Clone LD29806 Report

Search the DGRC for LD29806

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:298
Well:6
Vector:pOT2
Associated Gene/TranscriptCG10428-RA
Protein status:LD29806.pep: gold
Preliminary Size:2073
Sequenced Size:1915

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10428 2001-01-01 Release 2 assignment
CG10428 2001-09-19 Blastp of sequenced clone
CG10428 2003-01-01 Sim4 clustering to Release 3
CG10428 2008-04-29 Release 5.5 accounting
CG10428 2008-08-15 Release 5.9 accounting
CG10428 2008-12-18 5.12 accounting

Clone Sequence Records

LD29806.complete Sequence

1915 bp (1915 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058604

> LD29806.complete
CCCAGCTGGTTTATAATTTTCTCGCTAATTTATTTTATTTTCGATTTTCG
TTTAGTTTCCAATTTGTTTTGATGATCGGTTAATTAAACTATGGATCAGT
TGTACCTGGAGATCGAGATCAGCACTCAAAAAGAGACCACCATTTATACT
GGTGTGTCCTCGTTCTTGGCTTTGTTTACTTACAAATTTTTGAAAGATCC
CAAAAATGTGCGAGTAAACTTCGTTTCCACAAAGATCGAAGGCGGTAAAA
TAGCTTTACGGAGTTCCCAACTCAAAAAGGAACTGACCGACCGGCACATC
ACATGCAGGGATGCCGCATCCTTGCCTGCCATCCAGGATCTAAAACTTCC
AATCTACGAGAAGGACGGAAATACATTCATAGCAGGAACGTGTGCCGTTT
GCCGAGAGCTTATTGCAAGACAACCAAATGAGGAACTCAAGAAACTTTTA
GGCTTTAAGGGAAGCTGCCTCTTGGCTCCGTCAGAAGCATCGATTTGGAC
TAAGTTCTGTGAGGTGGATTTAGTGGCTGTTGTCAGTAAACTTCATAGTG
GGCAAGTTTTGGAATTCGTCCCCCAAGAAGTAGTGAGGTTCGAGCAGCAC
ATGAACGAACCGGTGAGGATGCATAACATCTATAAACAGGCCAGAGAGCA
GGCCAATCAGACTGAGAATGGCGGCAAGGTCAAGAGGAGAGAACGAGTGC
AAATCAAGTGCACTACACCTAAGGAAGAGCTGCTTATTGAGCACCGCTTC
GCCGAGGGCATCAGTTTCACAATTGCGGATATAATTTTGTACCCCCTTTT
GAGAATTGTCTTCCAACATTGCGGGCAGATGCTGCCCCATTTTCCACTCA
CTAGTACCTGGTTCAGCGAGATCGACTCTTTCGGCGATAAATGCGCCAGG
GTTCTAAGAGATCTTTATGTGCCGCAAGCAATTAAGACCCCTCCCGGAGA
ACTGGGAATCCCCGACTGCGAGGCCACCAGTCTGTACAAAGCCGATCCCA
AGCGATACAAGCCAAGAAATCGGATTTACACTAGTCAGTTGGAGTTGGAA
GCGGCTCTAAGTAAGCTTTCCTCGCTGCAACTGCAATTTAATTCCGATTC
GGAGCACACCTATGGCCAGCAGCTGATCGACTGGGAGCAGATTGAGCCCA
CTCATGCTAAGAGTTCAGCGCTGCCCAAGGAGAGACTCGAGCGCAAGAGG
CAGCAGCTAGAGAACTTGGCCAATGCGGTGGTTTCCCTGGCTCAACCGGG
CGACCGCATTGTGGACTTCTGCAGCGGCACAGGGCATTTGGCCATACTGC
TGGCCCTCAAGCTGCCAAATTGTACCATTATTGTGATGGAAAACAAAGCT
TTCTCCCTGCTTCAAGCTCAGAAAAGATCAAACGAATTGGGTTTGACCAA
CTGCGTTTTTTACCAATGCAACATAGATTACTTTGTCGGAGGATTCAAGA
TCGGGGCCTCTTTGCACGCGTGTGGAACGGCGACAGATATCGTTTTGCAG
CAGTGCCGGAGAGCCAAGGCACATTTTGTTTGCTGTCCTTGCTGCTACGG
TTCTCTGCAGCCCATGCCTCACATTTCGTACCCATTGAGCAAAGCGTTCC
AAAAGGTGTTAGACACAAAGGACTACTTGTACATTGCCCACTCGGCAGAT
CAGGCACACGAGATGGGGACAACCAACTGCAAGCCAGAAACCACGCTTCA
AGGACTCCACTGCATGTCCGTGGTGGACACCGATCGCCTGCTGCAGGCGG
AGGAGGCGGGCTACCAGGTCATTCTCACACGCTTAAAGCCCGAACAGTGT
ACGCCAAAGAATCACCTGCTAGTCGGACGTTTTGTTAAACAGAACTGAAC
TTACAATCTGCCACTGAGACAAAATAAATGCCTTTTTGATATGTTTTAAA
AAAAAAAAAAAAAAA

LD29806.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-RA 1929 CG10428-RA 26..1925 1..1900 9485 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18948630..18949658 869..1897 5115 99.8 Plus
chr2L 23010047 chr2L 18948113..18948579 404..870 2290 99.4 Plus
chr2L 23010047 chr2L 18947593..18947826 1..234 1170 100 Plus
chr2L 23010047 chr2L 18947885..18948057 232..404 865 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18949945..18950976 869..1900 5145 99.9 Plus
2L 23513712 2L 18949428..18949894 404..870 2335 100 Plus
2L 23513712 2L 18948908..18949141 1..234 1170 100 Plus
2L 23513712 2L 18949200..18949372 232..404 865 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18949945..18950976 869..1900 5145 99.9 Plus
2L 23513712 2L 18949428..18949894 404..870 2335 100 Plus
2L 23513712 2L 18948908..18949141 1..234 1170 100 Plus
2L 23513712 2L 18949200..18949372 232..404 865 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:28:04 has no hits.

LD29806.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:29:23 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18947593..18947826 1..234 100 -> Plus
chr2L 18947888..18948057 235..404 100 -> Plus
chr2L 18948114..18948579 405..870 99 -> Plus
chr2L 18948632..18949658 871..1897 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:19 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 1..1758 91..1848 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:51 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 1..1758 91..1848 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:05:07 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 1..1758 91..1848 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:20 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 1..1758 91..1848 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:19 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 1..1758 91..1848 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:49:54 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 12..1908 1..1897 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:51 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 12..1908 1..1897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:05:07 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 25..1921 1..1897 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:21 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 12..1908 1..1897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:19 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 25..1921 1..1897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:23 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18948908..18949141 1..234 100 -> Plus
2L 18949203..18949372 235..404 100 -> Plus
2L 18949429..18949894 405..870 100 -> Plus
2L 18949947..18950973 871..1897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:23 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18948908..18949141 1..234 100 -> Plus
2L 18949203..18949372 235..404 100 -> Plus
2L 18949429..18949894 405..870 100 -> Plus
2L 18949947..18950973 871..1897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:23 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18948908..18949141 1..234 100 -> Plus
2L 18949203..18949372 235..404 100 -> Plus
2L 18949429..18949894 405..870 100 -> Plus
2L 18949947..18950973 871..1897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:05:07 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18949947..18950973 871..1897 99   Plus
arm_2L 18948908..18949141 1..234 100 -> Plus
arm_2L 18949203..18949372 235..404 100 -> Plus
arm_2L 18949429..18949894 405..870 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:00 Download gff for LD29806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18949203..18949372 235..404 100 -> Plus
2L 18948908..18949141 1..234 100 -> Plus
2L 18949429..18949894 405..870 100 -> Plus
2L 18949947..18950973 871..1897 99   Plus

LD29806.pep Sequence

Translation from 90 to 1847

> LD29806.pep
MDQLYLEIEISTQKETTIYTGVSSFLALFTYKFLKDPKNVRVNFVSTKIE
GGKIALRSSQLKKELTDRHITCRDAASLPAIQDLKLPIYEKDGNTFIAGT
CAVCRELIARQPNEELKKLLGFKGSCLLAPSEASIWTKFCEVDLVAVVSK
LHSGQVLEFVPQEVVRFEQHMNEPVRMHNIYKQAREQANQTENGGKVKRR
ERVQIKCTTPKEELLIEHRFAEGISFTIADIILYPLLRIVFQHCGQMLPH
FPLTSTWFSEIDSFGDKCARVLRDLYVPQAIKTPPGELGIPDCEATSLYK
ADPKRYKPRNRIYTSQLELEAALSKLSSLQLQFNSDSEHTYGQQLIDWEQ
IEPTHAKSSALPKERLERKRQQLENLANAVVSLAQPGDRIVDFCSGTGHL
AILLALKLPNCTIIVMENKAFSLLQAQKRSNELGLTNCVFYQCNIDYFVG
GFKIGASLHACGTATDIVLQQCRRAKAHFVCCPCCYGSLQPMPHISYPLS
KAFQKVLDTKDYLYIAHSADQAHEMGTTNCKPETTLQGLHCMSVVDTDRL
LQAEEAGYQVILTRLKPEQCTPKNHLLVGRFVKQN*

LD29806.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15257-PA 588 GF15257-PA 1..588 1..585 2732 84.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21139-PA 585 GG21139-PA 1..585 1..585 2993 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10169-PA 586 GH10169-PA 1..586 1..581 2497 77.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-PA 585 CG10428-PA 1..585 1..585 3061 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14206-PA 588 GI14206-PA 1..588 1..584 2528 77.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18497-PA 586 GL18497-PA 1..586 1..585 2689 84 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10313-PA 586 GA10313-PA 1..586 1..585 2702 84.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17301-PA 546 GM17301-PA 1..546 1..585 2807 90.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24163-PA 264 GD24163-PA 1..257 1..257 1345 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20475-PA 589 GJ20475-PA 1..589 1..585 2550 78.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24345-PA 589 GK24345-PA 1..586 1..581 2391 74.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13213-PA 585 GE13213-PA 1..585 1..585 3016 95.2 Plus

LD29806.hyp Sequence

Translation from 90 to 1847

> LD29806.hyp
MDQLYLEIEISTQKETTIYTGVSSFLALFTYKFLKDPKNVRVNFVSTKIE
GGKIALRSSQLKKELTDRHITCRDAASLPAIQDLKLPIYEKDGNTFIAGT
CAVCRELIARQPNEELKKLLGFKGSCLLAPSEASIWTKFCEVDLVAVVSK
LHSGQVLEFVPQEVVRFEQHMNEPVRMHNIYKQAREQANQTENGGKVKRR
ERVQIKCTTPKEELLIEHRFAEGISFTIADIILYPLLRIVFQHCGQMLPH
FPLTSTWFSEIDSFGDKCARVLRDLYVPQAIKTPPGELGIPDCEATSLYK
ADPKRYKPRNRIYTSQLELEAALSKLSSLQLQFNSDSEHTYGQQLIDWEQ
IEPTHAKSSALPKERLERKRQQLENLANAVVSLAQPGDRIVDFCSGTGHL
AILLALKLPNCTIIVMENKAFSLLQAQKRSNELGLTNCVFYQCNIDYFVG
GFKIGASLHACGTATDIVLQQCRRAKAHFVCCPCCYGSLQPMPHISYPLS
KAFQKVLDTKDYLYIAHSADQAHEMGTTNCKPETTLQGLHCMSVVDTDRL
LQAEEAGYQVILTRLKPEQCTPKNHLLVGRFVKQN*

LD29806.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-PA 585 CG10428-PA 1..585 1..585 3061 100 Plus