA 1..236 143..387 233 28.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23774-PA 409 GL23774-PA 1..409 1..411 1832 80.5 Plus
Dper\GL23775-PA 419 GL23775-PA 18..384 25..404 934 46.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16050-PA 409 GA16050-PA 1..409 1..411 1843 81.6 Plus
Dpse\GA27052-PA 420 GA27052-PA 18..384 25..404 928 46.2 Plus
Dpse\GA28684-PA 270 GA28684-PA 1..245 143..396 273 30.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23615-PA 411 GM23615-PA 1..411 1..411 2196 98.5 Plus
Dsec\GM23616-PA 404 GM23616-PA 22..389 26..408 935 45.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18424-PA 411 GD18424-PA 1..411 1..411 2193 98.1 Plus
Dsim\GD18425-PA 404 GD18425-PA 22..389 26..408 939 45.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14378-PA 410 GJ14378-PA 20..410 16..411 1539 71 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11622-PA 377 GK11622-PA 14..377 49..411 1617 79.7 Plus
Dwil\GK11623-PA 383 GK11623-PA 24..373 38..407 998 49.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24006-PA 411 GE24006-PA 1..411 1..411 2143 95.6 Plus