Clone LD29542 Report

Search the DGRC for LD29542

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:295
Well:42
Vector:pOT2
Associated Gene/TranscriptRbsn-5-RA
Protein status:LD29542.pep: gold
Preliminary Size:2005
Sequenced Size:1840

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8506 2001-01-01 Release 2 assignment
CG8506 2001-10-10 Blastp of sequenced clone
CG8506 2003-01-01 Sim4 clustering to Release 3
Rbsn 2008-04-29 Release 5.5 accounting
Rbsn 2008-08-15 Release 5.9 accounting
Rbsn 2008-12-18 5.12 accounting

Clone Sequence Records

LD29542.complete Sequence

1840 bp (1840 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061374

> LD29542.complete
AAGAGTGAAGTAGATAAATCTTGATGATTTCTGCAAATATTAGTTTTTAA
ATAAAATTAATGGATTTGTAGAAACTCTGACCGTATTAATCGAGTTTAGG
ACTACAAGTGCCGTAAGCCCCGTCATGCCACTGTTTTAAAACAAGTGGAA
AACCTTAGGGTCAATTTTTTTTGGGGAGGAGACCACAACAAATAACACCC
ACCGAATTAACTACGATTACTCATCGCCGGAATGTCTGGAAATCCTTTCG
ACAGCGACGAAGATCAAAGCTCGGCCAGTGGAGAGATACTAGAGGGCTTC
CTATGTCCCATTTGCCGTGCGGATCTCAAGTCCATCGATGTGCTCACGGA
TCATTTTGCCCGCCAGCATGCGGAAGAGGAGGATGCCCTAAAATCCTTTA
AAGATATCTTTACCAAGGCGAAAAAGAAGATCCTAAACCCCTTTGAGGAT
GAAAAAGGTGCATCTGTATCGTCGCCCGCAGGTTCCTCCTCTTCAGCGGC
TGGCAAGAATCCCAATGGCAACGGAGATCGCAATGGACCCAGTAATGCCC
GCTCCCGTCTAAATGTATTTAACTATATGGCCAGGCAGCAGCCTGGTGCT
GAGTGCTCCCACTTCGAGTACTTTCAGTCCATTCGCAATCCTCGCCTGGA
GCGATATGCCAGCGAAACAAACAAACTAATCATTCGTTTGCACCGCCTGC
TTAAGGATCTGCCAGCGGATTCAGTGCAGCGGCGTCAGCATGAACAGCAA
ACAGTTGCCTGGCTGGATGGTAGTTCCGTCAAGTTGTGTCCCAGTTGTGC
CAAGAGTTTCCACATCGCCCGAAGACAACACCACTGCCGTTTGTGCGGAG
GCATAATGTGCAATGATTGCTCCAAGTTCCTGCCCCTGGAAGATGCCATG
CAACTAGCCAGTCTTTCCACCACAAGAAGCGAGCCCCTTCAGCAGCTGCA
TCAGCATGAGAACGCCATCCGGCTGTGCGAACACTGCCTTTGGCTGCTGG
ACACCCGAAAGGATATGCACGAAAGTCGCACTTGTCGCCCACTCCTCGTC
CAGGTCTACGAACAAATTCGTCAACTACAAAAAGAAGTTACCCCGGATCT
GGACATGTATCTAAAGATCATCAATAGCTTGAACGAAGGGGACACAATCT
TCACGTTGGCGGATGCAGGTGCTTTGCGCGGCAAGATTGGACAAGTGGCA
GAGGCCATGGACATGAGGAGCAAGCGCATTCTAGCCATATTTTGTGAACC
AGGCAGCCGGGAGGAGGCATTAAAGAAGGCCATTCGGTTGGGCTGCATCC
AAGCCATCAAGGAGCGAATGTTATCGCTGCCCCCACTGCCAGAGGAATCG
CACATACGCCAGATGCAGGAGCGTAGACGCATGGAAACGGAGCAGCGTAT
CCTCACCGAACAGCGCATGGCCATGGAAGCCTACGAACGAAATAACATGG
CAGCTAACCAATCCAACGTTGGAGTTCCTGGTCCGGAAAGCGGATCCTTT
GCCCAAGGGTCTGATCTTCAATCTCTGAACAACTGGTCAGCACCGCAGGC
GGCTAGCAAGTCCAGCCTGGACGATCCGCTGATCGAGCAGATAAACATCA
TTAAGGGCTACATCAAACAGGCTCGCCAGGACATGAACTTTGAGGTGGTG
GAGACGCTGGAGCTAAATCTTCGCGAGCTACAGCGCGAAGTGTACGAGCG
ACAGCGCCAGTCCCAGGGAAGCACCGCCGCCTCACCCACAGAGGCCTAAG
CAGTATCCTACATAGTTAAATGTATATTCATTCCCTCTATGACAAATTAC
ATGGCTTACGTTACGTTAAAAAAAAAAAAAAAAAAAAAAA

LD29542.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-RA 1896 Rbsn-5-RA 24..1841 1..1818 9090 100 Plus
CG8498-RA 629 CG8498-RA 552..629 1818..1741 390 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8158881..8159778 1..898 4490 100 Plus
chr2L 23010047 chr2L 8159837..8160447 899..1509 3055 100 Plus
chr2L 23010047 chr2L 8160512..8160820 1509..1817 1545 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8159861..8160758 1..898 4490 100 Plus
2L 23513712 2L 8160817..8161427 899..1509 3055 100 Plus
2L 23513712 2L 8161492..8161801 1509..1818 1550 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8159861..8160758 1..898 4490 100 Plus
2L 23513712 2L 8160817..8161427 899..1509 3055 100 Plus
2L 23513712 2L 8161492..8161801 1509..1818 1550 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:14:39 has no hits.

LD29542.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:15:32 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8158881..8159778 1..898 100 -> Plus
chr2L 8159837..8160447 899..1509 100 -> Plus
chr2L 8160513..8160820 1510..1817 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:03 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-RA 1..1518 232..1749 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:13 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 1..1518 232..1749 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:08:47 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 1..1518 232..1749 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:10 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-RA 1..1518 232..1749 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:00:41 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 1..1518 232..1749 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:12 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-RA 22..1838 1..1817 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:13 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 22..1838 1..1817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:47 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 30..1846 1..1817 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:10 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-RA 23..1836 1..1814 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:00:41 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 30..1846 1..1817 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:32 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8159861..8160758 1..898 100 -> Plus
2L 8160817..8161427 899..1509 100 -> Plus
2L 8161493..8161800 1510..1817 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:32 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8159861..8160758 1..898 100 -> Plus
2L 8160817..8161427 899..1509 100 -> Plus
2L 8161493..8161800 1510..1817 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:32 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8159861..8160758 1..898 100 -> Plus
2L 8160817..8161427 899..1509 100 -> Plus
2L 8161493..8161800 1510..1817 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:47 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8159861..8160758 1..898 100 -> Plus
arm_2L 8160817..8161427 899..1509 100 -> Plus
arm_2L 8161493..8161800 1510..1817 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:17 Download gff for LD29542.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8161493..8161800 1510..1817 100   Plus
2L 8159861..8160758 1..898 100 -> Plus
2L 8160817..8161427 899..1509 100 -> Plus

LD29542.hyp Sequence

Translation from 231 to 1748

> LD29542.hyp
MSGNPFDSDEDQSSASGEILEGFLCPICRADLKSIDVLTDHFARQHAEEE
DALKSFKDIFTKAKKKILNPFEDEKGASVSSPAGSSSSAAGKNPNGNGDR
NGPSNARSRLNVFNYMARQQPGAECSHFEYFQSIRNPRLERYASETNKLI
IRLHRLLKDLPADSVQRRQHEQQTVAWLDGSSVKLCPSCAKSFHIARRQH
HCRLCGGIMCNDCSKFLPLEDAMQLASLSTTRSEPLQQLHQHENAIRLCE
HCLWLLDTRKDMHESRTCRPLLVQVYEQIRQLQKEVTPDLDMYLKIINSL
NEGDTIFTLADAGALRGKIGQVAEAMDMRSKRILAIFCEPGSREEALKKA
IRLGCIQAIKERMLSLPPLPEESHIRQMQERRRMETEQRILTEQRMAMEA
YERNNMAANQSNVGVPGPESGSFAQGSDLQSLNNWSAPQAASKSSLDDPL
IEQINIIKGYIKQARQDMNFEVVETLELNLRELQREVYERQRQSQGSTAA
SPTEA*

LD29542.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-PA 505 CG8506-PA 1..505 1..505 2610 100 Plus

LD29542.pep Sequence

Translation from 231 to 1748

> LD29542.pep
MSGNPFDSDEDQSSASGEILEGFLCPICRADLKSIDVLTDHFARQHAEEE
DALKSFKDIFTKAKKKILNPFEDEKGASVSSPAGSSSSAAGKNPNGNGDR
NGPSNARSRLNVFNYMARQQPGAECSHFEYFQSIRNPRLERYASETNKLI
IRLHRLLKDLPADSVQRRQHEQQTVAWLDGSSVKLCPSCAKSFHIARRQH
HCRLCGGIMCNDCSKFLPLEDAMQLASLSTTRSEPLQQLHQHENAIRLCE
HCLWLLDTRKDMHESRTCRPLLVQVYEQIRQLQKEVTPDLDMYLKIINSL
NEGDTIFTLADAGALRGKIGQVAEAMDMRSKRILAIFCEPGSREEALKKA
IRLGCIQAIKERMLSLPPLPEESHIRQMQERRRMETEQRILTEQRMAMEA
YERNNMAANQSNVGVPGPESGSFAQGSDLQSLNNWSAPQAASKSSLDDPL
IEQINIIKGYIKQARQDMNFEVVETLELNLRELQREVYERQRQSQGSTAA
SPTEA*

LD29542.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15504-PA 504 GF15504-PA 1..504 1..505 2282 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10518-PA 505 GG10518-PA 1..505 1..505 2643 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10254-PA 503 GH10254-PA 1..496 1..494 1961 76 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-PA 505 CG8506-PA 1..505 1..505 2610 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15463-PA 503 GI15463-PA 1..503 1..505 1972 74.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18802-PA 510 GL18802-PA 1..500 1..502 2223 84.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21126-PA 510 GA21126-PA 1..500 1..502 2246 84.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16797-PA 476 GM16797-PA 1..476 1..505 2293 88.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23509-PA 505 GD23509-PA 1..505 1..505 2667 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17284-PA 502 GJ17284-PA 1..498 1..502 2057 78.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23930-PA 508 GK23930-PA 3..503 2..495 1925 75.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18739-PA 505 GE18739-PA 1..505 1..505 2633 96.8 Plus