Clone LD29716 Report

Search the DGRC for LD29716

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:297
Well:16
Vector:pOT2
Associated Gene/TranscriptCG32756-RA
Protein status:LD29716.pep: gold
Preliminary Size:2102
Sequenced Size:1920

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12728 2001-01-01 Release 2 assignment
CG32756 2001-10-10 Blastp of sequenced clone
CG32756 2003-01-01 Sim4 clustering to Release 3
CG32756 2008-04-29 Release 5.5 accounting
CG32756 2008-08-15 Release 5.9 accounting
CG32756 2008-12-18 5.12 accounting

Clone Sequence Records

LD29716.complete Sequence

1920 bp (1920 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061375

> LD29716.complete
CAGTGATGTTTCTTTCCTTTGATTTCTGATCCTTCTAAACGTAACTTCAA
AATGCTATTGAAAGTAGTGAATATAAATGGCTTGCAGCACCTGTTCGCCT
GCACTGAGGGGCAGCATGATGAAACCCTAACTATTCACGTTTTCCGTCCT
CGCGAGAAGTGGACTTACTCCGAGACTTTGATGAAACGCGATTACCAGCA
GCGTTTGAAAACGCTCAACGCGCGTGTGAAGTTTCCCGAGGAATTGGTGC
GCCAGGTCCTGCTCAACAAGGATCCATTGCATGTCGAACAGGATTACCAG
CACCCATTGAACGTCCTGAAACTGAAGTATGCCATGGCGAATTTCAAAGT
TTTCCTCAAGTGGGAATGGCACCTGAGACCCATGGATGCCGCACAGTTGT
ATAGCCAAATGTTCTTGAACACAATGTCCACGGCTTTGGGACTACGGGCT
CAGATACCCCTTCTGCTAGGGATTATCCATGCCAAGGACAAGGAGCTGAA
CCAGTATCGCACCGAGGGATGCCAGCTGCGCAGAGTGACCGTGGAAACCC
AGCCCTTTGATCTCGAGGCTTTTATGAATGAGCACAAGCAATTGCTGGAC
TGTTCCGCTGCCTACCAGAAGGCGCAGAGTACTTTTTTTGCTGATAAGCC
ATCGCCTAATTGGACATCGCTTTCTTCGCCATGGGCACGGGATGTCGCGC
CCTATTCTTCGTCAAACGGCTACTTTGCTTCTTCGAAGGCATCAAGCCCA
AAAGAAGCTCCTCGCATTAGGAAGCGCAAGGCTCTTGAAATCAATACCAA
TCATATGGAGCGCAAGGTAATGCAGCGCCGCTCCAATCCGCTTGTCGAGT
ACAAAAGCTCGCAGAGTTCCCAAGAGACAAACGTAAATGTAATCTTAAAA
GTAGAGCTAGCGCCAATGGACACCAAGAATGATCTCACTGATGATGACGA
AGAGTCATCCACATCTTCGGGGCTTTCCCAAGGATGGTCTGGCCGACAAC
TAACCAAATTTAATCCAACCGTCGGAAATGGTGTATATGAACTTGCATCT
CAGGAACAGTATGCTTCTTCTGAAGATGAGGATGCTTCTTCTAAAGATGC
GTATACTTCTTCTAAATATGAGGATGCTTCTTCTAAAGATGAGGATGCTT
CTTCTAAAGATGATGATGCCTCTAAATATGAGGATGCTTCTTTTAATGAT
GAGAATTCTTCTTCTGATGATGAGGAGGTCACTAGGGAGGCATCGAACGC
TTTGGATTCTATTAATGATTTTTACGATTACCCCCCGGCATTCACTCAAG
AACCCGAAGTCGGAATATCCGAGGGGAATTTGGATGTAATTCATCAAATT
GAGCTGGAAGAGATCAAAGCCGCACTGATTTACTCAACTGGTCGCGTCGC
AGAAGCGATCAATAATCTAGAGAAAAAATAATTTGGAAACGATCTCAGTC
TAAATGGTGCTACAAGCAAAACCTTAGCCTTAGTACATACGTTTTTTTTT
TTTTTTTTTTTGAGATAAAAACAAATCCTCAGTGATACAAGGATAAAAGA
CATGATTCCATTTGTTGATTAGGTATTCGTACCTAAGTCCATCGAACAGC
AATCAAATGAAACAAAACAATGTATAGTGTTGTAGATTTTAAAACGACAT
CTTACCAAAACACCCTCAGTACACAAACAAGTTGAATTCTACTGCATACA
AGCAGCAACTAACTCCTATCTCTATGGAACATATCGACTGATATTAAAAT
GCGTCCGATTAGTCACGGCTTTCCAACGGTTATAGCCTCCTGATCAATGC
ATTTTATGCTAAATGTTTTTTGTTAAATATTTTTTTGGCGTAATTACTAA
TAAAATTGAATAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

LD29716.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32756-RA 2131 CG32756-RA 1..1871 1..1870 9315 99.9 Plus
CG12728-RA 1874 CG12728-RA 52..1277 1..1226 5605 97.4 Plus
CG12728-RA 1874 CG12728-RA 1610..1788 1495..1674 680 92.7 Plus
CG12728-RA 1874 CG12728-RA 1130..1325 1061..1253 565 86.7 Plus
CG12728-RA 1874 CG12728-RA 1513..1616 1408..1511 370 90.3 Plus
CG12728-RA 1874 CG12728-RA 1390..1503 1297..1410 285 83.3 Plus
CG12728-RA 1874 CG12728-RA 1807..1874 1517..1585 275 95.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5839060..5840158 769..1866 5445 99.9 Plus
chrX 22417052 chrX 5835984..5836963 769..1685 2425 84.8 Plus
chrX 22417052 chrX 5838764..5839001 534..771 1190 100 Plus
chrX 22417052 chrX 5835688..5835925 534..771 1145 98.7 Plus
chrX 22417052 chrX 5834945..5835154 1..210 1050 100 Plus
chrX 22417052 chrX 5838017..5838226 1..210 1050 100 Plus
chrX 22417052 chrX 5835216..5835401 211..396 930 100 Plus
chrX 22417052 chrX 5838288..5838473 211..396 930 100 Plus
chrX 22417052 chrX 5836965..5837194 1517..1750 920 94.9 Plus
chrX 22417052 chrX 5838538..5838678 395..535 705 100 Plus
chrX 22417052 chrX 5835466..5835603 395..532 675 99.3 Plus
chrX 22417052 chrX 5836271..5836399 1101..1226 325 85.3 Plus
chrX 22417052 chrX 5836357..5836459 1061..1163 320 87.4 Plus
chrX 22417052 chrX 5836381..5836459 1064..1142 275 89.9 Plus
chrX 22417052 chrX 5839392..5839493 1059..1163 265 85.7 Plus
chrX 22417052 chrX 5837237..5837304 1755..1822 265 92.6 Plus
chrX 22417052 chrX 5839350..5839454 1101..1202 265 85.7 Plus
chrX 22417052 chrX 5836399..5836459 1061..1121 185 86.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:22:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5946753..5947855 769..1870 5465 99.9 Plus
X 23542271 X 5943671..5944639 769..1674 2370 84.6 Plus
X 23542271 X 5946457..5946694 534..771 1190 100 Plus
X 23542271 X 5943375..5943612 534..771 1145 98.7 Plus
X 23542271 X 5942632..5942841 1..210 1050 100 Plus
X 23542271 X 5945710..5945919 1..210 1050 100 Plus
X 23542271 X 5942903..5943088 211..396 930 100 Plus
X 23542271 X 5945981..5946166 211..396 930 100 Plus
X 23542271 X 5944658..5944887 1517..1750 920 94.9 Plus
X 23542271 X 5946231..5946371 395..535 705 100 Plus
X 23542271 X 5943153..5943290 395..532 675 99.3 Plus
X 23542271 X 5943958..5944086 1101..1226 325 85.3 Plus
X 23542271 X 5944044..5944146 1061..1163 320 87.4 Plus
X 23542271 X 5944068..5944146 1064..1142 275 89.9 Plus
X 23542271 X 5944930..5944997 1755..1822 265 92.6 Plus
X 23542271 X 5947043..5947147 1101..1202 265 85.7 Plus
X 23542271 X 5947085..5947186 1059..1163 265 85.7 Plus
X 23542271 X 5944086..5944146 1061..1121 185 86.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5954851..5955953 769..1870 5475 99.9 Plus
X 23527363 X 5951769..5952226 769..1226 1840 94.3 Plus
X 23527363 X 5954555..5954792 534..771 1190 100 Plus
X 23527363 X 5951473..5951710 534..771 1145 98.7 Plus
X 23527363 X 5953808..5954017 1..210 1050 100 Plus
X 23527363 X 5950730..5950939 1..210 1050 100 Plus
X 23527363 X 5952756..5952985 1517..1750 940 94.8 Plus
X 23527363 X 5954079..5954264 211..396 930 100 Plus
X 23527363 X 5951001..5951186 211..396 930 100 Plus
X 23527363 X 5954329..5954469 395..535 705 100 Plus
X 23527363 X 5952559..5952737 1495..1674 680 92.7 Plus
X 23527363 X 5951251..5951388 395..532 675 99.2 Plus
X 23527363 X 5952079..5952274 1061..1253 565 86.7 Plus
X 23527363 X 5952462..5952565 1408..1511 370 90.3 Plus
X 23527363 X 5952339..5952452 1297..1410 285 83.3 Plus
X 23527363 X 5953028..5953095 1755..1822 265 92.6 Plus
Blast to na_te.dros performed on 2019-03-16 04:10:48 has no hits.

LD29716.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:12:00 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5838017..5838226 1..210 100 -> Plus
chrX 5838288..5838473 211..396 100 -> Plus
chrX 5838540..5838678 397..535 100 -> Plus
chrX 5838766..5839000 536..770 100 -> Plus
chrX 5839062..5840158 771..1866 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:13 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 1..1380 52..1431 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:22 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 1..1380 52..1431 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:38 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 1..1380 52..1431 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:23 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 1..1380 52..1431 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:29:55 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 1..1380 52..1431 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:47 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 1..1867 1..1866 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:21 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 29..1895 1..1866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:38 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 29..1895 1..1866 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:23 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 1..1867 1..1866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:29:55 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 29..1895 1..1866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:00 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
X 5946459..5946693 536..770 100 -> Plus
X 5945710..5945919 1..210 100 -> Plus
X 5945981..5946166 211..396 100 -> Plus
X 5946233..5946371 397..535 100 -> Plus
X 5946755..5947851 771..1866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:00 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
X 5946459..5946693 536..770 100 -> Plus
X 5945710..5945919 1..210 100 -> Plus
X 5945981..5946166 211..396 100 -> Plus
X 5946233..5946371 397..535 100 -> Plus
X 5946755..5947851 771..1866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:00 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
X 5946459..5946693 536..770 100 -> Plus
X 5945710..5945919 1..210 100 -> Plus
X 5945981..5946166 211..396 100 -> Plus
X 5946233..5946371 397..535 100 -> Plus
X 5946755..5947851 771..1866 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:38 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5839743..5839952 1..210 100 -> Plus
arm_X 5840014..5840199 211..396 100 -> Plus
arm_X 5840266..5840404 397..535 100 -> Plus
arm_X 5840492..5840726 536..770 100 -> Plus
arm_X 5840788..5841884 771..1866 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:31 Download gff for LD29716.complete
Subject Subject Range Query Range Percent Splice Strand
X 5953808..5954017 1..210 100 -> Plus
X 5954079..5954264 211..396 100 -> Plus
X 5954331..5954469 397..535 100 -> Plus
X 5954557..5954791 536..770 100 -> Plus
X 5954853..5955949 771..1866 99   Plus

LD29716.pep Sequence

Translation from 51 to 1430

> LD29716.pep
MLLKVVNINGLQHLFACTEGQHDETLTIHVFRPREKWTYSETLMKRDYQQ
RLKTLNARVKFPEELVRQVLLNKDPLHVEQDYQHPLNVLKLKYAMANFKV
FLKWEWHLRPMDAAQLYSQMFLNTMSTALGLRAQIPLLLGIIHAKDKELN
QYRTEGCQLRRVTVETQPFDLEAFMNEHKQLLDCSAAYQKAQSTFFADKP
SPNWTSLSSPWARDVAPYSSSNGYFASSKASSPKEAPRIRKRKALEINTN
HMERKVMQRRSNPLVEYKSSQSSQETNVNVILKVELAPMDTKNDLTDDDE
ESSTSSGLSQGWSGRQLTKFNPTVGNGVYELASQEQYASSEDEDASSKDA
YTSSKYEDASSKDEDASSKDDDASKYEDASFNDENSSSDDEEVTREASNA
LDSINDFYDYPPAFTQEPEVGISEGNLDVIHQIELEEIKAALIYSTGRVA
EAINNLEKK*

LD29716.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22081-PA 387 GF22081-PA 1..282 1..279 444 39.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18802-PA 422 GG18802-PA 1..412 1..454 1019 48.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24377-PA 285 GH24377-PA 13..257 38..275 346 35.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32756-PB 459 CG32756-PB 1..459 1..459 2370 100 Plus
CG32756-PA 459 CG32756-PA 1..459 1..459 2370 100 Plus
CG12728-PB 477 CG12728-PB 1..473 1..459 2037 85.7 Plus
CG12728-PA 477 CG12728-PA 1..473 1..459 2037 85.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15317-PA 520 GI15317-PA 8..206 13..189 276 37.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11841-PA 429 GL11841-PA 24..259 38..275 427 43.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25142-PA 429 GA25142-PA 24..259 38..275 436 43 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12453-PA 348 GM12453-PA 1..340 1..365 1268 72.9 Plus
Dsec\GM12451-PA 162 GM12451-PA 1..161 1..161 737 85.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16770-PA 355 GD16770-PA 1..353 1..380 1300 72.1 Plus
Dsim\GD16768-PA 162 GD16768-PA 1..161 1..161 733 85.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14752-PA 367 GJ14752-PA 1..296 1..274 429 37.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20128-PA 349 GK20128-PA 1..274 1..275 409 34.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17564-PA 415 GE17564-PA 1..407 1..456 1122 52.3 Plus

LD29716.hyp Sequence

Translation from 51 to 1430

> LD29716.hyp
MLLKVVNINGLQHLFACTEGQHDETLTIHVFRPREKWTYSETLMKRDYQQ
RLKTLNARVKFPEELVRQVLLNKDPLHVEQDYQHPLNVLKLKYAMANFKV
FLKWEWHLRPMDAAQLYSQMFLNTMSTALGLRAQIPLLLGIIHAKDKELN
QYRTEGCQLRRVTVETQPFDLEAFMNEHKQLLDCSAAYQKAQSTFFADKP
SPNWTSLSSPWARDVAPYSSSNGYFASSKASSPKEAPRIRKRKALEINTN
HMERKVMQRRSNPLVEYKSSQSSQETNVNVILKVELAPMDTKNDLTDDDE
ESSTSSGLSQGWSGRQLTKFNPTVGNGVYELASQEQYASSEDEDASSKDA
YTSSKYEDASSKDEDASSKDDDASKYEDASFNDENSSSDDEEVTREASNA
LDSINDFYDYPPAFTQEPEVGISEGNLDVIHQIELEEIKAALIYSTGRVA
EAINNLEKK*

LD29716.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG32756-PB 459 CG32756-PB 1..459 1..459 2370 100 Plus
CG32756-PA 459 CG32756-PA 1..459 1..459 2370 100 Plus
CG12728-PB 477 CG12728-PB 1..473 1..459 2037 85.7 Plus
CG12728-PA 477 CG12728-PA 1..473 1..459 2037 85.7 Plus