Clone LD29969 Report

Search the DGRC for LD29969

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:299
Well:69
Vector:pOT2
Associated Gene/TranscriptCG18787-RA
Protein status:LD29969.pep: wuzgold
Preliminary Size:1595
Sequenced Size:1386

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18787 2001-07-04 Blastp of sequenced clone
CG18787 2003-01-01 Sim4 clustering to Release 3
CG18789 2008-04-29 Release 5.5 accounting
CG18787 2008-08-15 Release 5.9 accounting
CG18787 2008-12-18 5.12 accounting

Clone Sequence Records

LD29969.complete Sequence

1386 bp (1386 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060393

> LD29969.complete
AAGACAATTATAAACAAAAGTACAAAAGTTGAAGCAGTTTTGAAATAATA
AATATAGGAAATAGGCAAAAATTAAAATCAAATTTAAATATGGTTGTCTG
CCGGTTCTTTCAACAAGGCTCCTGCCGCTATGGCGCAAAGTGCAACAACG
AGCATTTCGATGTTAAGCAATATCTCAAAGCCGACATGGAATCCAGCCTC
AATGGCAAGATGTGGCCTTTGTCCGCCTACGGACCCTTTAAGGACAAAGC
GAATTTCCCCAACTTTATTCAGGACCAATCCTTCGAGGAGGTGCGGTTCA
TGTGTTACGAGGCCAAACGACAAAACCAATTCGAACAGTTCAGCCAACAG
TTTAACCGTGAGGTCCTAGAGGCTAACAACAAGATGAAGACCATGCTTCA
GATGTCGCCGCAGGTCCTGGAAATGATGATCAAGATCCACGAGACGCCGG
AGGGCGGCACTGTGTCGGCTGCCCCTCAGCAGTCCAGTAATCCCTTCGCT
GCAGCAGCTCCGGCTGCCGCCAATACATCTGCATCCATTTTTGGAAAGCC
CACGCTGAGTGCGGGAAATATATTTGGGAATGCCACAAGCCAAGCCAGCA
ACACCAATAGCATTTTCGGCGGAACGATTAGCAATGCCAATGCAAGGAAT
AGCATTTTTGGTGTAGGAGCTGCGGCAACAGGTGCACAAAGTGTCTTTGG
ACAGCCACAGCAGCAACAGCTGCAGCCTGCTGCACAAGCTTTCCAAGGGG
GCAACATTTTCGCCCAGGCGCAGGTTCAGGTGCAAGCTCAGCCAGTGAAT
CCTAATCCTTTCGGTGGTTTCCAACAGCAGCAGCAGCAACCGCAGTCGAC
GGGAATCTTTGGCCAAGCCGCAAGCCAAAATATGGGCGGAATGTTTACTC
AGGCTTCTCAGCAACTACAACAGCAGCAGCAGGCAGCTGCCTCCGGATTA
TTTGCTCAAGCAGCAGCATCTGCATTCCCTAATCAACAACAGATGCAGCA
GCAGCAACAGATGCAGCAGCAGCAACAGATGCAACAGCAACAAATGCATC
AGCAGCAGCAGATGCAATAGCAACAAATGCAGCAGCAACAACAATTTCAA
ATGCAACAGCAACAGCAAATGATGCAGCAGCAGCAGCAGCAGCAAGCTCA
ACCGACCAACGAAATCCAGTCCTCAGTTTACAGTCGCATGGAGGATCTCA
ACGAGCAGGAAATCGAAGCATTCAAGGCGGATCAATTTCTACCAGGTGCC
TTGCCATTCAAACCGCCTCCACGGAATCTTTGCTGAACCAAACACTTAAT
GGTACACTAGCGTATAATGTATATATTTTTACAGAAGCTGATATAATAAA
ATAATTAGAACTTAAAAAAAAAAAAAAAAAAAAAAA

LD29969.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18787-RA 1587 CG18787-RA 220..1583 1..1364 6820 100 Plus
CG18789-RA 1308 CG18789-RA 23..1308 1..1286 6260 99.3 Plus
CG18787.a 1556 CG18787.a 631..1556 361..1286 4460 99 Plus
CG18787.a 1556 CG18787.a 220..637 1..418 2090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11996562..11997762 1363..163 5990 99.9 Minus
chr2L 23010047 chr2L 11992642..11993851 1363..163 5785 98.9 Minus
chr2L 23010047 chr2L 11993902..11994068 167..1 835 100 Minus
chr2L 23010047 chr2L 11997813..11997979 167..1 835 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11997899..11999100 1364..163 5995 99.9 Minus
2L 23513712 2L 11993988..11995189 1364..163 5805 99.2 Minus
2L 23513712 2L 11995240..11995406 167..1 835 100 Minus
2L 23513712 2L 11999151..11999317 167..1 835 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11997899..11999100 1364..163 5995 99.9 Minus
2L 23513712 2L 11993988..11995189 1364..163 5825 99.1 Minus
2L 23513712 2L 11999151..11999317 167..1 835 100 Minus
2L 23513712 2L 11995240..11995406 167..1 835 100 Minus
Blast to na_te.dros performed 2019-03-16 20:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6699..6962 886..1161 435 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2599 923..1220 407 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2548 909..1147 405 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..7004 909..1152 346 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2473..2664 959..1152 306 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2663 822..1168 302 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2966 822..1169 291 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2796..2999 909..1115 289 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2811..3031 909..1135 277 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..7054 909..1164 277 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2640..2942 909..1224 258 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..7130 909..1218 255 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2764 822..1207 243 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2584..2870 907..1183 228 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2418..2720 822..1120 227 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..7086 822..1144 195 55.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6681..7231 623..1168 192 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2999 822..1037 158 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6842..7092 822..1078 153 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..7172 822..1169 142 54.7 Plus
roo 9092 roo DM_ROO 9092bp 1071..1163 910..1002 140 63.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3276..3430 903..1054 138 58.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6603..6727 909..1042 115 60.4 Plus
TART-C 11124 TART-C TARTC 11124bp 8059..8183 909..1042 115 60.4 Plus

LD29969.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:30:54 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11996939..11997758 167..986 100 <- Minus
chr2L 11997814..11997979 1..166 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:40 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
CG18789-RA 1..1197 90..1286 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:28 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
CG18789-RA 1..1197 90..1286 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:17 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
CG18787-RB 1..1197 90..1286 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:43:07 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
CG18789-RA 1..1197 90..1286 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:20 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
CG18787-RB 1..1197 90..1286 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:14:35 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
CG18787-RA 1..1363 1..1363 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:28 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
CG18787-RA 1..1363 1..1363 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:17 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
CG18787-RB 24..1386 1..1363 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:43:07 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
CG18787-RA 1..1363 1..1363 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:20 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
CG18787-RB 24..1386 1..1363 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:30:54 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11997900..11999096 167..1363 100 <- Minus
2L 11999152..11999317 1..166 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:30:54 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11997900..11999096 167..1363 100 <- Minus
2L 11999152..11999317 1..166 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:30:54 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11997900..11999096 167..1363 100 <- Minus
2L 11999152..11999317 1..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:17 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11997900..11999096 167..1363 100 <- Minus
arm_2L 11999152..11999317 1..166 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:26:09 Download gff for LD29969.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11997900..11999096 167..1363 100 <- Minus
2L 11999152..11999317 1..166 100   Minus

LD29969.hyp Sequence

Translation from 89 to 1069

> LD29969.hyp
MVVCRFFQQGSCRYGAKCNNEHFDVKQYLKADMESSLNGKMWPLSAYGPF
KDKANFPNFIQDQSFEEVRFMCYEAKRQNQFEQFSQQFNREVLEANNKMK
TMLQMSPQVLEMMIKIHETPEGGTVSAAPQQSSNPFAAAAPAAANTSASI
FGKPTLSAGNIFGNATSQASNTNSIFGGTISNANARNSIFGVGAAATGAQ
SVFGQPQQQQLQPAAQAFQGGNIFAQAQVQVQAQPVNPNPFGGFQQQQQQ
PQSTGIFGQAASQNMGGMFTQASQQLQQQQQAAASGLFAQAAASAFPNQQ
QMQQQQQMQQQQQMQQQQMHQQQQMQ*

LD29969.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18789-PA 398 CG18789-PA 1..326 1..326 1679 100 Plus
CG18787-PB 398 CG18787-PB 1..326 1..326 1679 100 Plus
Wnk-PN 2441 CG7177-PN 1044..1166 205..326 180 42.7 Plus
Wnk-PL 2441 CG7177-PL 1044..1166 205..326 180 42.7 Plus
Wnk-PM 2462 CG7177-PM 1044..1166 205..326 180 42.7 Plus

LD29969.pep Sequence

Translation from 89 to 1069

> LD29969.pep
MVVCRFFQQGSCRYGAKCNNEHFDVKQYLKADMESSLNGKMWPLSAYGPF
KDKANFPNFIQDQSFEEVRFMCYEAKRQNQFEQFSQQFNREVLEANNKMK
TMLQMSPQVLEMMIKIHETPEGGTVSAAPQQSSNPFAAAAPAAANTSASI
FGKPTLSAGNIFGNATSQASNTNSIFGGTISNANARNSIFGVGAAATGAQ
SVFGQPQQQQLQPAAQAFQGGNIFAQAQVQVQAQPVNPNPFGGFQQQQQQ
PQSTGIFGQAASQNMGGMFTQASQQLQQQQQAAASGLFAQAAASAFPNQQ
QMQQQQQMQQQQQMQQQQMHQQQQMQ*

LD29969.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14754-PA 366 GF14754-PA 1..281 1..297 770 64.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10287-PA 400 GG10287-PA 1..298 1..298 1067 86 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13061-PA 370 GH13061-PA 1..315 1..305 536 47.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18789-PA 398 CG18789-PA 1..326 1..326 1679 100 Plus
CG18787-PB 398 CG18787-PB 1..326 1..326 1679 100 Plus
Wnk-PO 2243 CG7177-PO 846..968 205..326 180 42.7 Plus
Wnk-PN 2441 CG7177-PN 1044..1166 205..326 180 42.7 Plus
Wnk-PL 2441 CG7177-PL 1044..1166 205..326 180 42.7 Plus
Wnk-PM 2462 CG7177-PM 1044..1166 205..326 180 42.7 Plus
ovo-PA 975 CG6824-PA 292..420 204..326 176 40.5 Plus
ovo-PD 1028 CG6824-PD 345..473 204..326 176 40.5 Plus
ovo-PC 1222 CG6824-PC 717..845 204..326 176 40.5 Plus
ovo-PE 1351 CG6824-PE 846..974 204..326 176 40.5 Plus
ovo-PB 1351 CG6824-PB 846..974 204..326 176 40.5 Plus
CG44085-PH 756 CG44085-PH 311..430 200..326 172 41.5 Plus
CG44085-PL 833 CG44085-PL 388..507 200..326 172 41.5 Plus
CG44085-PI 833 CG44085-PI 388..507 200..326 172 41.5 Plus
CG44085-PC 836 CG44085-PC 388..507 200..326 172 41.5 Plus
CG44085-PM 864 CG44085-PM 273..392 200..326 172 41.5 Plus
CG44085-PF 902 CG44085-PF 311..430 200..326 172 41.5 Plus
CG44085-PD 918 CG44085-PD 311..430 200..326 172 41.5 Plus
CG44085-PG 942 CG44085-PG 311..430 200..326 172 41.5 Plus
CG44085-PK 979 CG44085-PK 388..507 200..326 172 41.5 Plus
CG44085-PJ 979 CG44085-PJ 388..507 200..326 172 41.5 Plus
CG44085-PN 1007 CG44085-PN 388..507 200..326 172 41.5 Plus
CG44085-PP 2246 CG44085-PP 284..403 200..326 172 41.5 Plus
CG44085-PO 2381 CG44085-PO 273..392 200..326 172 41.5 Plus
Nup214-PA 1711 CG3820-PA 1395..1610 118..305 168 34.5 Plus
Smr-PF 3601 CG4013-PF 4..199 142..326 167 31.6 Plus
Smr-PE 3601 CG4013-PE 4..199 142..326 167 31.6 Plus
Smr-PD 3601 CG4013-PD 4..199 142..326 167 31.6 Plus
nej-PE 3266 CG15319-PE 1151..1293 206..326 161 37.9 Plus
nej-PB 3276 CG15319-PB 1151..1293 206..326 161 37.9 Plus
nej-PD 3276 CG15319-PD 1151..1293 206..326 161 37.9 Plus
nej-PC 3282 CG15319-PC 1157..1299 206..326 161 37.9 Plus
Smr-PG 3607 CG4013-PG 4..205 142..326 161 30.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17681-PA 381 GI17681-PA 1..182 1..190 568 59.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19578-PA 353 GL19578-PA 1..268 1..292 752 60.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15081-PA 378 GA15081-PA 1..268 1..292 754 61 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26462-PA 395 GM26462-PA 1..294 1..298 1154 93.3 Plus
Dsec\GM24560-PA 667 GM24560-PA 1..103 1..128 242 39.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22145-PA 399 GD22145-PA 1..297 1..298 1107 95 Plus
Dsim\GD12633-PA 694 GD12633-PA 1..127 1..127 331 47.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17466-PA 403 GJ17466-PA 1..315 1..275 623 50.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15175-PA 397 GK15175-PA 1..198 1..204 694 63.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12566-PA 402 GE12566-PA 1..294 1..298 976 84.2 Plus
Dyak\GE20032-PA 812 GE20032-PA 1..120 1..120 368 51.7 Plus