Clone LD29964 Report

Search the DGRC for LD29964

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:299
Well:64
Vector:pOT2
Associated Gene/TranscriptCortactin-RA
Protein status:LD29964.pep: gold
Preliminary Size:2615
Sequenced Size:2383

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3637 2001-01-01 Release 2 assignment
CG3637 2001-07-04 Blastp of sequenced clone
CG3637 2003-01-01 Sim4 clustering to Release 3
Cortactin 2008-04-29 Release 5.5 accounting
Cortactin 2008-08-15 Release 5.9 accounting
Cortactin 2008-12-18 5.12 accounting

Clone Sequence Records

LD29964.complete Sequence

2383 bp (2383 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051774

> LD29964.complete
AATTGTTTAACCCTTCTCCTCCCAGAAATTTGCAGACATCCCTAGCGGCA
TCAGATCATAAGTTCCTCTTGCAGTAGGAGTTAGTCATCGGGATATAAGG
ATAAGCGAGTAACCAGCGACCAGAAACCGGTAAAAAGAATGTGGAAGGCA
AGTGCCGGTCACCAGATTCAGGCCACCAGTGCAGCCTCCGCGGAGGACGA
CGACTGGGAGACGGATCCGGACTTCGTGAACGATGTCAGTGAGCAGGAGC
AGCGCTGGGGATCAAAGACGATCGACGGCAGCGGTCGCACAGCAGGCACC
ATCGACATGGACAAGCTGCGCGAGGAGACGGAGCAGGCCGATCTGGACAA
GAAGAAGCAGCTGCTGAAGGATCAGAACGCAGGATACGGATACGGGGGCA
AGTTTGGCGTTGAGAAGGACCGCATGGACAAGTCGGCTGTGGGTCATGAC
TACCAGGGCAAGGTGGGAAAGCACGCCTCGCAGAAGGACTACAGCGATGG
TTTTGGGGGAAAGTTCGGAGTGCAAGAGGATCGCAAGGACAAGTCTGCCG
TGGGCTGGGACCACGTCGAAAAGGTCGAGAAGCACGCCTCCCAGAAGGAT
TACGCCACCGGCTTCGGAGGCAAATTTGGAGTGCAGTCCGATCGGGTGGA
TAAATCCGCCGTGGGCTGGGATCACATCGAGAAGGTGGAGAAGCACGAGT
CTCAGAAGGATTACTCCAAGGGCTTTGGCGGCAAGTTTGGCGTTCAGGAG
GACCGAAAGGACAAGTCCGCGGTGGGATGGGACCACAAAGAGGCTCCGCA
GAAGCACGCCAGCCAGGTGGACCACAAGGTCAAGCCAGTCATCGAAGGTG
CCAAGCCTTCCAATTTGCGTGCCAAGTTCGAGAATCTGGCTAAAAACTCC
GAGGAGGAGTCACGTAAGCGGGCCGAGGAACAGAAACGTCTCCGTGAGGC
CAAGGACAAGCGGGATCGGGAGGAAGCCGCCAAGAAGACTGTGGCCGAGA
ACACTCCTCGTACCTCGACGGAAGCACCGCCTCCAAAGGGCAGCAGGGCG
GCCATCCAGACAGGTCGGACCGGTGGCATTGGCAATGCTATCAGTGCATT
TAACCAGATGCAGTCGCCTGTTTCTGAAACCCCTCCAGCACGAAAGGAAC
CCATTATCATTCCCAAGGCGCAGCCTGTTAAAATAGAATTAGAAGCAAAG
GAGGAGCCAACGGCAAGTACAACATCAGCTGCGGTTGCTCCTACTCCGAC
AGTGGTCCCCGCTCGAGAGCCGGAAACAGCTCCAGTGGCCAAGGCTGCAG
CTCCACCACCAGATGTGGTGCCCCAAATTGAGGTTGAGACCGTGGACACG
CCTCCCAGAAGTGAGCCGCAATCACCAGTGTATGTGCCGACGCCTCAACC
CGAAGTCCACGCCCAAGTCCAAGTCCAACCTGAGCCGCAACCTCAAGCCG
ATCCTGAGCCAGTAGTTGAAGAAGAGCCACTGTACCAGAACCAGGCCGAG
ATTAAGGCTGCCTCGCCCTTGCCACCAACGAATGGAACCGTTTCAGAGGC
TGTTGCTCCGAGTGGCACCGCAACCGTTCCCGAGGAGGCAATCTACGCGA
ACTCAGACAATTTGGCCGACTATCTGGAGGACACCGGAATCCACGCCATT
GCCCTGTACGACTACCAGGCGGCGGATGACGACGAGATATCCTTTGATCC
AGATGACGTGATCACCCACATCGAGAAGATCGACGATGGGTGGTGGAGGG
GATTGTGCAAGAACCGCTACGGACTCTTTCCAGCCAACTACGTGCAGGTG
GTGGGACAGAACTCATAAAAGCTTCCAATTGAAATTCACGATAGAACAAA
ATCAAATTGTATTTACATACTAACGAAAACGATAATACTGATGTTGGATT
ATAAACCATATAAACCAATTCGCAACTAACCCAGCCCATTTCCCATCCAT
TGTTTACCCTCTTAACCCTCCAAATTATGTGCAACGAATGGCTAGATATT
GAATTATTATTGTAATTTGTTATGCTAGCACTTAAAGTAACCGTGGTATT
CCATTTTTGATATATGTATCATTTATTGCATTTTACATTCTTTGTATTTA
ACACATTTATTTTACCAAGAAAATATGCCAAGCTATTTTAGATATCTCTC
ATTTCATATTTTATGCATTAGTTATGATATTTGTGTCAAGTAACGATTTT
GGTTTTTTTGAATTGTATAAAGTCTACGAGAGTTTCCCGTGTCAGGTGAT
CTGATCTAATGTTAAAGACGGATCTAATGTTGAAGACAGTCACAAACAAA
AAGTCTGCTCTTTTGATAAAGAAATACATAATTAATAAAGTTAAATAATA
ACGAGTTCTCTCTTAAAAAAAAAAAAAAAAAAA

LD29964.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-RA 2541 Cortactin-RA 173..2539 1..2367 11835 100 Plus
Cortactin.b 2442 Cortactin.b 76..2442 1..2364 11765 99.8 Plus
Cortactin.c 2408 Cortactin.c 70..2408 26..2364 11695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16885551..16887205 2364..709 8020 99.1 Minus
chr3R 27901430 chr3R 16887296..16887699 709..306 2005 99.8 Minus
chr3R 27901430 chr3R 16887767..16887977 305..95 1010 98.6 Minus
chr3R 27901430 chr3R 16888164..16888257 94..1 455 98.9 Minus
chr3R 27901430 chr3R 16887329..16887589 787..527 300 74.3 Minus
chr3R 27901430 chr3R 16887296..16887500 598..394 215 73.7 Minus
chr3R 27901430 chr3R 16887441..16887545 786..682 195 79 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21061677..21063335 2367..709 8295 100 Minus
3R 32079331 3R 21063426..21063829 709..306 2020 100 Minus
3R 32079331 3R 21063898..21064108 305..95 1055 100 Minus
3R 32079331 3R 21064295..21064388 94..1 470 100 Minus
3R 32079331 3R 21063459..21063741 787..505 305 73.9 Minus
3R 32079331 3R 21063426..21063630 598..394 215 73.7 Minus
3R 32079331 3R 21063571..21063675 786..682 195 79 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20802508..20804166 2367..709 8295 100 Minus
3R 31820162 3R 20804257..20804660 709..306 2020 100 Minus
3R 31820162 3R 20804729..20804939 305..95 1055 100 Minus
3R 31820162 3R 20805126..20805219 94..1 470 100 Minus
3R 31820162 3R 20804290..20804497 787..580 290 75.9 Minus
3R 31820162 3R 20804402..20804506 786..682 195 79 Minus
3R 31820162 3R 20804089..20804151 564..502 150 82.5 Minus
3R 31820162 3R 20804523..20804569 776..730 145 87.2 Minus
3R 31820162 3R 20804099..20804145 443..397 145 87.2 Minus
Blast to na_te.dros performed 2019-03-16 11:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3875..4097 2222..2013 147 57.3 Minus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5609..5663 192..246 122 69.1 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 33..121 2100..2013 119 62.6 Minus
gypsy4 6852 gypsy4 GYPSY4 6852bp 5049..5137 2096..2186 116 61.5 Plus

LD29964.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:40:45 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16885551..16887204 710..2364 99 <- Minus
chr3R 16887296..16887699 306..709 99 <- Minus
chr3R 16887767..16887977 95..305 98 <- Minus
chr3R 16888164..16888257 1..94 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:39 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 1..1680 139..1818 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:15 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 1..1680 139..1818 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:35:39 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 1..1680 139..1818 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:51:52 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 1..1680 139..1818 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:35 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 1..1680 139..1818 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:16:31 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 76..2439 1..2364 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:15 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 76..2439 1..2364 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:35:39 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 53..2416 1..2364 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:51:53 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 76..2439 1..2364 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:35 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 53..2416 1..2364 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:40:45 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21061680..21063334 710..2364 100 <- Minus
3R 21063426..21063829 306..709 100 <- Minus
3R 21063898..21064108 95..305 100 <- Minus
3R 21064295..21064388 1..94 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:40:45 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21061680..21063334 710..2364 100 <- Minus
3R 21063426..21063829 306..709 100 <- Minus
3R 21063898..21064108 95..305 100 <- Minus
3R 21064295..21064388 1..94 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:40:45 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21061680..21063334 710..2364 100 <- Minus
3R 21063426..21063829 306..709 100 <- Minus
3R 21063898..21064108 95..305 100 <- Minus
3R 21064295..21064388 1..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:35:39 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16887402..16889056 710..2364 100 <- Minus
arm_3R 16889148..16889551 306..709 100 <- Minus
arm_3R 16889620..16889830 95..305 100 <- Minus
arm_3R 16890017..16890110 1..94 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:21 Download gff for LD29964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20802511..20804165 710..2364 100 <- Minus
3R 20804257..20804660 306..709 100 <- Minus
3R 20804729..20804939 95..305 100 <- Minus
3R 20805126..20805219 1..94 100   Minus

LD29964.pep Sequence

Translation from 138 to 1817

> LD29964.pep
MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGR
TAGTIDMDKLREETEQADLDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSA
VGHDYQGKVGKHASQKDYSDGFGGKFGVQEDRKDKSAVGWDHVEKVEKHA
SQKDYATGFGGKFGVQSDRVDKSAVGWDHIEKVEKHESQKDYSKGFGGKF
GVQEDRKDKSAVGWDHKEAPQKHASQVDHKVKPVIEGAKPSNLRAKFENL
AKNSEEESRKRAEEQKRLREAKDKRDREEAAKKTVAENTPRTSTEAPPPK
GSRAAIQTGRTGGIGNAISAFNQMQSPVSETPPARKEPIIIPKAQPVKIE
LEAKEEPTASTTSAAVAPTPTVVPAREPETAPVAKAAAPPPDVVPQIEVE
TVDTPPRSEPQSPVYVPTPQPEVHAQVQVQPEPQPQADPEPVVEEEPLYQ
NQAEIKAASPLPPTNGTVSEAVAPSGTATVPEEAIYANSDNLADYLEDTG
IHAIALYDYQAADDDEISFDPDDVITHIEKIDDGWWRGLCKNRYGLFPAN
YVQVVGQNS*

LD29964.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18522-PA 548 GF18522-PA 1..548 1..559 2351 82.4 Plus
Dana\GF10969-PA 519 GF10969-PA 427..519 469..556 239 49.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14937-PA 555 GG14937-PA 1..555 1..559 2752 94.6 Plus
Dere\GG13760-PA 533 GG13760-PA 441..533 469..556 242 51.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23174-PA 557 GH23174-PA 1..557 1..559 2096 77.1 Plus
Dgri\GH16682-PA 532 GH16682-PA 440..532 469..556 249 51.6 Plus
Dgri\GH24032-PA 212 GH24032-PA 120..212 469..556 243 50.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-PD 559 CG3637-PD 1..559 1..559 2942 100 Plus
Cortactin-PC 559 CG3637-PC 1..559 1..559 2942 100 Plus
Cortactin-PB 559 CG3637-PB 1..559 1..559 2942 100 Plus
Cortactin-PA 559 CG3637-PA 1..559 1..559 2942 100 Plus
Abp1-PA 531 CG10083-PA 184..530 248..555 293 29.1 Plus
Abi-PE 472 CG9749-PE 196..469 290..553 188 28.4 Plus
Abi-PC 472 CG9749-PC 196..469 290..553 188 28.4 Plus
Abi-PF 473 CG9749-PF 196..470 290..553 187 28.4 Plus
Abi-PB 473 CG9749-PB 196..470 290..553 187 28.4 Plus
Abi-PA 473 CG9749-PA 196..470 290..553 187 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10305-PA 553 GI10305-PA 1..553 1..559 2235 77.4 Plus
Dmoj\GI11368-PA 526 GI11368-PA 258..526 266..556 255 29.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12684-PA 563 GL12684-PA 1..563 1..559 2273 82.4 Plus
Dper\GL20789-PA 531 GL20789-PA 470..531 496..556 233 64.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17577-PA 563 GA17577-PA 1..563 1..559 2230 82.6 Plus
Dpse\GA10060-PA 531 GA10060-PA 470..531 496..556 233 64.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15108-PA 549 GM15108-PA 1..549 1..559 2787 95.7 Plus
Dsec\GM24586-PA 531 GM24586-PA 439..531 469..556 243 51.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20012-PA 549 GD20012-PA 1..549 1..559 2787 95.7 Plus
Dsim\GD12654-PA 531 GD12654-PA 439..531 469..556 243 51.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10159-PA 549 GJ10159-PA 1..549 1..559 2150 77 Plus
Dvir\GJ11623-PA 524 GJ11623-PA 291..524 323..556 250 33.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13516-PA 557 GK13516-PA 1..556 1..555 2204 78.1 Plus
Dwil\GK17105-PA 534 GK17105-PA 442..534 469..556 240 49.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20057-PA 531 GE20057-PA 439..531 469..556 237 50.5 Plus

LD29964.hyp Sequence

Translation from 138 to 1817

> LD29964.hyp
MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGR
TAGTIDMDKLREETEQADLDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSA
VGHDYQGKVGKHASQKDYSDGFGGKFGVQEDRKDKSAVGWDHVEKVEKHA
SQKDYATGFGGKFGVQSDRVDKSAVGWDHIEKVEKHESQKDYSKGFGGKF
GVQEDRKDKSAVGWDHKEAPQKHASQVDHKVKPVIEGAKPSNLRAKFENL
AKNSEEESRKRAEEQKRLREAKDKRDREEAAKKTVAENTPRTSTEAPPPK
GSRAAIQTGRTGGIGNAISAFNQMQSPVSETPPARKEPIIIPKAQPVKIE
LEAKEEPTASTTSAAVAPTPTVVPAREPETAPVAKAAAPPPDVVPQIEVE
TVDTPPRSEPQSPVYVPTPQPEVHAQVQVQPEPQPQADPEPVVEEEPLYQ
NQAEIKAASPLPPTNGTVSEAVAPSGTATVPEEAIYANSDNLADYLEDTG
IHAIALYDYQAADDDEISFDPDDVITHIEKIDDGWWRGLCKNRYGLFPAN
YVQVVGQNS*

LD29964.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-PD 559 CG3637-PD 1..559 1..559 2942 100 Plus
Cortactin-PC 559 CG3637-PC 1..559 1..559 2942 100 Plus
Cortactin-PB 559 CG3637-PB 1..559 1..559 2942 100 Plus
Cortactin-PA 559 CG3637-PA 1..559 1..559 2942 100 Plus
Abp1-PA 531 CG10083-PA 184..530 248..555 293 29.1 Plus