Clone LD29590 Report

Search the DGRC for LD29590

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:295
Well:90
Vector:pOT2
Associated Gene/TranscriptP32-RA
Protein status:LD29590.pep: gold
Preliminary Size:1355
Sequenced Size:1141

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6459 2001-01-01 Release 2 assignment
CG6459 2002-03-19 Blastp of sequenced clone
CG6459 2003-01-01 Sim4 clustering to Release 3
CG6459 2008-04-29 Release 5.5 accounting
CG6459 2008-08-15 Release 5.9 accounting
CG6459 2008-12-18 5.12 accounting

Clone Sequence Records

LD29590.complete Sequence

1141 bp (1141 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094810

> LD29590.complete
TTGCACATTTCAGTGTTTAATTAAAGTAAAAAGCCCAGGTCGCGGTTATA
TAACAAAATGAACAGCCTAAGGACAGCAACCATGCGATTTGCCGCTCTGG
CCAGCTCCAGTGCCGGATCTCTCGGCAAGCGCGATTTCACCCGCAGCCTG
TGGCACATGACCAAAAAGCCGGTGACAGCCGGAGGATCCGATCATGTAAC
CGTGTTGAATCTCCACAAGCCCAGCATTAATTGCACGTGCGGCTGCAACG
TGCACACCAAATGTGAGCGGGAACTGGTGGAGTTCCTCACCGAGGAGATA
GTGGCCGAGCGCAAGGTTCAAAAGGGCAAGACGGTGCCAAGCACCCTGGA
TGGATTCGCCGTAAAACTGACCGGCGCCGATGTGGAGCTCACCAAGCAGA
CGGATAAGGAAAAGGTGGTGGTCAGCTTCAATGTGAACCATACGGTGGAC
AGCGAGGAGGAGCCCGAAATCAACCCCAATGCTGACAAGCCGGATCTCGG
TGAAATGAGAAGCAAGCCCCAGTTCGAGGTGGACATCATAAAGGGCAACT
CTACGCTGTCCTTTACCTGCAGCTTCCTTCAAGGCGAAGCTCAGGAGGGC
GAGTACAACGATGTCTTCTCCATTGATGAAATGGCCATCTTCGAGGGCGA
GTGGAACGATAAGGTCTACGCCGTCGCAGGCGACGTGCTTGACGGTTACT
TGTACGACTTGCTGATCAACTTGCTGGAGGAGAAGGGCATCAGTCAGGAG
TTTGCCGAAAAACTGTCGGACCTAGCCACTGCCCATGAGCACACTTCCTA
CATTGGTCTGCTGGAAAAGCTCTCCAAATTCACTGCCGGTGGCAAGTGAA
TGTTCGTCCCACTTAATCTTAAAGCATAAAGTTGTGTAGGTTTTTAAGTT
TCTATTGTCTGCTGTCGCAGTTTCATCACCTAAAACAGTTTTTATTAGTT
GTGTTTTTGGTTTAACTGTGACAGTGAAACTTAGTTTTTAAGCCATAAAA
CATTCATACATGTTTCAGATAAAACTATAGAAACGGTTGCCAATAATTCA
CCCTTTTCGGCATCAGCTTCGCTTTGGTTTTTAACAAATACAACGTTAAT
TCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD29590.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6459-RA 1609 CG6459-RA 140..1245 1..1106 5530 100 Plus
CG6459.a 1173 CG6459.a 53..659 1..607 3035 100 Plus
CG6459.a 1173 CG6459.a 674..1172 608..1106 2495 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13558389..13558886 1105..608 2460 99.6 Minus
chr2R 21145070 chr2R 13558945..13559289 607..263 1665 98.8 Minus
chr2R 21145070 chr2R 13559408..13559671 264..1 1290 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17671308..17671806 1106..608 2495 100 Minus
2R 25286936 2R 17671865..17672209 607..263 1725 100 Minus
2R 25286936 2R 17672328..17672591 264..1 1320 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17672507..17673005 1106..608 2495 100 Minus
2R 25260384 2R 17673064..17673408 607..263 1725 100 Minus
2R 25260384 2R 17673527..17673790 264..1 1320 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:00:41 has no hits.

LD29590.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:01:38 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13558389..13558886 608..1105 99 <- Minus
chr2R 13558945..13559289 263..607 98 <- Minus
chr2R 13559410..13559671 1..262 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:28:30 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6459-RA 1..792 58..849 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:48:35 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
P32-RA 1..792 58..849 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:02:56 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6459-RA 1..792 58..849 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:23:11 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
P32-RA 1..792 58..849 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:54:57 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6459-RA 45..1147 1..1103 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:28:30 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6459-RA 53..1157 1..1105 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:35 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
P32-RA 50..1154 1..1105 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:02:56 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6459-RA 45..1147 1..1103 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:23:11 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
P32-RA 50..1154 1..1105 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:38 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17671309..17671806 608..1105 100 <- Minus
2R 17671865..17672209 263..607 100 <- Minus
2R 17672330..17672591 1..262 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:38 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17671309..17671806 608..1105 100 <- Minus
2R 17671865..17672209 263..607 100 <- Minus
2R 17672330..17672591 1..262 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:38 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17671309..17671806 608..1105 100 <- Minus
2R 17671865..17672209 263..607 100 <- Minus
2R 17672330..17672591 1..262 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:35 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13558814..13559311 608..1105 100 <- Minus
arm_2R 13559370..13559714 263..607 100 <- Minus
arm_2R 13559835..13560096 1..262 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:21 Download gff for LD29590.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17672508..17673005 608..1105 100 <- Minus
2R 17673064..17673408 263..607 100 <- Minus
2R 17673529..17673790 1..262 100   Minus

LD29590.pep Sequence

Translation from 57 to 848

> LD29590.pep
MNSLRTATMRFAALASSSAGSLGKRDFTRSLWHMTKKPVTAGGSDHVTVL
NLHKPSINCTCGCNVHTKCERELVEFLTEEIVAERKVQKGKTVPSTLDGF
AVKLTGADVELTKQTDKEKVVVSFNVNHTVDSEEEPEINPNADKPDLGEM
RSKPQFEVDIIKGNSTLSFTCSFLQGEAQEGEYNDVFSIDEMAIFEGEWN
DKVYAVAGDVLDGYLYDLLINLLEEKGISQEFAEKLSDLATAHEHTSYIG
LLEKLSKFTAGGK*

LD29590.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13236-PA 262 GF13236-PA 1..262 1..263 1297 90.9 Plus
Dana\GF19086-PA 310 GF19086-PA 55..297 24..261 384 35.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21031-PA 263 GG21031-PA 1..263 1..263 1317 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21807-PA 261 GH21807-PA 1..259 1..260 1224 85.8 Plus
Dgri\GH12794-PA 271 GH12794-PA 59..259 67..261 356 38.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
P32-PA 263 CG6459-PA 1..263 1..263 1358 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20778-PA 260 GI20778-PA 1..259 1..261 1266 89.3 Plus
Dmoj\GI15239-PA 267 GI15239-PA 61..257 67..261 360 38.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17681-PA 263 GL17681-PA 1..263 1..263 1152 85.6 Plus
Dper\GL24768-PA 268 GL24768-PA 62..252 67..260 247 33.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19611-PA 263 GA19611-PA 1..263 1..263 1152 85.6 Plus
Dpse\GA28905-PA 266 GA28905-PA 21..250 16..260 260 31 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19961-PA 263 GM19961-PA 1..263 1..263 1395 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25453-PA 328 GD25453-PA 119..328 54..263 1093 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20513-PA 263 GJ20513-PA 1..262 1..261 1255 88.2 Plus
Dvir\GJ18841-PA 254 GJ18841-PA 48..244 67..261 360 38.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15662-PA 262 GK15662-PA 1..262 1..263 1233 84.8 Plus
Dwil\GK19758-PA 244 GK19758-PA 61..229 97..258 154 27.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13974-PA 263 GE13974-PA 1..263 1..263 1393 99.2 Plus

LD29590.hyp Sequence

Translation from 57 to 848

> LD29590.hyp
MNSLRTATMRFAALASSSAGSLGKRDFTRSLWHMTKKPVTAGGSDHVTVL
NLHKPSINCTCGCNVHTKCERELVEFLTEEIVAERKVQKGKTVPSTLDGF
AVKLTGADVELTKQTDKEKVVVSFNVNHTVDSEEEPEINPNADKPDLGEM
RSKPQFEVDIIKGNSTLSFTCSFLQGEAQEGEYNDVFSIDEMAIFEGEWN
DKVYAVAGDVLDGYLYDLLINLLEEKGISQEFAEKLSDLATAHEHTSYIG
LLEKLSKFTAGGK*

LD29590.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
P32-PA 263 CG6459-PA 1..263 1..263 1358 100 Plus