Clone LD29918 Report

Search the DGRC for LD29918

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:299
Well:18
Vector:pOT2
Associated Gene/TranscriptCG3021-RA
Protein status:LD29918.pep: gold
Preliminary Size:1539
Sequenced Size:1363

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3021 2001-01-01 Release 2 assignment
CG3021 2001-07-04 Blastp of sequenced clone
CG3021 2003-01-01 Sim4 clustering to Release 3
CG3021 2008-04-29 Release 5.5 accounting
CG3021 2008-08-15 Release 5.9 accounting
CG3021 2008-12-18 5.12 accounting

Clone Sequence Records

LD29918.complete Sequence

1363 bp (1363 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051773

> LD29918.complete
ATAACTTTGAAATTATTGCTTTGCCAACACCGCCCAATGATTCGCAACGT
AGTGGTGGGCGTGTCGGGCGGCGTGGACAGCGCCGTTTCCGCCCACCTGC
TGGCGGAGCAAGGATTCAAGGTGCTGGGTGTGTTTATGCGCAACTGGGAT
GAGGCGGACGAAGTGGGTCGCTGCAGTGGGGAGGCGGATCTGAAGGACGC
CGAGTGGGCGTGCCGGCAGCTCGGCGTGGAGCTGCGTCAGGTGAACTATG
TGCGCGAGTACTGGACGGCGGTGTTCAGCCAGTTTCTGGACGATTACCAA
ATGGGCTTGACACCAAATCCGGACATCCTGTGCAATCGCCACATTAAGTT
TGACCTCTTTCACAAGCACGCCTTGGAAAATCTCGGCTACGATGCCGTGG
CCACGGGTCACTACGCCCGGAATAGTCTGGGCAACTACCTGGAGGGGATT
GCCTCCAACAACGACGCCCGCTTGCTAATACCCGCCGATACGTTCAAGGA
CCAGACATTCTTTTTGGCAGGTATTTCCCGAAAGGCTCTGCAACGCACGA
TGTTCCCTTTGGGAGACTTCCAGAAGAGCCAGGTCAAGGACTTGGCCAAG
AAGATTGGCTTCCAGCGACTGGCCAAAAAGAAGGAAAGCACTGGCATTTG
TTTCGTTGGCAAACGCAACTTCAAGGACTTCATACAGGAGTACATCACTT
CCAAACGTGGTCCCTTCCTAGACATCGACAGTGGAGCCGTTGTCGGCCAC
CACGAGGGCATCCATCAATGGACTGTGGGCCAGCGGTGCCGTCTGAGCTC
ATTCCTTCAGCCCTATTTTGTGGCCAGGAAAGAGGCCGCAAGCAATACCA
TCTATGTGGCATCTGGCCACAACCATCCCGCCCTTCTCAGCACCCACATA
GCCGTCGATCCGCCCAACTGGCTGTGTTCCAAGTCCCAACAGATTCTTTC
GGACACTGGCAGCTTGAGGTGTCGCTTTCGATTCCAGCACACCAAACCAT
TGGTGGACTGTCAGCTGAGCATCTCTCCCAGTAACACTTTTCTTGTCGAG
TTGGACGCTCCTTTAAGAGCTATTACACCAGGACAATATGCCGTATTCTA
TGACGACACAGCTTGTTTGGGTTCGGCCCGCATCCTCAGCGCTAATCCCC
TAAAGAAAAAAAACGCACAGACGCAGCAAGCTCAAGCCGCAAATCTGGTT
AGCTAATGATGTTTCCTCTGAGCCAGAAAATAAACCAAATGTAAGAAGGC
AGTCCAACTGCCAACACGGCATGTATAGATAGCATGGTAAATACGTTTTC
ATAAATTTAAGCGCCGAGTAAATTTTAGACGTGAATCGACACTTTTAAAA
AAAAAAAAAAAAA

LD29918.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3021-RA 1445 CG3021-RA 98..1445 1..1348 6740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 920841..921530 1..690 3435 99.9 Plus
chrX 22417052 chrX 921617..922274 689..1346 3290 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1026857..1027546 1..690 3450 100 Plus
X 23542271 X 1027633..1028292 689..1348 3300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1034955..1035644 1..690 3450 100 Plus
X 23527363 X 1035731..1036390 689..1348 3300 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:28:17 has no hits.

LD29918.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:29:29 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 920841..921530 1..690 99 -> Plus
chrX 921619..922274 691..1346 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:37 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 1..1170 37..1206 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:14 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 1..1170 37..1206 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:05:22 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 1..1170 37..1206 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:51:49 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 1..1170 37..1206 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:35 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 1..1170 37..1206 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:16:30 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 1..1346 1..1346 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:14 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 24..1369 1..1346 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:05:22 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 67..1412 1..1346 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:51:49 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 1..1346 1..1346 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:35 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 67..1412 1..1346 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:29 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
X 1026857..1027546 1..690 100 -> Plus
X 1027635..1028290 691..1346 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:29 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
X 1026857..1027546 1..690 100 -> Plus
X 1027635..1028290 691..1346 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:29 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
X 1026857..1027546 1..690 100 -> Plus
X 1027635..1028290 691..1346 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:05:22 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 920890..921579 1..690 100 -> Plus
arm_X 921668..922323 691..1346 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:19 Download gff for LD29918.complete
Subject Subject Range Query Range Percent Splice Strand
X 1034955..1035644 1..690 100 -> Plus
X 1035733..1036388 691..1346 100   Plus

LD29918.hyp Sequence

Translation from 0 to 1205

> LD29918.hyp
ITLKLLLCQHRPMIRNVVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWD
EADEVGRCSGEADLKDAEWACRQLGVELRQVNYVREYWTAVFSQFLDDYQ
MGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNSLGNYLEGI
ASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLAK
KIGFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGH
HEGIHQWTVGQRCRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTHI
AVDPPNWLCSKSQQILSDTGSLRCRFRFQHTKPLVDCQLSISPSNTFLVE
LDAPLRAITPGQYAVFYDDTACLGSARILSANPLKKKNAQTQQAQAANLV
S*

LD29918.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3021-PA 389 CG3021-PA 1..389 13..401 2043 100 Plus

LD29918.pep Sequence

Translation from 36 to 1205

> LD29918.pep
MIRNVVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWDEADEVGRCSGEA
DLKDAEWACRQLGVELRQVNYVREYWTAVFSQFLDDYQMGLTPNPDILCN
RHIKFDLFHKHALENLGYDAVATGHYARNSLGNYLEGIASNNDARLLIPA
DTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLAKKIGFQRLAKKKE
STGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGHHEGIHQWTVGQR
CRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKS
QQILSDTGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQ
YAVFYDDTACLGSARILSANPLKKKNAQTQQAQAANLVS*

LD29918.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22123-PA 388 GF22123-PA 1..374 1..373 1641 81.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12823-PA 411 GG12823-PA 1..388 1..389 1887 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11989-PA 381 GH11989-PA 1..376 1..378 1531 74.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3021-PA 389 CG3021-PA 1..389 1..389 2043 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15611-PA 380 GI15611-PA 1..370 1..373 1576 76.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14198-PA 387 GL14198-PA 1..386 1..386 1638 77.2 Plus
Dper\GL14219-PA 126 GL14219-PA 16..113 175..265 195 44.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22395-PA 387 GA22395-PA 1..386 1..386 1635 77.2 Plus
Dpse\GA22702-PA 129 GA22702-PA 28..116 196..265 249 57.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19108-PA 389 GM19108-PA 1..389 1..389 2043 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16539-PA 389 GD16539-PA 1..389 1..389 2050 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15215-PA 363 GJ15215-PA 1..353 1..373 1311 70.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16353-PA 380 GK16353-PA 1..380 1..385 1480 69.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16655-PA 388 GE16655-PA 1..388 1..389 1845 92.5 Plus