Clone LD29822 Report

Search the DGRC for LD29822

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:298
Well:22
Vector:pOT2
Associated Gene/TranscriptCG9107-RA
Protein status:LD29822.pep: gold
Preliminary Size:1133
Sequenced Size:933

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9107 2001-01-01 Release 2 assignment
CG9107 2001-10-10 Blastp of sequenced clone
CG9107 2003-01-01 Sim4 clustering to Release 3
CG9107 2008-04-29 Release 5.5 accounting
CG9107 2008-08-15 Release 5.9 accounting
CG9107 2008-12-18 5.12 accounting

Clone Sequence Records

LD29822.complete Sequence

933 bp (933 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061376

> LD29822.complete
TCACACTGGCACACAACGTGTTTACAAAACGTTGTTTAGTTAATTTACCG
CGAATTACACAAAATGGTTGAACTGGAGGGCTATGTAGTGGTGCCGCTGC
GCACGACGCCGAAGGCGCAACATTGCCACAGTATCTACATGCGGGAGCAC
TTCATCCGTCTGATGGATCCCAACAAACCGAAGGGACGCACACTCTTTCT
GCTCAACGTGCCGCCCTACGTGACAGAGGACAGCCTGCGCACGGTCTTCG
GCCGGGCGGGGAGCATCGAGGCCGTGGAGTTCGCCGCCAAACCGGGCAAG
GAGGAGACCATCAAGTGGTACGAGGGCACCGGCGAACCCTTCTCCAACAC
TCGTCCGCCCTTCGTCTTCAAGGTGGCCTACATAGTGTTCGAGAAGAACA
GCAGCATCGGCAAGGCGCTGGCACTAAAGAGCATTGACCTGTTCAACAGC
AGCGGCGAGTGCATCGTCAAGACCGGCATGGAGCTGTGGCACGAGGAGTA
CGACTGCAATTACCTGCTGGATGCGCAAAAGACGAAGCTACAGATCAGCA
AGTACATGGCCGGCTACGACAAGAGGGAGCGAGCGGCGGCACAGGCGGCC
AAGACCGGAGAGGCCGACGCCGACGGATGGGTCACCGTCGGCAAGGAGGG
TCGCAATGCTGGCTTCGAGCAGAAGGCGTCCGTAATTGGACGCCTGGAGG
AGAAGGTGGCCAAGGGCAATAAGACCAAGGAGCTAAAGAACTTCTACACC
TTCCAAATACGCGAGAGCAAGATGCAGAATATCGTCGAGATGCGCAAGAA
GTTCGAGGAGGAAAAGCGAAAGATCGGGCTGCTCAAGCAGTCGCGCCGCT
TCAAACCATTTTAGTCCGTACGCATAGGTTAAGCATCGAATAAAACTTCT
TTATGACACCAAAAAAAAAAAAAAAAAAAAAAA

LD29822.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9107-RB 1222 CG9107-RB 84..994 1..911 4555 100 Plus
CG9107.a 1593 CG9107.a 84..994 1..911 4555 100 Plus
CG9107-RA 1222 CG9107-RA 84..994 1..911 4555 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6022614..6023437 910..87 4120 100 Minus
chr2L 23010047 chr2L 6023491..6023578 88..1 440 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6023562..6024386 911..87 4125 100 Minus
2L 23513712 2L 6024440..6024527 88..1 440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6023562..6024386 911..87 4125 100 Minus
2L 23513712 2L 6024440..6024527 88..1 440 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:58:25 has no hits.

LD29822.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:59:15 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6022614..6023435 89..910 100 <- Minus
chr2L 6023491..6023578 1..88 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:24 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9107-RB 1..801 64..864 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:42:19 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9107-RB 1..801 64..864 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:23:12 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9107-RA 1..801 64..864 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:11:12 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9107-RB 1..801 64..864 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:18 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9107-RA 1..801 64..864 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:24:34 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9107-RB 9..918 1..910 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:42:18 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9107-RB 9..918 1..910 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:23:12 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9107-RA 13..922 1..910 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:11:12 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9107-RB 9..918 1..910 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:18 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9107-RA 13..922 1..910 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:15 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6023563..6024384 89..910 100 <- Minus
2L 6024440..6024527 1..88 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:15 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6023563..6024384 89..910 100 <- Minus
2L 6024440..6024527 1..88 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:15 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6023563..6024384 89..910 100 <- Minus
2L 6024440..6024527 1..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:23:12 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6023563..6024384 89..910 100 <- Minus
arm_2L 6024440..6024527 1..88 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:31 Download gff for LD29822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6024440..6024527 1..88 100   Minus
2L 6023563..6024384 89..910 100 <- Minus

LD29822.pep Sequence

Translation from 63 to 863

> LD29822.pep
MVELEGYVVVPLRTTPKAQHCHSIYMREHFIRLMDPNKPKGRTLFLLNVP
PYVTEDSLRTVFGRAGSIEAVEFAAKPGKEETIKWYEGTGEPFSNTRPPF
VFKVAYIVFEKNSSIGKALALKSIDLFNSSGECIVKTGMELWHEEYDCNY
LLDAQKTKLQISKYMAGYDKRERAAAQAAKTGEADADGWVTVGKEGRNAG
FEQKASVIGRLEEKVAKGNKTKELKNFYTFQIRESKMQNIVEMRKKFEEE
KRKIGLLKQSRRFKPF*

LD29822.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14285-PA 266 GF14285-PA 1..266 1..266 1194 82.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10149-PA 266 GG10149-PA 1..266 1..266 1270 91.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10710-PA 266 GH10710-PA 1..266 1..266 1053 73.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9107-PB 266 CG9107-PB 1..266 1..266 1385 100 Plus
CG9107-PA 266 CG9107-PA 1..266 1..266 1385 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11291-PA 269 GI11291-PA 4..269 1..266 1075 73.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19088-PA 235 GL19088-PA 1..233 1..248 936 72.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21547-PA 266 GA21547-PA 1..266 1..266 1118 79.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17973-PA 266 GM17973-PA 1..266 1..266 1384 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22609-PA 266 GD22609-PA 1..266 1..266 1313 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12494-PA 266 GJ12494-PA 1..266 1..266 1104 73.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15401-PA 266 GK15401-PA 1..266 1..266 1156 79.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18957-PA 266 GE18957-PA 1..266 1..266 1271 94 Plus

LD29822.hyp Sequence

Translation from 63 to 863

> LD29822.hyp
MVELEGYVVVPLRTTPKAQHCHSIYMREHFIRLMDPNKPKGRTLFLLNVP
PYVTEDSLRTVFGRAGSIEAVEFAAKPGKEETIKWYEGTGEPFSNTRPPF
VFKVAYIVFEKNSSIGKALALKSIDLFNSSGECIVKTGMELWHEEYDCNY
LLDAQKTKLQISKYMAGYDKRERAAAQAAKTGEADADGWVTVGKEGRNAG
FEQKASVIGRLEEKVAKGNKTKELKNFYTFQIRESKMQNIVEMRKKFEEE
KRKIGLLKQSRRFKPF*

LD29822.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9107-PB 266 CG9107-PB 1..266 1..266 1385 100 Plus
CG9107-PA 266 CG9107-PA 1..266 1..266 1385 100 Plus