Clone LD29847 Report

Search the DGRC for LD29847

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:298
Well:47
Vector:pOT2
Associated Gene/TranscriptSec61alpha-RA
Protein status:LD29847.pep: gold
Preliminary Size:1785
Sequenced Size:1652

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9539 2001-01-01 Release 2 assignment
CG9539 2001-11-29 Blastp of sequenced clone
CG9539 2003-01-01 Sim4 clustering to Release 3
Sec61alpha 2008-04-29 Release 5.5 accounting
Sec61alpha 2008-08-15 Release 5.9 accounting
Sec61alpha 2008-12-18 5.12 accounting

Clone Sequence Records

LD29847.complete Sequence

1652 bp (1652 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069569

> LD29847.complete
GCGTTCGCTGTGCAGTGAAAAGTGAGACTTTCTACTGTTCGCGTAGAAAG
TGCAATAACCAAGCCACCCACTCAGTGCCCAGACTAGCAACACAAGTCCG
GCAAAATGGGAATCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATA
CTGCCGGAAATCGCAAAACCGGAGCGCAAGATCCAATTCAGGGAGAAAGT
GCTATGGACTGCGATCACCCTGTTCATCTTCCTGGTGTGCTGCCAGATCC
CGCTTTTCGGTATCATGAGCTCAGACTCGGCGGATCCCTTCTACTGGATC
CGTGTGATCCTGGCCTCCAACCGTGGTACGCTCATGGAGCTGGGTATCTC
GCCCATCGTGACCTCTGGCCTCATTATGCAGCTGCTGGCCGGAGCAAAGA
TCATTGAGGTCGGTGATACGCCCAAGGATCGTGCTCTGTTCAACGGTGCT
CAGAAGCTCTTCGGCATGGTGATCACCATTGGTCAGGCCATCGTCTATGT
GATGACTGGCATGTACGGCGATCCGTCGGAGATCGGCGCCGGTGTCTGCC
TGCTGATCATCATCCAGCTGTTCGCCGCTGGTTTGATTGTGCTGCTGCTG
GACGAGCTCCTGCAGAAGGGCTATGGACTGGGATCGGGAATTTCCCTGTT
CATTGCCACCAACATTTGCGAGACGATTGTGTGGAAGGCATTCAGCCCCA
CCACCGTGACGACGGGACGCGGTACCGAGTTCGAGGGCGCTGTGATTGCC
CTGTTCCATCTGATGGCCACCAGGAACGATAAGGTGCGCGCTCTGCGCGA
GGCCTTCTATCGCCAGAACCTGCCCAATCTGATGAACCTGCTGGCCACCG
TGCTGGTGTTCGCCGTGGTCATATACTTCCAAGGCTTCCGCGTGGACCTA
CCCATCAAGAGCGCCCGTTACCGCGGCCAGTACAGCAGCTATCCCATCAA
GCTGTTCTACACCTCCAACATTCCCATCATCCTGCAGTCTGCGCTCGTGT
CCAACTTGTACGTCATCTCCCAGATGCTGGCTGTCAAGTTCCAGGGCAAC
TTCTTCATTAACCTTCTGGGTGTGTGGGCTGATGTTGGAGGCGGCGGCCC
GGCTCGCTCCTATCCCATCGGTGGTCTGTGCTACTATCTTTCGCCCCCAG
AGAGCGTGGGCCACATCCTGACCGACCCCATTCACGCGTTGCTCTACATT
GTCTTCATGTTGGGCTCGTGCGCCTTCTTCTCCAAGACCTGGATCGATGT
GTCCGGCAGCTCAGCCAAGGATGTTGCCAAGCAGCTGAAGGAGCAGCACA
TGGTGATGCGTGGCCATCGCGAGAACTCGATGATCCACGAGCTCAACCGC
TACATCCCAACGGCGGCTGCTTTCGGTGGTCTCTGCATCGGAGCTCTGTC
TGTGATGGCCGACTTCCTGGGGGCCATCGGCTCCGGTACGGGTATCCTGT
TGGCTGTGACCATCATCTACCAATACTTTGAGATTTTCGTTAAGGAGCAG
TCCGAAATGGGCGGCATGGGCACGCTGCTGTTCTAAGCAGTCAAGAAGAT
CACCTGCGATCCAATCAGCAACAACTAATACTTCATCATACTTCCCATAC
GCTCGCTCCCATTAAAACAAACTTAATAACCTGCAAAAAAAAAAAAAAAA
AA

LD29847.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Sec61alpha-RA 2185 Sec61alpha-RA 145..1778 1..1634 8170 100 Plus
Sec61alpha.a 2028 Sec61alpha.a 168..1621 181..1634 7270 100 Plus
Sec61alpha.a 2028 Sec61alpha.a 56..167 1..112 560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6476942..6478037 1274..179 5450 99.8 Minus
chr2L 23010047 chr2L 6476509..6476870 1634..1273 1810 100 Minus
chr2L 23010047 chr2L 6479297..6479408 112..1 560 100 Minus
chr2L 23010047 chr2L 6479007..6479074 180..113 340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6477969..6479064 1274..179 5480 100 Minus
2L 23513712 2L 6477536..6477897 1634..1273 1810 100 Minus
2L 23513712 2L 6480324..6480435 112..1 560 100 Minus
2L 23513712 2L 6480034..6480101 180..113 340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6477969..6479064 1274..179 5480 100 Minus
2L 23513712 2L 6477536..6477897 1634..1273 1810 100 Minus
2L 23513712 2L 6480324..6480435 112..1 560 100 Minus
2L 23513712 2L 6480034..6480101 180..113 340 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:36:58 has no hits.

LD29847.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:37:54 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6476509..6476870 1273..1634 100 <- Minus
chr2L 6476944..6478035 181..1272 99 <- Minus
chr2L 6479007..6479074 113..180 100 <- Minus
chr2L 6479297..6479408 1..112 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:27 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
Sec61alpha-RA 1..1431 106..1536 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:25:08 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
Sec61alpha-RA 1..1431 106..1536 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:16 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
Sec61alpha-RA 1..1431 106..1536 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:52:12 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
Sec61alpha-RA 1..1431 106..1536 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:35:54 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
Sec61alpha-RA 1..1431 106..1536 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:00:55 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
Sec61alpha-RA 55..1688 1..1634 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:25:08 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
Sec61alpha-RA 55..1688 1..1634 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:16 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
Sec61alpha-RA 32..1665 1..1634 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:52:12 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
Sec61alpha-RA 55..1688 1..1634 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:35:54 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
Sec61alpha-RA 32..1665 1..1634 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:54 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6477536..6477897 1273..1634 100 <- Minus
2L 6477971..6479062 181..1272 100 <- Minus
2L 6480034..6480101 113..180 100 <- Minus
2L 6480324..6480435 1..112 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:54 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6477536..6477897 1273..1634 100 <- Minus
2L 6477971..6479062 181..1272 100 <- Minus
2L 6480034..6480101 113..180 100 <- Minus
2L 6480324..6480435 1..112 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:54 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6477536..6477897 1273..1634 100 <- Minus
2L 6477971..6479062 181..1272 100 <- Minus
2L 6480034..6480101 113..180 100 <- Minus
2L 6480324..6480435 1..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:16 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6477536..6477897 1273..1634 100 <- Minus
arm_2L 6477971..6479062 181..1272 100 <- Minus
arm_2L 6480034..6480101 113..180 100 <- Minus
arm_2L 6480324..6480435 1..112 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:26 Download gff for LD29847.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6477536..6477897 1273..1634 100 <- Minus
2L 6477971..6479062 181..1272 100 <- Minus
2L 6480034..6480101 113..180 100 <- Minus
2L 6480324..6480435 1..112 100   Minus

LD29847.pep Sequence

Translation from 105 to 1535

> LD29847.pep
MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPL
FGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKII
EVGDTPKDRALFNGAQKLFGMVITIGQAIVYVMTGMYGDPSEIGAGVCLL
IIIQLFAAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTT
VTTGRGTEFEGAVIALFHLMATRNDKVRALREAFYRQNLPNLMNLLATVL
VFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
LYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPES
VGHILTDPIHALLYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQHMV
MRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSGTGILLA
VTIIYQYFEIFVKEQSEMGGMGTLLF*

LD29847.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15706-PA 476 GF15706-PA 1..476 1..476 2501 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23618-PA 476 GG23618-PA 1..476 1..476 2501 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13249-PA 476 GH13249-PA 1..476 1..476 2494 99.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Sec61alpha-PB 476 CG9539-PB 1..476 1..476 2430 100 Plus
Sec61alpha-PA 476 CG9539-PA 1..476 1..476 2430 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17288-PA 476 GI17288-PA 1..476 1..476 2499 99.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26103-PA 476 GL26103-PA 1..476 1..476 2490 99.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21865-PA 476 GA21865-PA 1..476 1..476 2490 99.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17934-PA 476 GM17934-PA 1..476 1..476 2501 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22572-PA 476 GD22572-PA 1..476 1..476 2501 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17897-PA 476 GJ17897-PA 1..476 1..476 2499 99.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18692-PA 476 GK18692-PA 1..476 1..476 2501 100 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18437-PA 476 GE18437-PA 1..476 1..476 2501 100 Plus

LD29847.hyp Sequence

Translation from 105 to 1535

> LD29847.hyp
MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPL
FGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKII
EVGDTPKDRALFNGAQKLFGMVITIGQAIVYVMTGMYGDPSEIGAGVCLL
IIIQLFAAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTT
VTTGRGTEFEGAVIALFHLMATRNDKVRALREAFYRQNLPNLMNLLATVL
VFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
LYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPES
VGHILTDPIHALLYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQHMV
MRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSGTGILLA
VTIIYQYFEIFVKEQSEMGGMGTLLF*

LD29847.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Sec61alpha-PB 476 CG9539-PB 1..476 1..476 2430 100 Plus
Sec61alpha-PA 476 CG9539-PA 1..476 1..476 2430 100 Plus