Clone LD29573 Report

Search the DGRC for LD29573

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:295
Well:73
Vector:pOT2
Associated Gene/TranscriptCG8368-RA
Protein status:LD29573.pep: gold
Sequenced Size:2504

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8368 2003-01-01 Sim4 clustering to Release 3
CG8368 2008-04-29 Release 5.5 accounting
CG8368 2008-08-15 Release 5.9 accounting
CG8368 2008-12-18 5.12 accounting

Clone Sequence Records

LD29573.complete Sequence

2504 bp (2504 high quality bases) assembled on 2005-08-02

GenBank Submission: BT023775

> LD29573.complete
TTAAATCTTCGTGTTGACAAATTGAAATCTACTGAAAATCGAGTTAATTT
AATAAAAGTTGCGTATTTTCGCCTGCAGCTTGAACGGTAAGCGCTCCAGG
ATGAAGGAACATATGTCCACCAAGCAGCACGAGCGCAACGAGAAGAAGAA
AAAGAAGCTGGCGGCCCTGGCGAACCTGATGGAGCTCAACGATCGCGATC
GATTGCACGAGGCAGAGTTGGCCAAAAAACGCGATGCAGAGGTCGAAGTG
GAGGAGAAGTCAACAGCGAAGGCGGAGGACGGGGACGACGGTTTCATCGT
GGTGGGCAGCAAACGCAAGCCGCGAAACCGTCGTCAAAACAACGAGCTGG
AGGCGGATTCACAGACTGCCCCAGGAACATCAGATCCTGAAGAGCCGGTG
AACAAGAAAATCCGCAATTACGATGCTGGTGGAGATAGCCTGCCGCTGGA
GATTGGCTCGCTATCCGAGGATCAGTACAATCAGTTGTCGGCAGAGTTGA
GGCGTCGCAAACGGGAGCTGGAGAACGTACCGGCCTTGCGACTGCGTGAG
ATGGGTCAGCGCGCCTCCCTGGAGACTCCGCAAGATGCTCGTACGCCCAT
CTTTCTAACCGACATCCAGAACCTGTTGATGTGCGCTCTCATTGGCCAGA
AGAGCCCCTGCCGTCCGGATCGCTGGTGCAGCGTGGAGAAGTGGCTCAGT
CTGTCGCACAGTGTGGTGGTCATTCTGGAGGGACTATCTCTCTACCACTA
TCTGTCTAACGAGACCCAGTTTGAGGCCACCAACAGGATATTCAGCACGA
AGCTGGAGATGATACTTCCACCGCAGGAGGAGGGCCAGAAGATTATCGAC
GAGATAGCCAAGATTCCTCTCACCAATGCGCAGGCACGCAGACTGATAGA
CGAGCACGGCTCCCTGGAGTCGGCTGTGGAGCTGAACAAAGATCCAACTT
TGTTTGTAAAGACAATCTTTCCAATCGAAAGCTCTAAATCTGAGTCGGAT
GACATGCATGAGGATGACAAGTTCCCACGCACTAAGCTCCTGCTGTCAGC
GCTGCAAATGGTCGACGAGGGCTATCCTATTCCATTGCAGGGCGAGCTAC
ACACTCGTTTCCAAAACTTTAAGTTTACCAAGGATCTGTATGCACCGGTA
ACCAATCGCAGTCCTATGTTCGGCGTTGATTGTGAAATGTGTCACACGGA
GGCGGGTTGTAACGAGCTAACCCGAATCTCTATTGTCAACGAAAATTACG
AGACCGTTTATGAAACGCTAGTGTTGCCAAATAACCGGATCACCGACTAT
CTAACCCAATATTCGGGCATAACCGCAGAAATTATGGAGCAAGTGACCAA
GAGGCTGGATGTTGTGCAAAAGGAAGTGTCCGAACTGCTGCCTCCAGATG
CCATTCTGGTGGGGCAATCTCTAAATTCTGACTTGAACGCCATGAAAATG
ATGCACCCGTATGTAATTGACACCAGCGTGTGCTTTAACACATCTGGGGT
GCGACGACGCAAGACCAAGCTGAAGGATCTGGCCAAAACCTTTTTACAGG
AAATTATCCAGGAGAACATCGATGGTCACGATTCCATTGAGGATTCGCGA
GCCACGCTGAAGCTCGTCAAGAAGAAGCTGGCAAACAGCATCGAGTTCGG
AGACCAGATCCTCACGCAGCACAAGCAATTACAGGAGTTGGCGAACGCAT
CCAGCGGTGATACCATATCCAACAATCTGTTTGCACATGTGGCAAAGCGG
GATAAGCGCACGGCCATTGTCACGGTCGGCGAGCTGCAGCCCCGTCTAAA
GGAAGTGATCGAAAAGGCGGGAGAGGCAGCGCCCAAGGATCAAAGTACGT
CGGTGCATGTCCACGAGGTATCTACGGCCAAGGAAGCCATTCGGAAGGTC
AATGAAGTTGCACTGGAAAATGCCCTGACAATTGCCAACCTCCGCGTGCC
AGAGCAGGACTTTATATTGGACAGTGCACAGCGGAGTGTTGCCAAACTGG
ACAAGACCATTGATCGCCTGTGGAAGTCAGTTGCGCACAACGGACTCTTC
CTCGTCATCATGGGCGGATCCACAGAGTGCTCGAAGGGTGTAGCCAAAAT
AGCCATCAAGCGACTAAACGGATCGAATCAGACTATGGAAAGTTAGGGAG
CTTTTAAGAACCTTACTTATGCTAACCGCCTCCATGGATACCCGCTCCCA
CTAAGGTCCTGAGTGTTGAAATCCAGCAGATAAATCAAATTTACCGTATC
ACACTGAAGACATGACCAACAGTTGCATTACCATACACCTGGGAAATGTC
CTGCATGCATGAGTGCATCGATGAAAAATTGTAAAATTAAAAACAAATTC
GATCAATAACGAATAATAAAATGTACATTTAATTTTTTTCACAAAATTCC
ATTGGCTTCTGCATAGTTGTATTAAATTAAATGAGCGGTAAAAATTATTA
TGGATTATTGTATAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

LD29573.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8368-RA 2568 CG8368-RA 81..2553 1..2473 12365 100 Plus
CG8368.b 2499 CG8368.b 66..2484 55..2473 12095 100 Plus
CG8368.e 2634 CG8368.e 223..2619 77..2473 11985 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6599542..6601148 861..2467 8020 99.9 Plus
chr3L 24539361 chr3L 6598626..6599487 1..862 4295 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6607133..6608745 861..2473 8065 100 Plus
3L 28110227 3L 6606217..6607078 1..862 4310 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6600233..6601845 861..2473 8065 100 Plus
3L 28103327 3L 6599317..6600178 1..862 4310 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:38:48 has no hits.

LD29573.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:39:28 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6598626..6599487 1..862 99 -> Plus
chr3L 6599544..6601148 863..2467 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:08 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
CG8368-RA 1..2046 101..2146 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:56:17 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
CG8368-RA 1..2046 101..2146 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:35:03 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
CG8368-RB 1..2046 101..2146 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:36:58 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
CG8368-RA 1..2046 101..2146 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:20 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
CG8368-RB 1..2046 101..2146 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:34:03 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
CG8368-RA 19..2485 1..2467 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:56:17 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
CG8368-RA 19..2485 1..2467 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:35:03 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
CG8368-RA 39..2505 1..2467 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:58 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
CG8368-RA 19..2485 1..2467 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:20 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
CG8368-RA 39..2505 1..2467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:28 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6606217..6607078 1..862 100 -> Plus
3L 6607135..6608739 863..2467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:28 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6606217..6607078 1..862 100 -> Plus
3L 6607135..6608739 863..2467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:28 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6606217..6607078 1..862 100 -> Plus
3L 6607135..6608739 863..2467 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:35:03 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6599317..6600178 1..862 100 -> Plus
arm_3L 6600235..6601839 863..2467 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:36 Download gff for LD29573.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6599317..6600178 1..862 100 -> Plus
3L 6600235..6601839 863..2467 100   Plus

LD29573.pep Sequence

Translation from 100 to 2145

> LD29573.pep
MKEHMSTKQHERNEKKKKKLAALANLMELNDRDRLHEAELAKKRDAEVEV
EEKSTAKAEDGDDGFIVVGSKRKPRNRRQNNELEADSQTAPGTSDPEEPV
NKKIRNYDAGGDSLPLEIGSLSEDQYNQLSAELRRRKRELENVPALRLRE
MGQRASLETPQDARTPIFLTDIQNLLMCALIGQKSPCRPDRWCSVEKWLS
LSHSVVVILEGLSLYHYLSNETQFEATNRIFSTKLEMILPPQEEGQKIID
EIAKIPLTNAQARRLIDEHGSLESAVELNKDPTLFVKTIFPIESSKSESD
DMHEDDKFPRTKLLLSALQMVDEGYPIPLQGELHTRFQNFKFTKDLYAPV
TNRSPMFGVDCEMCHTEAGCNELTRISIVNENYETVYETLVLPNNRITDY
LTQYSGITAEIMEQVTKRLDVVQKEVSELLPPDAILVGQSLNSDLNAMKM
MHPYVIDTSVCFNTSGVRRRKTKLKDLAKTFLQEIIQENIDGHDSIEDSR
ATLKLVKKKLANSIEFGDQILTQHKQLQELANASSGDTISNNLFAHVAKR
DKRTAIVTVGELQPRLKEVIEKAGEAAPKDQSTSVHVHEVSTAKEAIRKV
NEVALENALTIANLRVPEQDFILDSAQRSVAKLDKTIDRLWKSVAHNGLF
LVIMGGSTECSKGVAKIAIKRLNGSNQTMES*

LD29573.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23543-PA 703 GF23543-PA 1..696 1..677 2713 77.2 Plus
Dana\GF16301-PA 1006 GF16301-PA 842..1005 350..514 334 43.6 Plus
Dana\GF21199-PA 834 GF21199-PA 664..817 356..506 257 39.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15351-PA 677 GG15351-PA 1..675 1..675 3260 92 Plus
Dere\GG11572-PA 985 GG11572-PA 821..984 350..514 332 43 Plus
Dere\GG12883-PA 773 GG12883-PA 606..757 356..506 273 40.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15165-PA 698 GH15165-PA 3..683 1..675 2403 68.7 Plus
Dgri\GH16553-PA 962 GH16553-PA 798..961 350..514 332 43 Plus
Dgri\GH17667-PA 273 GH17667-PA 85..266 337..515 282 37.5 Plus
Dgri\GH15107-PA 263 GH15107-PA 87..248 353..512 165 32.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Rexo5-PA 681 CG8368-PA 1..681 1..681 3453 100 Plus
Rexo5-PB 681 CG8368-PB 1..681 1..681 3453 100 Plus
CG12877-PC 991 CG12877-PC 827..990 350..514 319 41.8 Plus
prage-PK 742 CG42666-PK 575..726 356..506 250 38.6 Plus
prage-PI 742 CG42666-PI 575..726 356..506 250 38.6 Plus
prage-PH 742 CG42666-PH 575..726 356..506 250 38.6 Plus
prage-PG 742 CG42666-PG 575..726 356..506 250 38.6 Plus
prage-PD 742 CG42666-PD 575..726 356..506 250 38.6 Plus
prage-PF 761 CG42666-PF 594..745 356..506 250 38.6 Plus
prage-PA 761 CG42666-PA 594..745 356..506 250 38.6 Plus
prage-PC 761 CG42666-PC 594..745 356..506 250 38.6 Plus
prage-PB 787 CG42666-PB 620..771 356..506 250 38.6 Plus
prage-PJ 852 CG42666-PJ 685..836 356..506 250 38.6 Plus
prage-PE 852 CG42666-PE 685..836 356..506 250 38.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12104-PA 686 GI12104-PA 1..671 1..674 2371 69.2 Plus
Dmoj\GI22024-PA 988 GI22024-PA 821..987 345..514 329 41.8 Plus
Dmoj\GI11131-PA 902 GI11131-PA 728..902 352..518 286 39.5 Plus
Dmoj\GI13758-PA 275 GI13758-PA 105..266 353..512 155 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13270-PA 690 GL13270-PA 1..684 1..678 2535 72.3 Plus
Dper\GL26761-PA 822 GL26761-PA 601..806 315..506 257 34.1 Plus
Dper\GL13711-PA 117 GL13711-PA 2..116 400..514 207 41.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21025-PA 709 GA21025-PA 1..703 1..678 2523 70.6 Plus
Dpse\GA11877-PA 949 GA11877-PA 785..948 350..514 335 44.2 Plus
Dpse\GA13257-PA 817 GA13257-PA 596..801 315..506 257 34.1 Plus
Dpse\GA19891-PA 278 GA19891-PA 99..263 350..512 153 31.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14791-PA 681 GM14791-PA 1..681 1..681 3438 96 Plus
Dsec\GM16354-PA 934 GM16354-PA 770..933 350..514 323 41.8 Plus
Dsec\GM19170-PA 745 GM19170-PA 578..729 356..506 262 39.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13963-PA 681 GD13963-PA 1..681 1..681 3430 95.9 Plus
Dsim\GD21350-PA 931 GD21350-PA 772..930 350..514 261 37.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13378-PA 689 GJ13378-PA 1..674 1..675 2398 69.8 Plus
Dvir\GJ10473-PA 971 GJ10473-PA 804..970 345..514 325 41.8 Plus
Dvir\GJ19056-PA 879 GJ19056-PA 688..879 337..518 272 37.6 Plus
Dvir\GJ13749-PA 275 GJ13749-PA 102..263 353..512 152 34.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12547-PA 693 GK12547-PA 1..692 1..677 2530 72.6 Plus
Dwil\GK11769-PA 995 GK11769-PA 831..994 350..514 331 43.6 Plus
Dwil\GK20067-PA 798 GK20067-PA 631..781 356..506 256 38.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21570-PA 677 GE21570-PA 1..675 1..675 3238 91.4 Plus
Dyak\GE23757-PA 993 GE23757-PA 829..992 350..514 337 43.6 Plus
Dyak\GE16711-PA 764 GE16711-PA 597..748 356..506 270 40.3 Plus

LD29573.hyp Sequence

Translation from 100 to 2145

> LD29573.hyp
MKEHMSTKQHERNEKKKKKLAALANLMELNDRDRLHEAELAKKRDAEVEV
EEKSTAKAEDGDDGFIVVGSKRKPRNRRQNNELEADSQTAPGTSDPEEPV
NKKIRNYDAGGDSLPLEIGSLSEDQYNQLSAELRRRKRELENVPALRLRE
MGQRASLETPQDARTPIFLTDIQNLLMCALIGQKSPCRPDRWCSVEKWLS
LSHSVVVILEGLSLYHYLSNETQFEATNRIFSTKLEMILPPQEEGQKIID
EIAKIPLTNAQARRLIDEHGSLESAVELNKDPTLFVKTIFPIESSKSESD
DMHEDDKFPRTKLLLSALQMVDEGYPIPLQGELHTRFQNFKFTKDLYAPV
TNRSPMFGVDCEMCHTEAGCNELTRISIVNENYETVYETLVLPNNRITDY
LTQYSGITAEIMEQVTKRLDVVQKEVSELLPPDAILVGQSLNSDLNAMKM
MHPYVIDTSVCFNTSGVRRRKTKLKDLAKTFLQEIIQENIDGHDSIEDSR
ATLKLVKKKLANSIEFGDQILTQHKQLQELANASSGDTISNNLFAHVAKR
DKRTAIVTVGELQPRLKEVIEKAGEAAPKDQSTSVHVHEVSTAKEAIRKV
NEVALENALTIANLRVPEQDFILDSAQRSVAKLDKTIDRLWKSVAHNGLF
LVIMGGSTECSKGVAKIAIKRLNGSNQTMES*

LD29573.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8368-PA 681 CG8368-PA 1..681 1..681 3453 100 Plus
CG8368-PB 681 CG8368-PB 1..681 1..681 3453 100 Plus
CG12877-PC 991 CG12877-PC 827..990 350..514 319 41.8 Plus
CG42666-PK 742 CG42666-PK 575..726 356..506 250 38.6 Plus
CG42666-PI 742 CG42666-PI 575..726 356..506 250 38.6 Plus