BDGP Sequence Production Resources |
Search the DGRC for LD29964
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 299 |
Well: | 64 |
Vector: | pOT2 |
Associated Gene/Transcript | Cortactin-RA |
Protein status: | LD29964.pep: gold |
Preliminary Size: | 2615 |
Sequenced Size: | 2383 |
Gene | Date | Evidence |
---|---|---|
CG3637 | 2001-01-01 | Release 2 assignment |
CG3637 | 2001-07-04 | Blastp of sequenced clone |
CG3637 | 2003-01-01 | Sim4 clustering to Release 3 |
Cortactin | 2008-04-29 | Release 5.5 accounting |
Cortactin | 2008-08-15 | Release 5.9 accounting |
Cortactin | 2008-12-18 | 5.12 accounting |
2383 bp (2383 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051774
> LD29964.complete AATTGTTTAACCCTTCTCCTCCCAGAAATTTGCAGACATCCCTAGCGGCA TCAGATCATAAGTTCCTCTTGCAGTAGGAGTTAGTCATCGGGATATAAGG ATAAGCGAGTAACCAGCGACCAGAAACCGGTAAAAAGAATGTGGAAGGCA AGTGCCGGTCACCAGATTCAGGCCACCAGTGCAGCCTCCGCGGAGGACGA CGACTGGGAGACGGATCCGGACTTCGTGAACGATGTCAGTGAGCAGGAGC AGCGCTGGGGATCAAAGACGATCGACGGCAGCGGTCGCACAGCAGGCACC ATCGACATGGACAAGCTGCGCGAGGAGACGGAGCAGGCCGATCTGGACAA GAAGAAGCAGCTGCTGAAGGATCAGAACGCAGGATACGGATACGGGGGCA AGTTTGGCGTTGAGAAGGACCGCATGGACAAGTCGGCTGTGGGTCATGAC TACCAGGGCAAGGTGGGAAAGCACGCCTCGCAGAAGGACTACAGCGATGG TTTTGGGGGAAAGTTCGGAGTGCAAGAGGATCGCAAGGACAAGTCTGCCG TGGGCTGGGACCACGTCGAAAAGGTCGAGAAGCACGCCTCCCAGAAGGAT TACGCCACCGGCTTCGGAGGCAAATTTGGAGTGCAGTCCGATCGGGTGGA TAAATCCGCCGTGGGCTGGGATCACATCGAGAAGGTGGAGAAGCACGAGT CTCAGAAGGATTACTCCAAGGGCTTTGGCGGCAAGTTTGGCGTTCAGGAG GACCGAAAGGACAAGTCCGCGGTGGGATGGGACCACAAAGAGGCTCCGCA GAAGCACGCCAGCCAGGTGGACCACAAGGTCAAGCCAGTCATCGAAGGTG CCAAGCCTTCCAATTTGCGTGCCAAGTTCGAGAATCTGGCTAAAAACTCC GAGGAGGAGTCACGTAAGCGGGCCGAGGAACAGAAACGTCTCCGTGAGGC CAAGGACAAGCGGGATCGGGAGGAAGCCGCCAAGAAGACTGTGGCCGAGA ACACTCCTCGTACCTCGACGGAAGCACCGCCTCCAAAGGGCAGCAGGGCG GCCATCCAGACAGGTCGGACCGGTGGCATTGGCAATGCTATCAGTGCATT TAACCAGATGCAGTCGCCTGTTTCTGAAACCCCTCCAGCACGAAAGGAAC CCATTATCATTCCCAAGGCGCAGCCTGTTAAAATAGAATTAGAAGCAAAG GAGGAGCCAACGGCAAGTACAACATCAGCTGCGGTTGCTCCTACTCCGAC AGTGGTCCCCGCTCGAGAGCCGGAAACAGCTCCAGTGGCCAAGGCTGCAG CTCCACCACCAGATGTGGTGCCCCAAATTGAGGTTGAGACCGTGGACACG CCTCCCAGAAGTGAGCCGCAATCACCAGTGTATGTGCCGACGCCTCAACC CGAAGTCCACGCCCAAGTCCAAGTCCAACCTGAGCCGCAACCTCAAGCCG ATCCTGAGCCAGTAGTTGAAGAAGAGCCACTGTACCAGAACCAGGCCGAG ATTAAGGCTGCCTCGCCCTTGCCACCAACGAATGGAACCGTTTCAGAGGC TGTTGCTCCGAGTGGCACCGCAACCGTTCCCGAGGAGGCAATCTACGCGA ACTCAGACAATTTGGCCGACTATCTGGAGGACACCGGAATCCACGCCATT GCCCTGTACGACTACCAGGCGGCGGATGACGACGAGATATCCTTTGATCC AGATGACGTGATCACCCACATCGAGAAGATCGACGATGGGTGGTGGAGGG GATTGTGCAAGAACCGCTACGGACTCTTTCCAGCCAACTACGTGCAGGTG GTGGGACAGAACTCATAAAAGCTTCCAATTGAAATTCACGATAGAACAAA ATCAAATTGTATTTACATACTAACGAAAACGATAATACTGATGTTGGATT ATAAACCATATAAACCAATTCGCAACTAACCCAGCCCATTTCCCATCCAT TGTTTACCCTCTTAACCCTCCAAATTATGTGCAACGAATGGCTAGATATT GAATTATTATTGTAATTTGTTATGCTAGCACTTAAAGTAACCGTGGTATT CCATTTTTGATATATGTATCATTTATTGCATTTTACATTCTTTGTATTTA ACACATTTATTTTACCAAGAAAATATGCCAAGCTATTTTAGATATCTCTC ATTTCATATTTTATGCATTAGTTATGATATTTGTGTCAAGTAACGATTTT GGTTTTTTTGAATTGTATAAAGTCTACGAGAGTTTCCCGTGTCAGGTGAT CTGATCTAATGTTAAAGACGGATCTAATGTTGAAGACAGTCACAAACAAA AAGTCTGCTCTTTTGATAAAGAAATACATAATTAATAAAGTTAAATAATA ACGAGTTCTCTCTTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cortactin-RA | 2541 | Cortactin-RA | 173..2539 | 1..2367 | 11835 | 100 | Plus |
Cortactin.b | 2442 | Cortactin.b | 76..2442 | 1..2364 | 11765 | 99.8 | Plus |
Cortactin.c | 2408 | Cortactin.c | 70..2408 | 26..2364 | 11695 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16885551..16887205 | 2364..709 | 8020 | 99.1 | Minus |
chr3R | 27901430 | chr3R | 16887296..16887699 | 709..306 | 2005 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 16887767..16887977 | 305..95 | 1010 | 98.6 | Minus |
chr3R | 27901430 | chr3R | 16888164..16888257 | 94..1 | 455 | 98.9 | Minus |
chr3R | 27901430 | chr3R | 16887329..16887589 | 787..527 | 300 | 74.3 | Minus |
chr3R | 27901430 | chr3R | 16887296..16887500 | 598..394 | 215 | 73.7 | Minus |
chr3R | 27901430 | chr3R | 16887441..16887545 | 786..682 | 195 | 79 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 21061677..21063335 | 2367..709 | 8295 | 100 | Minus |
3R | 32079331 | 3R | 21063426..21063829 | 709..306 | 2020 | 100 | Minus |
3R | 32079331 | 3R | 21063898..21064108 | 305..95 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 21064295..21064388 | 94..1 | 470 | 100 | Minus |
3R | 32079331 | 3R | 21063459..21063741 | 787..505 | 305 | 73.9 | Minus |
3R | 32079331 | 3R | 21063426..21063630 | 598..394 | 215 | 73.7 | Minus |
3R | 32079331 | 3R | 21063571..21063675 | 786..682 | 195 | 79 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20802508..20804166 | 2367..709 | 8295 | 100 | Minus |
3R | 31820162 | 3R | 20804257..20804660 | 709..306 | 2020 | 100 | Minus |
3R | 31820162 | 3R | 20804729..20804939 | 305..95 | 1055 | 100 | Minus |
3R | 31820162 | 3R | 20805126..20805219 | 94..1 | 470 | 100 | Minus |
3R | 31820162 | 3R | 20804290..20804497 | 787..580 | 290 | 75.9 | Minus |
3R | 31820162 | 3R | 20804402..20804506 | 786..682 | 195 | 79 | Minus |
3R | 31820162 | 3R | 20804089..20804151 | 564..502 | 150 | 82.5 | Minus |
3R | 31820162 | 3R | 20804523..20804569 | 776..730 | 145 | 87.2 | Minus |
3R | 31820162 | 3R | 20804099..20804145 | 443..397 | 145 | 87.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3875..4097 | 2222..2013 | 147 | 57.3 | Minus |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5609..5663 | 192..246 | 122 | 69.1 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 33..121 | 2100..2013 | 119 | 62.6 | Minus |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 5049..5137 | 2096..2186 | 116 | 61.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16885551..16887204 | 710..2364 | 99 | <- | Minus |
chr3R | 16887296..16887699 | 306..709 | 99 | <- | Minus |
chr3R | 16887767..16887977 | 95..305 | 98 | <- | Minus |
chr3R | 16888164..16888257 | 1..94 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cortactin-RA | 1..1680 | 139..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cortactin-RA | 1..1680 | 139..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cortactin-RB | 1..1680 | 139..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cortactin-RA | 1..1680 | 139..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cortactin-RB | 1..1680 | 139..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cortactin-RA | 76..2439 | 1..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cortactin-RA | 76..2439 | 1..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cortactin-RA | 53..2416 | 1..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cortactin-RA | 76..2439 | 1..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cortactin-RA | 53..2416 | 1..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21061680..21063334 | 710..2364 | 100 | <- | Minus |
3R | 21063426..21063829 | 306..709 | 100 | <- | Minus |
3R | 21063898..21064108 | 95..305 | 100 | <- | Minus |
3R | 21064295..21064388 | 1..94 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21061680..21063334 | 710..2364 | 100 | <- | Minus |
3R | 21063426..21063829 | 306..709 | 100 | <- | Minus |
3R | 21063898..21064108 | 95..305 | 100 | <- | Minus |
3R | 21064295..21064388 | 1..94 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21061680..21063334 | 710..2364 | 100 | <- | Minus |
3R | 21063426..21063829 | 306..709 | 100 | <- | Minus |
3R | 21063898..21064108 | 95..305 | 100 | <- | Minus |
3R | 21064295..21064388 | 1..94 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16887402..16889056 | 710..2364 | 100 | <- | Minus |
arm_3R | 16889148..16889551 | 306..709 | 100 | <- | Minus |
arm_3R | 16889620..16889830 | 95..305 | 100 | <- | Minus |
arm_3R | 16890017..16890110 | 1..94 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20802511..20804165 | 710..2364 | 100 | <- | Minus |
3R | 20804257..20804660 | 306..709 | 100 | <- | Minus |
3R | 20804729..20804939 | 95..305 | 100 | <- | Minus |
3R | 20805126..20805219 | 1..94 | 100 | Minus |
Translation from 138 to 1817
> LD29964.pep MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGR TAGTIDMDKLREETEQADLDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSA VGHDYQGKVGKHASQKDYSDGFGGKFGVQEDRKDKSAVGWDHVEKVEKHA SQKDYATGFGGKFGVQSDRVDKSAVGWDHIEKVEKHESQKDYSKGFGGKF GVQEDRKDKSAVGWDHKEAPQKHASQVDHKVKPVIEGAKPSNLRAKFENL AKNSEEESRKRAEEQKRLREAKDKRDREEAAKKTVAENTPRTSTEAPPPK GSRAAIQTGRTGGIGNAISAFNQMQSPVSETPPARKEPIIIPKAQPVKIE LEAKEEPTASTTSAAVAPTPTVVPAREPETAPVAKAAAPPPDVVPQIEVE TVDTPPRSEPQSPVYVPTPQPEVHAQVQVQPEPQPQADPEPVVEEEPLYQ NQAEIKAASPLPPTNGTVSEAVAPSGTATVPEEAIYANSDNLADYLEDTG IHAIALYDYQAADDDEISFDPDDVITHIEKIDDGWWRGLCKNRYGLFPAN YVQVVGQNS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18522-PA | 548 | GF18522-PA | 1..548 | 1..559 | 2351 | 82.4 | Plus |
Dana\GF10969-PA | 519 | GF10969-PA | 427..519 | 469..556 | 239 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14937-PA | 555 | GG14937-PA | 1..555 | 1..559 | 2752 | 94.6 | Plus |
Dere\GG13760-PA | 533 | GG13760-PA | 441..533 | 469..556 | 242 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23174-PA | 557 | GH23174-PA | 1..557 | 1..559 | 2096 | 77.1 | Plus |
Dgri\GH16682-PA | 532 | GH16682-PA | 440..532 | 469..556 | 249 | 51.6 | Plus |
Dgri\GH24032-PA | 212 | GH24032-PA | 120..212 | 469..556 | 243 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cortactin-PD | 559 | CG3637-PD | 1..559 | 1..559 | 2942 | 100 | Plus |
Cortactin-PC | 559 | CG3637-PC | 1..559 | 1..559 | 2942 | 100 | Plus |
Cortactin-PB | 559 | CG3637-PB | 1..559 | 1..559 | 2942 | 100 | Plus |
Cortactin-PA | 559 | CG3637-PA | 1..559 | 1..559 | 2942 | 100 | Plus |
Abp1-PA | 531 | CG10083-PA | 184..530 | 248..555 | 293 | 29.1 | Plus |
Abi-PE | 472 | CG9749-PE | 196..469 | 290..553 | 188 | 28.4 | Plus |
Abi-PC | 472 | CG9749-PC | 196..469 | 290..553 | 188 | 28.4 | Plus |
Abi-PF | 473 | CG9749-PF | 196..470 | 290..553 | 187 | 28.4 | Plus |
Abi-PB | 473 | CG9749-PB | 196..470 | 290..553 | 187 | 28.4 | Plus |
Abi-PA | 473 | CG9749-PA | 196..470 | 290..553 | 187 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10305-PA | 553 | GI10305-PA | 1..553 | 1..559 | 2235 | 77.4 | Plus |
Dmoj\GI11368-PA | 526 | GI11368-PA | 258..526 | 266..556 | 255 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12684-PA | 563 | GL12684-PA | 1..563 | 1..559 | 2273 | 82.4 | Plus |
Dper\GL20789-PA | 531 | GL20789-PA | 470..531 | 496..556 | 233 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17577-PA | 563 | GA17577-PA | 1..563 | 1..559 | 2230 | 82.6 | Plus |
Dpse\GA10060-PA | 531 | GA10060-PA | 470..531 | 496..556 | 233 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15108-PA | 549 | GM15108-PA | 1..549 | 1..559 | 2787 | 95.7 | Plus |
Dsec\GM24586-PA | 531 | GM24586-PA | 439..531 | 469..556 | 243 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20012-PA | 549 | GD20012-PA | 1..549 | 1..559 | 2787 | 95.7 | Plus |
Dsim\GD12654-PA | 531 | GD12654-PA | 439..531 | 469..556 | 243 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10159-PA | 549 | GJ10159-PA | 1..549 | 1..559 | 2150 | 77 | Plus |
Dvir\GJ11623-PA | 524 | GJ11623-PA | 291..524 | 323..556 | 250 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13516-PA | 557 | GK13516-PA | 1..556 | 1..555 | 2204 | 78.1 | Plus |
Dwil\GK17105-PA | 534 | GK17105-PA | 442..534 | 469..556 | 240 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20057-PA | 531 | GE20057-PA | 439..531 | 469..556 | 237 | 50.5 | Plus |
Translation from 138 to 1817
> LD29964.hyp MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGR TAGTIDMDKLREETEQADLDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSA VGHDYQGKVGKHASQKDYSDGFGGKFGVQEDRKDKSAVGWDHVEKVEKHA SQKDYATGFGGKFGVQSDRVDKSAVGWDHIEKVEKHESQKDYSKGFGGKF GVQEDRKDKSAVGWDHKEAPQKHASQVDHKVKPVIEGAKPSNLRAKFENL AKNSEEESRKRAEEQKRLREAKDKRDREEAAKKTVAENTPRTSTEAPPPK GSRAAIQTGRTGGIGNAISAFNQMQSPVSETPPARKEPIIIPKAQPVKIE LEAKEEPTASTTSAAVAPTPTVVPAREPETAPVAKAAAPPPDVVPQIEVE TVDTPPRSEPQSPVYVPTPQPEVHAQVQVQPEPQPQADPEPVVEEEPLYQ NQAEIKAASPLPPTNGTVSEAVAPSGTATVPEEAIYANSDNLADYLEDTG IHAIALYDYQAADDDEISFDPDDVITHIEKIDDGWWRGLCKNRYGLFPAN YVQVVGQNS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cortactin-PD | 559 | CG3637-PD | 1..559 | 1..559 | 2942 | 100 | Plus |
Cortactin-PC | 559 | CG3637-PC | 1..559 | 1..559 | 2942 | 100 | Plus |
Cortactin-PB | 559 | CG3637-PB | 1..559 | 1..559 | 2942 | 100 | Plus |
Cortactin-PA | 559 | CG3637-PA | 1..559 | 1..559 | 2942 | 100 | Plus |
Abp1-PA | 531 | CG10083-PA | 184..530 | 248..555 | 293 | 29.1 | Plus |