BDGP Sequence Production Resources |
Search the DGRC for LD29892
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 298 |
Well: | 92 |
Vector: | pOT2 |
Associated Gene/Transcript | CG8378-RA |
Protein status: | LD29892.pep: gold |
Preliminary Size: | 2469 |
Sequenced Size: | 2459 |
Gene | Date | Evidence |
---|---|---|
CG8378 | 2000-02-14 | Blastp of sequenced clone |
CG8378 | 2001-01-01 | Release 2 assignment |
CG8378 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8378 | 2008-04-29 | Release 5.5 accounting |
CG8378 | 2008-08-15 | Release 5.9 accounting |
CG8378 | 2008-12-18 | 5.12 accounting |
2459 bp (2459 high quality bases) assembled on 2000-02-14
GenBank Submission: AF145692
> LD29892.complete CTGCTTCCAGCGGAATCGTCAAAAAAATAACATTAAAATCGCCGTGTGCA TAATTAGAATATTTCCGAATAGTAATCGCCCGTGAAATCGCTAATTAGCG GTCAGCACTTGCGCCAGTTAAAGAAATCGCGGCACCGGCAGTGGGCCAAA AGAACATTTTTTCCGGCTGAAAAAAACAGGCGGCGGCGTCGACACGCGGA CCGAACCAAAGGATCCGAAGCCATCCGATCAGATCTAATCCGATCCGGAG AAAATTCCAGGACACTAAGGACTTCCGAAACTACCCCGCACAAGAGATGG ACGTGTACGACGTGAGCGATGATCTGATAAAGAAGCTGCAGGACTGGAAA CTAATCGGCATCATATCCGGCAAGTTCAACGAGCTGAAGGAGAACCATCG CAAGGTTGACTTCGTGATGCGCGCTCTTATTGACTTCAAGTACATTGAAA AGATATTCCTGAATGTAACGCTTCGAGAGGACAAGTGCAACAAGCGGAGC GTGGAGTTCCGTATGCTGGGCAACGAGCAGTTTTCGCTCAAGAACAGGAA TTACTTCCAGGCTCTAGAGCTGTACAACAAAAGCATCTGTTATGCCGAAC CGAATTCGGAGCACCTGTCCATCGGCTATGCTAATCGGTCGGCGGTACTA TTCGAGTGGAAGCGCTATCGGCAATGCCTGGACAATATCAAGCTGGCAAG GCAGGCCAACTATCCGGCGAGACTGAGCCACAAACTAGACAAGCGAGAAA GGGACTGCCAACAGCTACTCGATCAGCAACCGCCGGATGTGGTGCCCTAT GAGTTCAAGCTCAGTTTCGAACCGCATGCCCAGGTGCCCTTCATCGCCGA CTGTTTGGAGTTGCGCGAAACCGCCGCCGAGGGTCGCTTTGTGGTGACCA ATCGGGATTTGGCCGTTGGGGATCTTGTGTCCGTGGAGGAGCCCTTCTGC TCCACACTGCTGACGCCGATGCGATACATTCGGTGTGCCACCTGCAAGCG GGAGAACTATCTGACCCTCATACCCTGCGACAGCTGCTGTTCCACGATGT TCTGCTCCGAGGAGTGCAAGTCGATTGCCATGCAAACCTATCACCGCTAC GAGTGCCCCATCATTGACTTTCTGAACCGCATGTTCAACAAGATCCACTG TATCGCACTGCGCACCACACTGGTCGCGCTGAATATCTTTCCCAGCATCG AGGAGCTAATTGACTTCTGTGAGCAGGAGCAGAACCAGGACAAGTGCGCC TTTGACCTCAACTACAACGAGCTGACGCCGGAGGAGCACTACCGGGCCAT CCATGGACTGGTGACAAACCAGCACCTGCGCTCCGTCTCCGATCTCTTCC AGCGCTCCGTGGTCTGTGCTGTGCTCAAGCACTTCATAATCGAATACACA CCCGTCAAGGAATATTTGGGCGGCGAAGAAGGCGTGAACTTCTTCACGGA CCTCCTGTTCCGACATCTGCAGACATCTCCCTCGAATATGCACGGCATCG ACCTGGTCGAGCAGGTTAACGAGACCAAGGACGACCAGACGCACTCGTCT GGGGCGTACGCCTTCCTCTCGCTCATAAATCACTCTTGTGCGCCGAATAC TGTAAGGATATACGAGGGCACCAAGGCGTACATGTTCGTCCTGCGGCCTA TTAAGGCGGGAAATGTGCTCTACGACAATTACGGTGCTCACTTCGCCATC TGCAGCAAGGAGCAGCGTTTGAAAAGGCTGTCCCTGCAGTACCGCTTCGA CTGCAAATGCGAGGGCTGCGAGCTGAACTATCCTATGTTCGGAATGATGC CGCACAAGGCGACGGTGCCATCGGTTACCGATGACACGGAATTGGCACTG AGCTCCTACAACTATGATTTCGCGGTGAGCAACTATCGAAAGTACTGCGA CTTCCTCACGCAATACGGTGACGACTATCCGTGCGAGCAGATTAGCTCCG CGGAGGAGTGCCTAAAGATGGCCCTGCATATCATGGCGGACGCAGTGCCG CTCAAGGCGAAGATGTAATCGGATCCTGCCGCTGAACCAACCCACACAAC CAACACGGACGAACTTTTCCTTTGCTAACTTTAACTGGAGACAGCGTATT ACAAGCGAGACACAAATCAAGGAGAGTAATTGATTATACATACATGTTGT TGCCATAAGTCTGTAGCGCAGGCAGCAGCGCGATGGGGAGGGAGCATGCC CTTAACTTTTATATTTGTAATTGTACATTTTCGACCTTTGATTATGTTTT ACCCCGCACCAAGCCCGCACACCACACCCACACAACGCCCAGCACACCCA CACAACGCCCAGCACACCCACACAACGCCCAGCACACCCACCACACATTT CACAACAATTCGAAAGTTCAAAATTCTAAAGTTTATTTATTTTTTGATCA CAACAATGTCTTCGATGAAAACAAACAAACAAAGGATTATTATGCAACCT AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8378-RA | 2739 | CG8378-RA | 231..2681 | 1..2451 | 12255 | 100 | Plus |
CG8378.b | 2533 | CG8378.b | 83..2533 | 1..2451 | 12255 | 100 | Plus |
CG8378.a | 2467 | CG8378.a | 83..1956 | 1..1874 | 9370 | 100 | Plus |
CG8378.a | 2467 | CG8378.a | 1956..2467 | 1940..2451 | 2560 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 8028471..8029597 | 558..1684 | 5635 | 100 | Plus |
chr2R | 21145070 | chr2R | 8029709..8030475 | 1684..2450 | 3820 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 8027858..8028418 | 1..561 | 2805 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12141268..12142394 | 558..1684 | 5635 | 100 | Plus |
2R | 25286936 | 2R | 12142506..12143273 | 1684..2451 | 3840 | 100 | Plus |
2R | 25286936 | 2R | 12140655..12141215 | 1..561 | 2805 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12142467..12143593 | 558..1684 | 5635 | 100 | Plus |
2R | 25260384 | 2R | 12143705..12144472 | 1684..2451 | 3840 | 100 | Plus |
2R | 25260384 | 2R | 12141854..12142414 | 1..561 | 2805 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 4652..4801 | 2273..2416 | 168 | 60 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 8027858..8028417 | 1..560 | 100 | -> | Plus |
chr2R | 8028474..8029597 | 561..1684 | 100 | -> | Plus |
chr2R | 8029710..8030292 | 1685..2267 | 100 | == | Plus |
chr2R | 8030372..8030475 | 2347..2450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8378-RA | 1..1722 | 297..2018 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8378-RA | 1..1722 | 297..2018 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8378-RA | 1..1722 | 297..2018 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8378-RA | 1..1722 | 297..2018 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8378-RA | 1..1722 | 297..2018 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8378-RA | 51..2500 | 1..2450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8378-RA | 51..2500 | 1..2450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8378-RA | 25..2474 | 1..2450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8378-RA | 51..2500 | 1..2450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8378-RA | 25..2474 | 1..2450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12140655..12141214 | 1..560 | 100 | -> | Plus |
2R | 12141271..12142394 | 561..1684 | 100 | -> | Plus |
2R | 12142507..12143272 | 1685..2450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12140655..12141214 | 1..560 | 100 | -> | Plus |
2R | 12141271..12142394 | 561..1684 | 100 | -> | Plus |
2R | 12142507..12143272 | 1685..2450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12140655..12141214 | 1..560 | 100 | -> | Plus |
2R | 12141271..12142394 | 561..1684 | 100 | -> | Plus |
2R | 12142507..12143272 | 1685..2450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 8028160..8028719 | 1..560 | 100 | -> | Plus |
arm_2R | 8028776..8029899 | 561..1684 | 100 | -> | Plus |
arm_2R | 8030012..8030777 | 1685..2450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12141854..12142413 | 1..560 | 100 | -> | Plus |
2R | 12142470..12143593 | 561..1684 | 100 | -> | Plus |
2R | 12143706..12144471 | 1685..2450 | 100 | Plus |
Translation from 296 to 2017
> LD29892.hyp MDVYDVSDDLIKKLQDWKLIGIISGKFNELKENHRKVDFVMRALIDFKYI EKIFLNVTLREDKCNKRSVEFRMLGNEQFSLKNRNYFQALELYNKSICYA EPNSEHLSIGYANRSAVLFEWKRYRQCLDNIKLARQANYPARLSHKLDKR ERDCQQLLDQQPPDVVPYEFKLSFEPHAQVPFIADCLELRETAAEGRFVV TNRDLAVGDLVSVEEPFCSTLLTPMRYIRCATCKRENYLTLIPCDSCCST MFCSEECKSIAMQTYHRYECPIIDFLNRMFNKIHCIALRTTLVALNIFPS IEELIDFCEQEQNQDKCAFDLNYNELTPEEHYRAIHGLVTNQHLRSVSDL FQRSVVCAVLKHFIIEYTPVKEYLGGEEGVNFFTDLLFRHLQTSPSNMHG IDLVEQVNETKDDQTHSSGAYAFLSLINHSCAPNTVRIYEGTKAYMFVLR PIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPMFGM MPHKATVPSVTDDTELALSSYNYDFAVSNYRKYCDFLTQYGDDYPCEQIS SAEECLKMALHIMADAVPLKAKM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8378-PA | 573 | CG8378-PA | 1..573 | 1..573 | 3061 | 100 | Plus |
CG7759-PA | 660 | CG7759-PA | 84..548 | 80..502 | 396 | 25.3 | Plus |
Smyd4-PA | 663 | CG14122-PA | 240..547 | 171..497 | 258 | 26.8 | Plus |
CG1868-PC | 751 | CG1868-PC | 62..554 | 64..496 | 227 | 22.9 | Plus |
CG1868-PB | 751 | CG1868-PB | 62..554 | 64..496 | 227 | 22.9 | Plus |
Translation from 296 to 2017
> LD29892.pep MDVYDVSDDLIKKLQDWKLIGIISGKFNELKENHRKVDFVMRALIDFKYI EKIFLNVTLREDKCNKRSVEFRMLGNEQFSLKNRNYFQALELYNKSICYA EPNSEHLSIGYANRSAVLFEWKRYRQCLDNIKLARQANYPARLSHKLDKR ERDCQQLLDQQPPDVVPYEFKLSFEPHAQVPFIADCLELRETAAEGRFVV TNRDLAVGDLVSVEEPFCSTLLTPMRYIRCATCKRENYLTLIPCDSCCST MFCSEECKSIAMQTYHRYECPIIDFLNRMFNKIHCIALRTTLVALNIFPS IEELIDFCEQEQNQDKCAFDLNYNELTPEEHYRAIHGLVTNQHLRSVSDL FQRSVVCAVLKHFIIEYTPVKEYLGGEEGVNFFTDLLFRHLQTSPSNMHG IDLVEQVNETKDDQTHSSGAYAFLSLINHSCAPNTVRIYEGTKAYMFVLR PIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPMFGM MPHKATVPSVTDDTELALSSYNYDFAVSNYRKYCDFLTQYGDDYPCEQIS SAEECLKMALHIMADAVPLKAKM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12292-PA | 574 | GF12292-PA | 1..574 | 1..573 | 2681 | 85 | Plus |
Dana\GF12554-PA | 660 | GF12554-PA | 84..549 | 80..503 | 384 | 24.7 | Plus |
Dana\GF24983-PA | 663 | GF24983-PA | 224..551 | 155..498 | 281 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20247-PA | 573 | GG20247-PA | 1..573 | 1..573 | 2840 | 90.2 | Plus |
Dere\GG20202-PA | 660 | GG20202-PA | 236..549 | 182..503 | 349 | 29.3 | Plus |
Dere\GG13835-PA | 665 | GG13835-PA | 143..550 | 107..498 | 255 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20862-PA | 574 | GH20862-PA | 1..574 | 1..573 | 2526 | 80 | Plus |
Dgri\GH21386-PA | 664 | GH21386-PA | 84..552 | 80..502 | 403 | 26.4 | Plus |
Dgri\GH16068-PA | 662 | GH16068-PA | 245..550 | 177..498 | 281 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Smyd4-4-PA | 573 | CG8378-PA | 1..573 | 1..573 | 3061 | 100 | Plus |
Smyd4-3-PA | 660 | CG7759-PA | 84..548 | 80..502 | 396 | 25.3 | Plus |
Smyd4-2-PA | 663 | CG14122-PA | 240..547 | 171..497 | 258 | 26.8 | Plus |
Smyd4-1-PC | 751 | CG1868-PC | 62..554 | 64..496 | 227 | 22.9 | Plus |
Smyd4-1-PB | 751 | CG1868-PB | 62..554 | 64..496 | 227 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20970-PA | 574 | GI20970-PA | 1..574 | 1..573 | 2538 | 80.3 | Plus |
Dmoj\GI18563-PA | 666 | GI18563-PA | 242..554 | 182..502 | 342 | 28.7 | Plus |
Dmoj\GI12333-PA | 661 | GI12333-PA | 237..549 | 164..498 | 276 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16991-PA | 574 | GL16991-PA | 1..574 | 1..573 | 2708 | 86.1 | Plus |
Dper\GL11690-PA | 660 | GL11690-PA | 232..549 | 178..503 | 355 | 28.8 | Plus |
Dper\GL24960-PA | 661 | GL24960-PA | 222..549 | 155..498 | 272 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21031-PA | 574 | GA21031-PA | 1..574 | 1..573 | 2708 | 86.1 | Plus |
Dpse\GA20567-PA | 660 | GA20567-PA | 232..549 | 178..503 | 354 | 28.8 | Plus |
Dpse\GA20567-PB | 567 | GA20567-PB | 139..456 | 178..503 | 352 | 28.8 | Plus |
Dpse\GA12774-PA | 661 | GA12774-PA | 222..549 | 155..498 | 272 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21333-PA | 573 | GM21333-PA | 1..573 | 1..573 | 2982 | 95.8 | Plus |
Dsec\GM21288-PA | 660 | GM21288-PA | 236..549 | 182..503 | 346 | 29.3 | Plus |
Dsec\GM24661-PA | 660 | GM24661-PA | 240..548 | 171..498 | 256 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10841-PA | 694 | GD10841-PA | 1..476 | 1..476 | 2478 | 95.8 | Plus |
Dsim\GD10841-PA | 694 | GD10841-PA | 479..694 | 358..573 | 1125 | 94.9 | Plus |
Dsim\GD10796-PA | 646 | GD10796-PA | 236..549 | 182..503 | 344 | 29 | Plus |
Dsim\GD12724-PA | 663 | GD12724-PA | 240..548 | 171..498 | 245 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20689-PA | 574 | GJ20689-PA | 1..574 | 1..573 | 2541 | 80.5 | Plus |
Dvir\GJ20356-PA | 662 | GJ20356-PA | 84..550 | 80..502 | 399 | 25.5 | Plus |
Dvir\GJ12224-PA | 661 | GJ12224-PA | 244..549 | 177..498 | 280 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19653-PA | 574 | GK19653-PA | 1..574 | 1..573 | 2555 | 82.9 | Plus |
Dwil\GK21416-PA | 661 | GK21416-PA | 84..549 | 80..502 | 395 | 26.2 | Plus |
Dwil\GK20590-PA | 661 | GK20590-PA | 241..549 | 171..498 | 282 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12406-PA | 573 | GE12406-PA | 1..573 | 1..573 | 2856 | 90.8 | Plus |
Dyak\GE12361-PA | 660 | GE12361-PA | 236..549 | 182..503 | 356 | 29.6 | Plus |
Dyak\GE20125-PA | 667 | GE20125-PA | 145..552 | 107..498 | 248 | 24.1 | Plus |