Clone LD29892 Report

Search the DGRC for LD29892

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:298
Well:92
Vector:pOT2
Associated Gene/TranscriptCG8378-RA
Protein status:LD29892.pep: gold
Preliminary Size:2469
Sequenced Size:2459

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8378 2000-02-14 Blastp of sequenced clone
CG8378 2001-01-01 Release 2 assignment
CG8378 2003-01-01 Sim4 clustering to Release 3
CG8378 2008-04-29 Release 5.5 accounting
CG8378 2008-08-15 Release 5.9 accounting
CG8378 2008-12-18 5.12 accounting

Clone Sequence Records

LD29892.complete Sequence

2459 bp (2459 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145692

> LD29892.complete
CTGCTTCCAGCGGAATCGTCAAAAAAATAACATTAAAATCGCCGTGTGCA
TAATTAGAATATTTCCGAATAGTAATCGCCCGTGAAATCGCTAATTAGCG
GTCAGCACTTGCGCCAGTTAAAGAAATCGCGGCACCGGCAGTGGGCCAAA
AGAACATTTTTTCCGGCTGAAAAAAACAGGCGGCGGCGTCGACACGCGGA
CCGAACCAAAGGATCCGAAGCCATCCGATCAGATCTAATCCGATCCGGAG
AAAATTCCAGGACACTAAGGACTTCCGAAACTACCCCGCACAAGAGATGG
ACGTGTACGACGTGAGCGATGATCTGATAAAGAAGCTGCAGGACTGGAAA
CTAATCGGCATCATATCCGGCAAGTTCAACGAGCTGAAGGAGAACCATCG
CAAGGTTGACTTCGTGATGCGCGCTCTTATTGACTTCAAGTACATTGAAA
AGATATTCCTGAATGTAACGCTTCGAGAGGACAAGTGCAACAAGCGGAGC
GTGGAGTTCCGTATGCTGGGCAACGAGCAGTTTTCGCTCAAGAACAGGAA
TTACTTCCAGGCTCTAGAGCTGTACAACAAAAGCATCTGTTATGCCGAAC
CGAATTCGGAGCACCTGTCCATCGGCTATGCTAATCGGTCGGCGGTACTA
TTCGAGTGGAAGCGCTATCGGCAATGCCTGGACAATATCAAGCTGGCAAG
GCAGGCCAACTATCCGGCGAGACTGAGCCACAAACTAGACAAGCGAGAAA
GGGACTGCCAACAGCTACTCGATCAGCAACCGCCGGATGTGGTGCCCTAT
GAGTTCAAGCTCAGTTTCGAACCGCATGCCCAGGTGCCCTTCATCGCCGA
CTGTTTGGAGTTGCGCGAAACCGCCGCCGAGGGTCGCTTTGTGGTGACCA
ATCGGGATTTGGCCGTTGGGGATCTTGTGTCCGTGGAGGAGCCCTTCTGC
TCCACACTGCTGACGCCGATGCGATACATTCGGTGTGCCACCTGCAAGCG
GGAGAACTATCTGACCCTCATACCCTGCGACAGCTGCTGTTCCACGATGT
TCTGCTCCGAGGAGTGCAAGTCGATTGCCATGCAAACCTATCACCGCTAC
GAGTGCCCCATCATTGACTTTCTGAACCGCATGTTCAACAAGATCCACTG
TATCGCACTGCGCACCACACTGGTCGCGCTGAATATCTTTCCCAGCATCG
AGGAGCTAATTGACTTCTGTGAGCAGGAGCAGAACCAGGACAAGTGCGCC
TTTGACCTCAACTACAACGAGCTGACGCCGGAGGAGCACTACCGGGCCAT
CCATGGACTGGTGACAAACCAGCACCTGCGCTCCGTCTCCGATCTCTTCC
AGCGCTCCGTGGTCTGTGCTGTGCTCAAGCACTTCATAATCGAATACACA
CCCGTCAAGGAATATTTGGGCGGCGAAGAAGGCGTGAACTTCTTCACGGA
CCTCCTGTTCCGACATCTGCAGACATCTCCCTCGAATATGCACGGCATCG
ACCTGGTCGAGCAGGTTAACGAGACCAAGGACGACCAGACGCACTCGTCT
GGGGCGTACGCCTTCCTCTCGCTCATAAATCACTCTTGTGCGCCGAATAC
TGTAAGGATATACGAGGGCACCAAGGCGTACATGTTCGTCCTGCGGCCTA
TTAAGGCGGGAAATGTGCTCTACGACAATTACGGTGCTCACTTCGCCATC
TGCAGCAAGGAGCAGCGTTTGAAAAGGCTGTCCCTGCAGTACCGCTTCGA
CTGCAAATGCGAGGGCTGCGAGCTGAACTATCCTATGTTCGGAATGATGC
CGCACAAGGCGACGGTGCCATCGGTTACCGATGACACGGAATTGGCACTG
AGCTCCTACAACTATGATTTCGCGGTGAGCAACTATCGAAAGTACTGCGA
CTTCCTCACGCAATACGGTGACGACTATCCGTGCGAGCAGATTAGCTCCG
CGGAGGAGTGCCTAAAGATGGCCCTGCATATCATGGCGGACGCAGTGCCG
CTCAAGGCGAAGATGTAATCGGATCCTGCCGCTGAACCAACCCACACAAC
CAACACGGACGAACTTTTCCTTTGCTAACTTTAACTGGAGACAGCGTATT
ACAAGCGAGACACAAATCAAGGAGAGTAATTGATTATACATACATGTTGT
TGCCATAAGTCTGTAGCGCAGGCAGCAGCGCGATGGGGAGGGAGCATGCC
CTTAACTTTTATATTTGTAATTGTACATTTTCGACCTTTGATTATGTTTT
ACCCCGCACCAAGCCCGCACACCACACCCACACAACGCCCAGCACACCCA
CACAACGCCCAGCACACCCACACAACGCCCAGCACACCCACCACACATTT
CACAACAATTCGAAAGTTCAAAATTCTAAAGTTTATTTATTTTTTGATCA
CAACAATGTCTTCGATGAAAACAAACAAACAAAGGATTATTATGCAACCT
AAAAAAAAA

LD29892.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8378-RA 2739 CG8378-RA 231..2681 1..2451 12255 100 Plus
CG8378.b 2533 CG8378.b 83..2533 1..2451 12255 100 Plus
CG8378.a 2467 CG8378.a 83..1956 1..1874 9370 100 Plus
CG8378.a 2467 CG8378.a 1956..2467 1940..2451 2560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8028471..8029597 558..1684 5635 100 Plus
chr2R 21145070 chr2R 8029709..8030475 1684..2450 3820 99.9 Plus
chr2R 21145070 chr2R 8027858..8028418 1..561 2805 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12141268..12142394 558..1684 5635 100 Plus
2R 25286936 2R 12142506..12143273 1684..2451 3840 100 Plus
2R 25286936 2R 12140655..12141215 1..561 2805 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12142467..12143593 558..1684 5635 100 Plus
2R 25260384 2R 12143705..12144472 1684..2451 3840 100 Plus
2R 25260384 2R 12141854..12142414 1..561 2805 100 Plus
Blast to na_te.dros performed 2019-03-15 18:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 4652..4801 2273..2416 168 60 Plus

LD29892.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:29:26 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8027858..8028417 1..560 100 -> Plus
chr2R 8028474..8029597 561..1684 100 -> Plus
chr2R 8029710..8030292 1685..2267 100 == Plus
chr2R 8030372..8030475 2347..2450 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:32 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 1..1722 297..2018 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:35:21 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 1..1722 297..2018 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:05:13 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 1..1722 297..2018 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:11:11 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 1..1722 297..2018 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:26 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 1..1722 297..2018 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:38:10 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 51..2500 1..2450 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:35:21 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 51..2500 1..2450 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:05:13 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 25..2474 1..2450 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:11:11 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 51..2500 1..2450 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:26 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 25..2474 1..2450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:26 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12140655..12141214 1..560 100 -> Plus
2R 12141271..12142394 561..1684 100 -> Plus
2R 12142507..12143272 1685..2450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:26 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12140655..12141214 1..560 100 -> Plus
2R 12141271..12142394 561..1684 100 -> Plus
2R 12142507..12143272 1685..2450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:26 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12140655..12141214 1..560 100 -> Plus
2R 12141271..12142394 561..1684 100 -> Plus
2R 12142507..12143272 1685..2450 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:05:13 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8028160..8028719 1..560 100 -> Plus
arm_2R 8028776..8029899 561..1684 100 -> Plus
arm_2R 8030012..8030777 1685..2450 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:47:37 Download gff for LD29892.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12141854..12142413 1..560 100 -> Plus
2R 12142470..12143593 561..1684 100 -> Plus
2R 12143706..12144471 1685..2450 100   Plus

LD29892.hyp Sequence

Translation from 296 to 2017

> LD29892.hyp
MDVYDVSDDLIKKLQDWKLIGIISGKFNELKENHRKVDFVMRALIDFKYI
EKIFLNVTLREDKCNKRSVEFRMLGNEQFSLKNRNYFQALELYNKSICYA
EPNSEHLSIGYANRSAVLFEWKRYRQCLDNIKLARQANYPARLSHKLDKR
ERDCQQLLDQQPPDVVPYEFKLSFEPHAQVPFIADCLELRETAAEGRFVV
TNRDLAVGDLVSVEEPFCSTLLTPMRYIRCATCKRENYLTLIPCDSCCST
MFCSEECKSIAMQTYHRYECPIIDFLNRMFNKIHCIALRTTLVALNIFPS
IEELIDFCEQEQNQDKCAFDLNYNELTPEEHYRAIHGLVTNQHLRSVSDL
FQRSVVCAVLKHFIIEYTPVKEYLGGEEGVNFFTDLLFRHLQTSPSNMHG
IDLVEQVNETKDDQTHSSGAYAFLSLINHSCAPNTVRIYEGTKAYMFVLR
PIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPMFGM
MPHKATVPSVTDDTELALSSYNYDFAVSNYRKYCDFLTQYGDDYPCEQIS
SAEECLKMALHIMADAVPLKAKM*

LD29892.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8378-PA 573 CG8378-PA 1..573 1..573 3061 100 Plus
CG7759-PA 660 CG7759-PA 84..548 80..502 396 25.3 Plus
Smyd4-PA 663 CG14122-PA 240..547 171..497 258 26.8 Plus
CG1868-PC 751 CG1868-PC 62..554 64..496 227 22.9 Plus
CG1868-PB 751 CG1868-PB 62..554 64..496 227 22.9 Plus

LD29892.pep Sequence

Translation from 296 to 2017

> LD29892.pep
MDVYDVSDDLIKKLQDWKLIGIISGKFNELKENHRKVDFVMRALIDFKYI
EKIFLNVTLREDKCNKRSVEFRMLGNEQFSLKNRNYFQALELYNKSICYA
EPNSEHLSIGYANRSAVLFEWKRYRQCLDNIKLARQANYPARLSHKLDKR
ERDCQQLLDQQPPDVVPYEFKLSFEPHAQVPFIADCLELRETAAEGRFVV
TNRDLAVGDLVSVEEPFCSTLLTPMRYIRCATCKRENYLTLIPCDSCCST
MFCSEECKSIAMQTYHRYECPIIDFLNRMFNKIHCIALRTTLVALNIFPS
IEELIDFCEQEQNQDKCAFDLNYNELTPEEHYRAIHGLVTNQHLRSVSDL
FQRSVVCAVLKHFIIEYTPVKEYLGGEEGVNFFTDLLFRHLQTSPSNMHG
IDLVEQVNETKDDQTHSSGAYAFLSLINHSCAPNTVRIYEGTKAYMFVLR
PIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPMFGM
MPHKATVPSVTDDTELALSSYNYDFAVSNYRKYCDFLTQYGDDYPCEQIS
SAEECLKMALHIMADAVPLKAKM*

LD29892.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12292-PA 574 GF12292-PA 1..574 1..573 2681 85 Plus
Dana\GF12554-PA 660 GF12554-PA 84..549 80..503 384 24.7 Plus
Dana\GF24983-PA 663 GF24983-PA 224..551 155..498 281 26.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20247-PA 573 GG20247-PA 1..573 1..573 2840 90.2 Plus
Dere\GG20202-PA 660 GG20202-PA 236..549 182..503 349 29.3 Plus
Dere\GG13835-PA 665 GG13835-PA 143..550 107..498 255 26.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20862-PA 574 GH20862-PA 1..574 1..573 2526 80 Plus
Dgri\GH21386-PA 664 GH21386-PA 84..552 80..502 403 26.4 Plus
Dgri\GH16068-PA 662 GH16068-PA 245..550 177..498 281 28.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
Smyd4-4-PA 573 CG8378-PA 1..573 1..573 3061 100 Plus
Smyd4-3-PA 660 CG7759-PA 84..548 80..502 396 25.3 Plus
Smyd4-2-PA 663 CG14122-PA 240..547 171..497 258 26.8 Plus
Smyd4-1-PC 751 CG1868-PC 62..554 64..496 227 22.9 Plus
Smyd4-1-PB 751 CG1868-PB 62..554 64..496 227 22.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20970-PA 574 GI20970-PA 1..574 1..573 2538 80.3 Plus
Dmoj\GI18563-PA 666 GI18563-PA 242..554 182..502 342 28.7 Plus
Dmoj\GI12333-PA 661 GI12333-PA 237..549 164..498 276 26.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16991-PA 574 GL16991-PA 1..574 1..573 2708 86.1 Plus
Dper\GL11690-PA 660 GL11690-PA 232..549 178..503 355 28.8 Plus
Dper\GL24960-PA 661 GL24960-PA 222..549 155..498 272 25.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21031-PA 574 GA21031-PA 1..574 1..573 2708 86.1 Plus
Dpse\GA20567-PA 660 GA20567-PA 232..549 178..503 354 28.8 Plus
Dpse\GA20567-PB 567 GA20567-PB 139..456 178..503 352 28.8 Plus
Dpse\GA12774-PA 661 GA12774-PA 222..549 155..498 272 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21333-PA 573 GM21333-PA 1..573 1..573 2982 95.8 Plus
Dsec\GM21288-PA 660 GM21288-PA 236..549 182..503 346 29.3 Plus
Dsec\GM24661-PA 660 GM24661-PA 240..548 171..498 256 27.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10841-PA 694 GD10841-PA 1..476 1..476 2478 95.8 Plus
Dsim\GD10841-PA 694 GD10841-PA 479..694 358..573 1125 94.9 Plus
Dsim\GD10796-PA 646 GD10796-PA 236..549 182..503 344 29 Plus
Dsim\GD12724-PA 663 GD12724-PA 240..548 171..498 245 26.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20689-PA 574 GJ20689-PA 1..574 1..573 2541 80.5 Plus
Dvir\GJ20356-PA 662 GJ20356-PA 84..550 80..502 399 25.5 Plus
Dvir\GJ12224-PA 661 GJ12224-PA 244..549 177..498 280 28.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19653-PA 574 GK19653-PA 1..574 1..573 2555 82.9 Plus
Dwil\GK21416-PA 661 GK21416-PA 84..549 80..502 395 26.2 Plus
Dwil\GK20590-PA 661 GK20590-PA 241..549 171..498 282 27.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12406-PA 573 GE12406-PA 1..573 1..573 2856 90.8 Plus
Dyak\GE12361-PA 660 GE12361-PA 236..549 182..503 356 29.6 Plus
Dyak\GE20125-PA 667 GE20125-PA 145..552 107..498 248 24.1 Plus