BDGP Sequence Production Resources |
Search the DGRC for LD29542
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 295 |
Well: | 42 |
Vector: | pOT2 |
Associated Gene/Transcript | Rbsn-5-RA |
Protein status: | LD29542.pep: gold |
Preliminary Size: | 2005 |
Sequenced Size: | 1840 |
Gene | Date | Evidence |
---|---|---|
CG8506 | 2001-01-01 | Release 2 assignment |
CG8506 | 2001-10-10 | Blastp of sequenced clone |
CG8506 | 2003-01-01 | Sim4 clustering to Release 3 |
Rbsn | 2008-04-29 | Release 5.5 accounting |
Rbsn | 2008-08-15 | Release 5.9 accounting |
Rbsn | 2008-12-18 | 5.12 accounting |
1840 bp (1840 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061374
> LD29542.complete AAGAGTGAAGTAGATAAATCTTGATGATTTCTGCAAATATTAGTTTTTAA ATAAAATTAATGGATTTGTAGAAACTCTGACCGTATTAATCGAGTTTAGG ACTACAAGTGCCGTAAGCCCCGTCATGCCACTGTTTTAAAACAAGTGGAA AACCTTAGGGTCAATTTTTTTTGGGGAGGAGACCACAACAAATAACACCC ACCGAATTAACTACGATTACTCATCGCCGGAATGTCTGGAAATCCTTTCG ACAGCGACGAAGATCAAAGCTCGGCCAGTGGAGAGATACTAGAGGGCTTC CTATGTCCCATTTGCCGTGCGGATCTCAAGTCCATCGATGTGCTCACGGA TCATTTTGCCCGCCAGCATGCGGAAGAGGAGGATGCCCTAAAATCCTTTA AAGATATCTTTACCAAGGCGAAAAAGAAGATCCTAAACCCCTTTGAGGAT GAAAAAGGTGCATCTGTATCGTCGCCCGCAGGTTCCTCCTCTTCAGCGGC TGGCAAGAATCCCAATGGCAACGGAGATCGCAATGGACCCAGTAATGCCC GCTCCCGTCTAAATGTATTTAACTATATGGCCAGGCAGCAGCCTGGTGCT GAGTGCTCCCACTTCGAGTACTTTCAGTCCATTCGCAATCCTCGCCTGGA GCGATATGCCAGCGAAACAAACAAACTAATCATTCGTTTGCACCGCCTGC TTAAGGATCTGCCAGCGGATTCAGTGCAGCGGCGTCAGCATGAACAGCAA ACAGTTGCCTGGCTGGATGGTAGTTCCGTCAAGTTGTGTCCCAGTTGTGC CAAGAGTTTCCACATCGCCCGAAGACAACACCACTGCCGTTTGTGCGGAG GCATAATGTGCAATGATTGCTCCAAGTTCCTGCCCCTGGAAGATGCCATG CAACTAGCCAGTCTTTCCACCACAAGAAGCGAGCCCCTTCAGCAGCTGCA TCAGCATGAGAACGCCATCCGGCTGTGCGAACACTGCCTTTGGCTGCTGG ACACCCGAAAGGATATGCACGAAAGTCGCACTTGTCGCCCACTCCTCGTC CAGGTCTACGAACAAATTCGTCAACTACAAAAAGAAGTTACCCCGGATCT GGACATGTATCTAAAGATCATCAATAGCTTGAACGAAGGGGACACAATCT TCACGTTGGCGGATGCAGGTGCTTTGCGCGGCAAGATTGGACAAGTGGCA GAGGCCATGGACATGAGGAGCAAGCGCATTCTAGCCATATTTTGTGAACC AGGCAGCCGGGAGGAGGCATTAAAGAAGGCCATTCGGTTGGGCTGCATCC AAGCCATCAAGGAGCGAATGTTATCGCTGCCCCCACTGCCAGAGGAATCG CACATACGCCAGATGCAGGAGCGTAGACGCATGGAAACGGAGCAGCGTAT CCTCACCGAACAGCGCATGGCCATGGAAGCCTACGAACGAAATAACATGG CAGCTAACCAATCCAACGTTGGAGTTCCTGGTCCGGAAAGCGGATCCTTT GCCCAAGGGTCTGATCTTCAATCTCTGAACAACTGGTCAGCACCGCAGGC GGCTAGCAAGTCCAGCCTGGACGATCCGCTGATCGAGCAGATAAACATCA TTAAGGGCTACATCAAACAGGCTCGCCAGGACATGAACTTTGAGGTGGTG GAGACGCTGGAGCTAAATCTTCGCGAGCTACAGCGCGAAGTGTACGAGCG ACAGCGCCAGTCCCAGGGAAGCACCGCCGCCTCACCCACAGAGGCCTAAG CAGTATCCTACATAGTTAAATGTATATTCATTCCCTCTATGACAAATTAC ATGGCTTACGTTACGTTAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8158881..8159778 | 1..898 | 4490 | 100 | Plus |
chr2L | 23010047 | chr2L | 8159837..8160447 | 899..1509 | 3055 | 100 | Plus |
chr2L | 23010047 | chr2L | 8160512..8160820 | 1509..1817 | 1545 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8159861..8160758 | 1..898 | 4490 | 100 | Plus |
2L | 23513712 | 2L | 8160817..8161427 | 899..1509 | 3055 | 100 | Plus |
2L | 23513712 | 2L | 8161492..8161801 | 1509..1818 | 1550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8158881..8159778 | 1..898 | 100 | -> | Plus |
chr2L | 8159837..8160447 | 899..1509 | 100 | -> | Plus |
chr2L | 8160513..8160820 | 1510..1817 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbsn-RA | 1..1518 | 232..1749 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbsn-5-RA | 1..1518 | 232..1749 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbsn-5-RA | 1..1518 | 232..1749 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbsn-RA | 1..1518 | 232..1749 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbsn-5-RA | 1..1518 | 232..1749 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbsn-RA | 22..1838 | 1..1817 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbsn-5-RA | 22..1838 | 1..1817 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbsn-5-RA | 30..1846 | 1..1817 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbsn-RA | 23..1836 | 1..1814 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbsn-5-RA | 30..1846 | 1..1817 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8159861..8160758 | 1..898 | 100 | -> | Plus |
2L | 8160817..8161427 | 899..1509 | 100 | -> | Plus |
2L | 8161493..8161800 | 1510..1817 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8159861..8160758 | 1..898 | 100 | -> | Plus |
2L | 8160817..8161427 | 899..1509 | 100 | -> | Plus |
2L | 8161493..8161800 | 1510..1817 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8159861..8160758 | 1..898 | 100 | -> | Plus |
2L | 8160817..8161427 | 899..1509 | 100 | -> | Plus |
2L | 8161493..8161800 | 1510..1817 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8159861..8160758 | 1..898 | 100 | -> | Plus |
arm_2L | 8160817..8161427 | 899..1509 | 100 | -> | Plus |
arm_2L | 8161493..8161800 | 1510..1817 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8161493..8161800 | 1510..1817 | 100 | Plus | |
2L | 8159861..8160758 | 1..898 | 100 | -> | Plus |
2L | 8160817..8161427 | 899..1509 | 100 | -> | Plus |
Translation from 231 to 1748
> LD29542.hyp MSGNPFDSDEDQSSASGEILEGFLCPICRADLKSIDVLTDHFARQHAEEE DALKSFKDIFTKAKKKILNPFEDEKGASVSSPAGSSSSAAGKNPNGNGDR NGPSNARSRLNVFNYMARQQPGAECSHFEYFQSIRNPRLERYASETNKLI IRLHRLLKDLPADSVQRRQHEQQTVAWLDGSSVKLCPSCAKSFHIARRQH HCRLCGGIMCNDCSKFLPLEDAMQLASLSTTRSEPLQQLHQHENAIRLCE HCLWLLDTRKDMHESRTCRPLLVQVYEQIRQLQKEVTPDLDMYLKIINSL NEGDTIFTLADAGALRGKIGQVAEAMDMRSKRILAIFCEPGSREEALKKA IRLGCIQAIKERMLSLPPLPEESHIRQMQERRRMETEQRILTEQRMAMEA YERNNMAANQSNVGVPGPESGSFAQGSDLQSLNNWSAPQAASKSSLDDPL IEQINIIKGYIKQARQDMNFEVVETLELNLRELQREVYERQRQSQGSTAA SPTEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rbsn-5-PA | 505 | CG8506-PA | 1..505 | 1..505 | 2610 | 100 | Plus |
Translation from 231 to 1748
> LD29542.pep MSGNPFDSDEDQSSASGEILEGFLCPICRADLKSIDVLTDHFARQHAEEE DALKSFKDIFTKAKKKILNPFEDEKGASVSSPAGSSSSAAGKNPNGNGDR NGPSNARSRLNVFNYMARQQPGAECSHFEYFQSIRNPRLERYASETNKLI IRLHRLLKDLPADSVQRRQHEQQTVAWLDGSSVKLCPSCAKSFHIARRQH HCRLCGGIMCNDCSKFLPLEDAMQLASLSTTRSEPLQQLHQHENAIRLCE HCLWLLDTRKDMHESRTCRPLLVQVYEQIRQLQKEVTPDLDMYLKIINSL NEGDTIFTLADAGALRGKIGQVAEAMDMRSKRILAIFCEPGSREEALKKA IRLGCIQAIKERMLSLPPLPEESHIRQMQERRRMETEQRILTEQRMAMEA YERNNMAANQSNVGVPGPESGSFAQGSDLQSLNNWSAPQAASKSSLDDPL IEQINIIKGYIKQARQDMNFEVVETLELNLRELQREVYERQRQSQGSTAA SPTEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15504-PA | 504 | GF15504-PA | 1..504 | 1..505 | 2282 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10518-PA | 505 | GG10518-PA | 1..505 | 1..505 | 2643 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10254-PA | 503 | GH10254-PA | 1..496 | 1..494 | 1961 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rbsn-5-PA | 505 | CG8506-PA | 1..505 | 1..505 | 2610 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15463-PA | 503 | GI15463-PA | 1..503 | 1..505 | 1972 | 74.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18802-PA | 510 | GL18802-PA | 1..500 | 1..502 | 2223 | 84.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21126-PA | 510 | GA21126-PA | 1..500 | 1..502 | 2246 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16797-PA | 476 | GM16797-PA | 1..476 | 1..505 | 2293 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23509-PA | 505 | GD23509-PA | 1..505 | 1..505 | 2667 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17284-PA | 502 | GJ17284-PA | 1..498 | 1..502 | 2057 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23930-PA | 508 | GK23930-PA | 3..503 | 2..495 | 1925 | 75.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18739-PA | 505 | GE18739-PA | 1..505 | 1..505 | 2633 | 96.8 | Plus |