Clone LD29875 Report

Search the DGRC for LD29875

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:298
Well:75
Vector:pOT2
Associated Gene/TranscriptCG5742-RA
Protein status:LD29875.pep: gold
Preliminary Size:3205
Sequenced Size:2936

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5742 2001-01-01 Release 2 assignment
CG5742 2001-09-19 Blastp of sequenced clone
CG5742 2003-01-01 Sim4 clustering to Release 3
CG5742 2008-04-29 Release 5.5 accounting
CG5742 2008-08-15 Release 5.9 accounting
CG5742 2008-12-18 5.12 accounting

Clone Sequence Records

LD29875.complete Sequence

2936 bp (2936 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058606

> LD29875.complete
CCAGATAAACTAAAAAAATCGAATTGATTTATTTAATTCCACGGAAGACG
CGACGTTGACTGAAAAGCTAAGACATGTCCAAAGAAAAGGAGGACGAGTG
CGACAAGCACAAACAGCAGGCGACGGCGGACGCCAAGTCCACGTCGAGCG
AGGATTCCGATGAGTACCAATCGGCCGGTGAGGGCGAGGATGGAGACGGC
GATGGTGACGGTGATTCCCCAGCGGAGCGCCCGCCTGACAAAACCAGCCC
CACGGTCGCCGTTGCGCCCACAGCAAAGGCAGCATCGCCACTGCCCACTG
TGAAGCCAGCATCCGAGGCCCTGGACTTTCCTATGCACCGGAGTGTTTTC
GAGGACGACATCAAGTCGCTGCAGCGACGACTTCTATTGAGCACGGCCCA
AGACGAAGTGGGTAGAAAGGATAAGCACGGCAATACGCCACTCCATCTGG
CCGTAATGCTGGGCAGAAAGCACGCTGTCCGTTTGCTTCTGGCCCAAAAC
GCCCCCGTAAAGATCAAGAACAATGAGGGCTGGTCCCCGCTGTCCGAGGC
CATTAGCTACGGCGACCGCCAGACAATCACCCAGGTGCTGCGAATGCTAA
AGCTGCAGTCCCGCGAACACATGGAGAGTCGGCGCGAGAAGCTGGTCAAT
GCGCTGCGCCAGATGCAGGACTTCTACATGGAATTCAAGTGGGATTTTCA
ATCATGGCTGCCACTGGTTTCCCGCATCCTGCCCTCGGACATCTGCCGGC
TTTACAAGTCGGGCGCCTCCATTCGTTTGGACACCACACTGGTGGACTTC
AATGATATGCGTTGGGAGCGAGGGGACATATCGTTCTTGTTTAGAGGTGA
GGCGCCGGCAAGGGAATCGCTGGTTCTGTTGGACAATGAGCAGGAATGCT
TTCAGCGGCTGCGATACGAGGAATCAGACATGGAGGATGAGGTGGATGTG
CTCATGTCGACCGATATACTGGCCACCCAGATGTCCACCAAGACGATTCA
GTTCGCACGGGCGCAACGCGGATGGATATTCCGCGCCAATCGCAAGGAGC
TCATTGGGGGCCAATACCAGTGCGAAATTTACACCATCCAGGGCTTAATC
CTGAAGCAGCGTAAGAGGCGGGAACACCTGTCACACGAGGATCTACAAAA
GAACCGCGCCATTGTCGAGACTATTACCAAGGGTGCCAGCCAGCAGCCGG
ATACGCGTCGCTCCAGTCTAGGCAGCCAGCACACGGCCACGCCGCCGGAG
ACCAATACACCAACGGCTCCGAATGGCATCTCACTGCCGGAGCTGCCGCG
TCGCAGCTCGCTGCAGGCCCCGCCGCCTCCCACAGTCACCTGGCGACAGT
ATCTCGATGCGGAGGTCGGTAAGTGCCCGCAACTGGGTCGGACACCCGTG
CACAAGCAATCCAACAAGACGCTGCGAGCAACGGTAGCCATGAGCAAGGA
CTTTCCACTTAGCGTGGATATGCTGCTGGACGTTCTGGAAGTCGTGGCAC
CCCTAAAACACATCAACAAGCTGCGCGAATTCGTCACGCTGAAGCTACCG
ACGGGCTTTCCCGTGAAGATTGAGATACCCGTACTGCACACGGTGACCGC
CAAGGTGACGTTCCAAAAATTCGAGTTCCGCGACAACATCCCCGCCAAGA
TGTTCGAGGTGCCATCGCACTATTGGGAGGATGTGCGTCGCTTTCAGGAC
TTATGACCAGGCGACGGAGAAGCCGCGCCAAAGGCCAAAGCAGCAACCGG
CGGACCGACTGGAGCAGCGACTGGCGTTCATGTCGACTTGAATCGCAATG
CGTCCTCGCCCTCCATTGCGGAGTTCGATTGATGAGGCGTCTACCGCGAC
ACACGCCTCTCATTCTGCCTGTCCGCCTGTCCCACACATTTCATGTCGCG
TTTAGTGATCACTCCAGCAAAAGTCGGAGGATACAGCTCGAACGCGGGCG
GCTTGTTTATGTATGTATGCTTAAGAGGAAAACACCCACACACAAAATTG
CAATTTTCACCATGAGTGAATCCCATACTCTCCCGGTCCAAATCCAAATT
GGACGCTCTGAAAATTGCAATTTTACATTTACGTTTTGTTATGTACTGTA
TTTGTTTTTAGTCGCCTTCGCAAGAAGGGTCATTACTTAGTAGTATTTAT
TATGCACAGGCTCGTCATTTTTAACAGCCCGAGTGAATCACATCAACTTC
AAATGGTGTTTTCAGATTGCCACCCTAATTGGTGGGGTGCGGTCCCAAAA
CAGCTGCTCCACTGGCGAGGAATCCAGAAGATCACTTTCCCAAATTGCCT
TTCGTATCTGCCGATAATCGCGGCGGTACGAAGGTAAAACTAAATGTCCA
ATCTGCAGAATTGCTTGCTGATAGCCACGTTGACAGCAGCAATTTGCTAA
GTTTTTAGTTTGTAAGTGATTAGATGTTGTCCAATATCCGATCGTTTCGC
AAAACGTTTATCATTTTATTTATGTCCATACCCCCTTTCCGTGTTTAGTG
CAATTTCATACATAGTTTTAAGGTCAACTGGGAAAGAAGACAGATGTTTG
TTTTCGAAATCGAAAAAAAAAGAATCCACGTAACCGCTTGAAGAACGTTC
ATCAAACAATTGCGTTCTTCTTCTACTTAGGCTATGTGTACTAGAGAATC
GATCGCAAAACCATTTCCATTTCGCCTTTCCTCGCAATAGTCTCAAGTAT
TTAGAAGTGCGCAAAACTGAGACCAGCAGCTTCACAAATCAATTATAAAT
AAATATTTATACATACGCATGTAACCAAGTATTTATTTAGTTCCATCTTA
GCCAATTATTTATACTGCAAAGAGCGTCTGTACTTGCTTTGTATTTGTTA
ATCAACAAAACCAGCTAGCACCGATTTAGTTTCGGTTCGCATTGCTTTGC
TGTGATTTTGCCCTCTTTAAAAAAAAAAAAAAAAAA

LD29875.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5742-RA 2924 CG5742-RA 7..2924 1..2918 14590 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14035617..14038535 2918..1 14470 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18148451..18151381 2931..1 14640 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18149650..18152580 2931..1 14640 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 05:14:59 has no hits.

LD29875.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:15:42 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14035617..14038535 1..2918 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:29 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5742-RA 1..1632 75..1706 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:16 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5742-RA 1..1632 75..1706 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:08:52 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5742-RC 1..1758 75..1832 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:25 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5742-RA 1..1632 75..1706 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:02 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5742-RC 1..1758 75..1832 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:45 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5742-RA 7..2924 1..2918 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:15 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5742-RA 7..2924 1..2918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:52 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5742-RA 30..2947 1..2918 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:25 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5742-RA 7..2924 1..2918 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:02 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5742-RA 30..2947 1..2918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:42 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18148464..18151381 1..2918 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:42 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18148464..18151381 1..2918 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:42 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18148464..18151381 1..2918 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:52 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14035969..14038886 1..2918 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:33 Download gff for LD29875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18149663..18152580 1..2918 100   Minus

LD29875.pep Sequence

Translation from 74 to 1705

> LD29875.pep
MSKEKEDECDKHKQQATADAKSTSSEDSDEYQSAGEGEDGDGDGDGDSPA
ERPPDKTSPTVAVAPTAKAASPLPTVKPASEALDFPMHRSVFEDDIKSLQ
RRLLLSTAQDEVGRKDKHGNTPLHLAVMLGRKHAVRLLLAQNAPVKIKNN
EGWSPLSEAISYGDRQTITQVLRMLKLQSREHMESRREKLVNALRQMQDF
YMEFKWDFQSWLPLVSRILPSDICRLYKSGASIRLDTTLVDFNDMRWERG
DISFLFRGEAPARESLVLLDNEQECFQRLRYEESDMEDEVDVLMSTDILA
TQMSTKTIQFARAQRGWIFRANRKELIGGQYQCEIYTIQGLILKQRKRRE
HLSHEDLQKNRAIVETITKGASQQPDTRRSSLGSQHTATPPETNTPTAPN
GISLPELPRRSSLQAPPPPTVTWRQYLDAEVGKCPQLGRTPVHKQSNKTL
RATVAMSKDFPLSVDMLLDVLEVVAPLKHINKLREFVTLKLPTGFPVKIE
IPVLHTVTAKVTFQKFEFRDNIPAKMFEVPSHYWEDVRRFQDL*

LD29875.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12280-PA 542 GF12280-PA 1..542 1..543 2533 88 Plus
Dana\GF13381-PA 642 GF13381-PA 10..461 84..513 489 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20989-PA 541 GG20989-PA 1..541 1..543 2821 96.9 Plus
Dere\GG20921-PA 637 GG20921-PA 10..505 84..539 512 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20848-PA 531 GH20848-PA 1..531 1..543 2155 76.1 Plus
Dgri\GH23148-PA 649 GH23148-PA 9..503 83..533 505 27.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5742-PC 585 CG5742-PC 1..543 1..543 2816 100 Plus
CG5742-PB 543 CG5742-PB 1..543 1..543 2816 100 Plus
CG5742-PA 543 CG5742-PA 1..543 1..543 2816 100 Plus
CG15118-PE 630 CG15118-PE 10..505 84..539 495 27.1 Plus
CG15118-PB 637 CG15118-PB 10..505 84..539 495 27.1 Plus
CG15118-PA 637 CG15118-PA 10..505 84..539 495 27.1 Plus
CG15118-PD 592 CG15118-PD 2..460 125..539 447 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20952-PA 520 GI20952-PA 1..520 1..543 2090 76 Plus
Dmoj\GI20625-PA 640 GI20625-PA 9..461 83..513 525 28.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10514-PA 539 GL10514-PA 17..539 18..543 2175 78.3 Plus
Dper\GL11759-PA 581 GL11759-PA 10..443 84..533 433 25.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19099-PA 539 GA19099-PA 17..539 18..543 2189 78.3 Plus
Dpse\GA13506-PA 636 GA13506-PA 10..498 84..533 519 27.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19924-PA 543 GM19924-PA 1..543 1..543 2865 98.2 Plus
Dsec\GM19848-PA 637 GM19848-PA 10..505 84..539 499 27.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25413-PA 543 GD25413-PA 1..543 1..543 2878 98.5 Plus
Dsim\GD25337-PA 654 GD25337-PA 12..522 70..539 511 27.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20674-PA 514 GJ20674-PA 1..514 1..543 2117 75 Plus
Dvir\GJ19668-PA 641 GJ19668-PA 10..499 84..533 473 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21343-PA 550 GK21343-PA 1..550 1..543 2262 79.9 Plus
Dwil\GK17840-PA 641 GK17840-PA 10..499 84..533 497 26.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13932-PA 544 GE13932-PA 1..544 1..543 2844 97.6 Plus
Dyak\GE13859-PA 701 GE13859-PA 10..505 84..539 509 28.6 Plus

LD29875.hyp Sequence

Translation from 74 to 1705

> LD29875.hyp
MSKEKEDECDKHKQQATADAKSTSSEDSDEYQSAGEGEDGDGDGDGDSPA
ERPPDKTSPTVAVAPTAKAASPLPTVKPASEALDFPMHRSVFEDDIKSLQ
RRLLLSTAQDEVGRKDKHGNTPLHLAVMLGRKHAVRLLLAQNAPVKIKNN
EGWSPLSEAISYGDRQTITQVLRMLKLQSREHMESRREKLVNALRQMQDF
YMEFKWDFQSWLPLVSRILPSDICRLYKSGASIRLDTTLVDFNDMRWERG
DISFLFRGEAPARESLVLLDNEQECFQRLRYEESDMEDEVDVLMSTDILA
TQMSTKTIQFARAQRGWIFRANRKELIGGQYQCEIYTIQGLILKQRKRRE
HLSHEDLQKNRAIVETITKGASQQPDTRRSSLGSQHTATPPETNTPTAPN
GISLPELPRRSSLQAPPPPTVTWRQYLDAEVGKCPQLGRTPVHKQSNKTL
RATVAMSKDFPLSVDMLLDVLEVVAPLKHINKLREFVTLKLPTGFPVKIE
IPVLHTVTAKVTFQKFEFRDNIPAKMFEVPSHYWEDVRRFQDL*

LD29875.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5742-PC 585 CG5742-PC 1..543 1..543 2816 100 Plus
CG5742-PB 543 CG5742-PB 1..543 1..543 2816 100 Plus
CG5742-PA 543 CG5742-PA 1..543 1..543 2816 100 Plus
CG15118-PE 630 CG15118-PE 10..505 84..539 495 27.1 Plus
CG15118-PB 637 CG15118-PB 10..505 84..539 495 27.1 Plus