BDGP Sequence Production Resources |
Search the DGRC for LD29847
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 298 |
Well: | 47 |
Vector: | pOT2 |
Associated Gene/Transcript | Sec61alpha-RA |
Protein status: | LD29847.pep: gold |
Preliminary Size: | 1785 |
Sequenced Size: | 1652 |
Gene | Date | Evidence |
---|---|---|
CG9539 | 2001-01-01 | Release 2 assignment |
CG9539 | 2001-11-29 | Blastp of sequenced clone |
CG9539 | 2003-01-01 | Sim4 clustering to Release 3 |
Sec61alpha | 2008-04-29 | Release 5.5 accounting |
Sec61alpha | 2008-08-15 | Release 5.9 accounting |
Sec61alpha | 2008-12-18 | 5.12 accounting |
1652 bp (1652 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069569
> LD29847.complete GCGTTCGCTGTGCAGTGAAAAGTGAGACTTTCTACTGTTCGCGTAGAAAG TGCAATAACCAAGCCACCCACTCAGTGCCCAGACTAGCAACACAAGTCCG GCAAAATGGGAATCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATA CTGCCGGAAATCGCAAAACCGGAGCGCAAGATCCAATTCAGGGAGAAAGT GCTATGGACTGCGATCACCCTGTTCATCTTCCTGGTGTGCTGCCAGATCC CGCTTTTCGGTATCATGAGCTCAGACTCGGCGGATCCCTTCTACTGGATC CGTGTGATCCTGGCCTCCAACCGTGGTACGCTCATGGAGCTGGGTATCTC GCCCATCGTGACCTCTGGCCTCATTATGCAGCTGCTGGCCGGAGCAAAGA TCATTGAGGTCGGTGATACGCCCAAGGATCGTGCTCTGTTCAACGGTGCT CAGAAGCTCTTCGGCATGGTGATCACCATTGGTCAGGCCATCGTCTATGT GATGACTGGCATGTACGGCGATCCGTCGGAGATCGGCGCCGGTGTCTGCC TGCTGATCATCATCCAGCTGTTCGCCGCTGGTTTGATTGTGCTGCTGCTG GACGAGCTCCTGCAGAAGGGCTATGGACTGGGATCGGGAATTTCCCTGTT CATTGCCACCAACATTTGCGAGACGATTGTGTGGAAGGCATTCAGCCCCA CCACCGTGACGACGGGACGCGGTACCGAGTTCGAGGGCGCTGTGATTGCC CTGTTCCATCTGATGGCCACCAGGAACGATAAGGTGCGCGCTCTGCGCGA GGCCTTCTATCGCCAGAACCTGCCCAATCTGATGAACCTGCTGGCCACCG TGCTGGTGTTCGCCGTGGTCATATACTTCCAAGGCTTCCGCGTGGACCTA CCCATCAAGAGCGCCCGTTACCGCGGCCAGTACAGCAGCTATCCCATCAA GCTGTTCTACACCTCCAACATTCCCATCATCCTGCAGTCTGCGCTCGTGT CCAACTTGTACGTCATCTCCCAGATGCTGGCTGTCAAGTTCCAGGGCAAC TTCTTCATTAACCTTCTGGGTGTGTGGGCTGATGTTGGAGGCGGCGGCCC GGCTCGCTCCTATCCCATCGGTGGTCTGTGCTACTATCTTTCGCCCCCAG AGAGCGTGGGCCACATCCTGACCGACCCCATTCACGCGTTGCTCTACATT GTCTTCATGTTGGGCTCGTGCGCCTTCTTCTCCAAGACCTGGATCGATGT GTCCGGCAGCTCAGCCAAGGATGTTGCCAAGCAGCTGAAGGAGCAGCACA TGGTGATGCGTGGCCATCGCGAGAACTCGATGATCCACGAGCTCAACCGC TACATCCCAACGGCGGCTGCTTTCGGTGGTCTCTGCATCGGAGCTCTGTC TGTGATGGCCGACTTCCTGGGGGCCATCGGCTCCGGTACGGGTATCCTGT TGGCTGTGACCATCATCTACCAATACTTTGAGATTTTCGTTAAGGAGCAG TCCGAAATGGGCGGCATGGGCACGCTGCTGTTCTAAGCAGTCAAGAAGAT CACCTGCGATCCAATCAGCAACAACTAATACTTCATCATACTTCCCATAC GCTCGCTCCCATTAAAACAAACTTAATAACCTGCAAAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sec61alpha-RA | 2185 | Sec61alpha-RA | 145..1778 | 1..1634 | 8170 | 100 | Plus |
Sec61alpha.a | 2028 | Sec61alpha.a | 168..1621 | 181..1634 | 7270 | 100 | Plus |
Sec61alpha.a | 2028 | Sec61alpha.a | 56..167 | 1..112 | 560 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6476942..6478037 | 1274..179 | 5450 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 6476509..6476870 | 1634..1273 | 1810 | 100 | Minus |
chr2L | 23010047 | chr2L | 6479297..6479408 | 112..1 | 560 | 100 | Minus |
chr2L | 23010047 | chr2L | 6479007..6479074 | 180..113 | 340 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6477969..6479064 | 1274..179 | 5480 | 100 | Minus |
2L | 23513712 | 2L | 6477536..6477897 | 1634..1273 | 1810 | 100 | Minus |
2L | 23513712 | 2L | 6480324..6480435 | 112..1 | 560 | 100 | Minus |
2L | 23513712 | 2L | 6480034..6480101 | 180..113 | 340 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6477969..6479064 | 1274..179 | 5480 | 100 | Minus |
2L | 23513712 | 2L | 6477536..6477897 | 1634..1273 | 1810 | 100 | Minus |
2L | 23513712 | 2L | 6480324..6480435 | 112..1 | 560 | 100 | Minus |
2L | 23513712 | 2L | 6480034..6480101 | 180..113 | 340 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6476509..6476870 | 1273..1634 | 100 | <- | Minus |
chr2L | 6476944..6478035 | 181..1272 | 99 | <- | Minus |
chr2L | 6479007..6479074 | 113..180 | 100 | <- | Minus |
chr2L | 6479297..6479408 | 1..112 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec61alpha-RA | 1..1431 | 106..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec61alpha-RA | 1..1431 | 106..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec61alpha-RA | 1..1431 | 106..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec61alpha-RA | 1..1431 | 106..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec61alpha-RA | 1..1431 | 106..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec61alpha-RA | 55..1688 | 1..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec61alpha-RA | 55..1688 | 1..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec61alpha-RA | 32..1665 | 1..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec61alpha-RA | 55..1688 | 1..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec61alpha-RA | 32..1665 | 1..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6477536..6477897 | 1273..1634 | 100 | <- | Minus |
2L | 6477971..6479062 | 181..1272 | 100 | <- | Minus |
2L | 6480034..6480101 | 113..180 | 100 | <- | Minus |
2L | 6480324..6480435 | 1..112 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6477536..6477897 | 1273..1634 | 100 | <- | Minus |
2L | 6477971..6479062 | 181..1272 | 100 | <- | Minus |
2L | 6480034..6480101 | 113..180 | 100 | <- | Minus |
2L | 6480324..6480435 | 1..112 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6477536..6477897 | 1273..1634 | 100 | <- | Minus |
2L | 6477971..6479062 | 181..1272 | 100 | <- | Minus |
2L | 6480034..6480101 | 113..180 | 100 | <- | Minus |
2L | 6480324..6480435 | 1..112 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6477536..6477897 | 1273..1634 | 100 | <- | Minus |
arm_2L | 6477971..6479062 | 181..1272 | 100 | <- | Minus |
arm_2L | 6480034..6480101 | 113..180 | 100 | <- | Minus |
arm_2L | 6480324..6480435 | 1..112 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6477536..6477897 | 1273..1634 | 100 | <- | Minus |
2L | 6477971..6479062 | 181..1272 | 100 | <- | Minus |
2L | 6480034..6480101 | 113..180 | 100 | <- | Minus |
2L | 6480324..6480435 | 1..112 | 100 | Minus |
Translation from 105 to 1535
> LD29847.pep MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPL FGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKII EVGDTPKDRALFNGAQKLFGMVITIGQAIVYVMTGMYGDPSEIGAGVCLL IIIQLFAAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTT VTTGRGTEFEGAVIALFHLMATRNDKVRALREAFYRQNLPNLMNLLATVL VFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN LYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPES VGHILTDPIHALLYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQHMV MRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSGTGILLA VTIIYQYFEIFVKEQSEMGGMGTLLF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15706-PA | 476 | GF15706-PA | 1..476 | 1..476 | 2501 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23618-PA | 476 | GG23618-PA | 1..476 | 1..476 | 2501 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13249-PA | 476 | GH13249-PA | 1..476 | 1..476 | 2494 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sec61alpha-PB | 476 | CG9539-PB | 1..476 | 1..476 | 2430 | 100 | Plus |
Sec61alpha-PA | 476 | CG9539-PA | 1..476 | 1..476 | 2430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17288-PA | 476 | GI17288-PA | 1..476 | 1..476 | 2499 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26103-PA | 476 | GL26103-PA | 1..476 | 1..476 | 2490 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21865-PA | 476 | GA21865-PA | 1..476 | 1..476 | 2490 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17934-PA | 476 | GM17934-PA | 1..476 | 1..476 | 2501 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22572-PA | 476 | GD22572-PA | 1..476 | 1..476 | 2501 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17897-PA | 476 | GJ17897-PA | 1..476 | 1..476 | 2499 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18692-PA | 476 | GK18692-PA | 1..476 | 1..476 | 2501 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18437-PA | 476 | GE18437-PA | 1..476 | 1..476 | 2501 | 100 | Plus |
Translation from 105 to 1535
> LD29847.hyp MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPL FGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKII EVGDTPKDRALFNGAQKLFGMVITIGQAIVYVMTGMYGDPSEIGAGVCLL IIIQLFAAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTT VTTGRGTEFEGAVIALFHLMATRNDKVRALREAFYRQNLPNLMNLLATVL VFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN LYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPES VGHILTDPIHALLYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQHMV MRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSGTGILLA VTIIYQYFEIFVKEQSEMGGMGTLLF*