BDGP Sequence Production Resources |
Search the DGRC for LD30122
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 301 |
Well: | 22 |
Vector: | pOT2 |
Associated Gene/Transcript | Vap-33A-RB |
Protein status: | LD30122.pep: gold |
Preliminary Size: | 2321 |
Sequenced Size: | 2000 |
Gene | Date | Evidence |
---|---|---|
CG5014 | 2001-09-19 | Blastp of sequenced clone |
CG5014 | 2003-01-01 | Sim4 clustering to Release 3 |
Vap-33-1 | 2008-04-29 | Release 5.5 accounting |
Vap-33-1 | 2008-08-15 | Release 5.9 accounting |
Vap-33-1 | 2008-12-18 | 5.12 accounting |
2000 bp (2000 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060395
> LD30122.complete GAATATATGGCTTTTTTACATTTTGCGTTTTCAACTGAAGTTTGCGAAGA AACCGAAGCGTGGTAAACCACTGAAATCGAAAATATCGACAGAAAAGCGA CCTAAAGTCGGTGAAGAAGTCGCACGTTGATCGTTGTGTTTTTTTCCCGA AATTTTCTGCAAAAAGCCCGTGCGTGCGTGAGTTTCTCTGGCTCTTGCTT TTTTTTTGTCCATGCGTGTGTGTGTGGTCGCATAAATTTACCGATATTTC GCCTGTGAGAGCGAAACGAACGAAAAACGAAAGAAAAAAAGAGAGACGAG TAAAGTAAAACGAAACAGGCATAAAAACAGCAGCAGTTTTCTTGATATAT TTGGCTAAAAAACGCAAACCAAACAGCCAGCAAGAACAACAAATAGCTGG GCAAAAACAGGACGCACAAAAAATAAAATTAAAACGATAAGAGGCGAAAA GCGGAGAGAGTGAAATTCTCGGCAGCAACAACGACAAGAACAACACCAGG AGCAGCAGCAACAACAACAACAAAAGCCAGCCGCCACAATGAGCAAATCA CTCTTTGATCTTCCGTTGACCATTGAACCAGAACATGAGTTGCGTTTTGT GGGTCCCTTCACCCGACCCGTTGTCACAATCATGACTCTGCGCAACAACT CGGCTCTGCCTCTGGTCTTCAAGATCAAGACAACCGCCCCGAAACGCTAC TGCGTACGTCCAAACATCGGCAAGATAATTCCCTTTCGATCAACCCAGGT GGAGATCTGCCTTCAGCCATTCGTCTACGATCAGCAGGAGAAGAACAAGC ACAAGTTCATGGTGCAGAGCGTCCTGGCACCCATGGATGCTGATCTAAGC GATTTAAATAAATTGTGGAAGGATCTGGAGCCCGAGCAGCTGATGGACGC CAAACTGAAGTGCGTTTTCGAGATGCCCACCGCTGAGGCAAATGCTGAGA ACACCAGCGGTGGTGGTGCCGTTGGCGGCGGAACCGGAGCTGCCGGAGGC GGAAGCGCGGGTGCCAATACTAGCTCAGCCAGCGCTGAGGCGCTCGAGAG CAAGCCGAAGCTCTCCAGCGAGGATAAGTTTAAGCCATCCAATTTGCTCG AAACGTCTGAGAGTCTGGACTTGCTGTCCGGAGAGATCAAAGCGCTGCGT GAATGCAACATTGAATTGCGAAGAGAGAATCTTCACTTGAAGGATCAAAT CACACGTTTCCGGAGCTCGCCGGCCGTCAAACAGGTGAATGAGCCCTATG CCCCAGTCCTGGCTGAGAAGCAGATTCCGGTCTTTTACATTGCAGTTGCC ATTGCTGCGGCCATCGTTAGCCTCCTGCTGGGCAAATTCTTTCTCTGAAT GCCATAAACGAACGCCAGCAACATGCTACATGCAACGTGCAGCAACAGTA ACAGCAAGAACAGCGGCAACACCATCATACAGCAACAGCAACAACAAAAG CAAAAGCAGCAGCAGCAGCAGCAACTAACAATAGCAACAACAACGAAAGA AGAACAGCAGCAGCAGGAGCATTAAAATAAATTTAATTGGCAGAAGAAAC AAACCACAGAGACGAATGTAAAGCTGACTAAACCGGGGACCGTATACATT TAAACGGTTGTATTGAAAATCAAAAATAATCATTGTTTGTTAGCGAAACA AGTATCGCTCAGAATAGTATGGATTATGATGTGAGAAATATTGTTTGGTT CCAACATATTGCTCAAAGACAGATTGGCAGTTCTTGTTTTTAATACGAAT CTTAACGAGACTTAAGTGTAAAGCATTCGAAACAATTTTAAGCTGTATTG ACGCTTCGTGTATTTCAACCAAAAATATTTAAGTTTTTGCAAGATCTCGC TTGAATTAGTCGCAACCGGACTTTGAGTAATAAGAACATTTGGGCCCTAT GAAATCCCTCACATCATAATCAATACTTAAAAAAAAGAAAACATAACGAA TGATTACTTTTGGTACCTGGGCTAAACAAAACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vap-33-1.q | 3567 | Vap-33-1.q | 77..2076 | 1..2000 | 10000 | 100 | Plus |
Vap-33-1-RB | 2607 | Vap-33-1-RB | 77..2076 | 1..2000 | 10000 | 100 | Plus |
Vap-33-1.o | 2878 | Vap-33-1.o | 77..2076 | 1..2000 | 10000 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 3846089..3846878 | 1187..1982 | 3825 | 99 | Plus |
chrX | 22417052 | chrX | 3842327..3842698 | 1..369 | 1780 | 99.2 | Plus |
chrX | 22417052 | chrX | 3842807..3843044 | 370..604 | 1095 | 98.3 | Plus |
chrX | 22417052 | chrX | 3845156..3845369 | 865..1078 | 1070 | 100 | Plus |
chrX | 22417052 | chrX | 3844742..3844895 | 602..755 | 770 | 100 | Plus |
chrX | 22417052 | chrX | 3845434..3845550 | 1077..1193 | 585 | 100 | Plus |
chrX | 22417052 | chrX | 3844964..3845073 | 756..865 | 550 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 3952761..3953574 | 1187..2000 | 4055 | 99.9 | Plus |
X | 23542271 | X | 3949004..3949372 | 1..369 | 1845 | 100 | Plus |
X | 23542271 | X | 3949481..3949715 | 370..604 | 1175 | 100 | Plus |
X | 23542271 | X | 3951828..3952041 | 865..1078 | 1070 | 100 | Plus |
X | 23542271 | X | 3951414..3951567 | 602..755 | 770 | 100 | Plus |
X | 23542271 | X | 3952106..3952222 | 1077..1193 | 585 | 100 | Plus |
X | 23542271 | X | 3951636..3951745 | 756..865 | 550 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 3960859..3961672 | 1187..2000 | 4055 | 99.8 | Plus |
X | 23527363 | X | 3957102..3957470 | 1..369 | 1845 | 100 | Plus |
X | 23527363 | X | 3957579..3957813 | 370..604 | 1175 | 100 | Plus |
X | 23527363 | X | 3959926..3960139 | 865..1078 | 1070 | 100 | Plus |
X | 23527363 | X | 3959512..3959665 | 602..755 | 770 | 100 | Plus |
X | 23527363 | X | 3960204..3960320 | 1077..1193 | 585 | 100 | Plus |
X | 23527363 | X | 3959734..3959843 | 756..865 | 550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 3842327..3842698 | 1..369 | 99 | -> | Plus |
chrX | 3842807..3842909 | 370..472 | 99 | == | Plus |
chrX | 3842964..3843042 | 524..602 | 100 | -> | Plus |
chrX | 3844743..3844895 | 603..755 | 100 | -> | Plus |
chrX | 3844964..3845073 | 756..865 | 100 | -> | Plus |
chrX | 3845157..3845369 | 866..1078 | 100 | -> | Plus |
chrX | 3845436..3845549 | 1079..1192 | 100 | -> | Plus |
chrX | 3846095..3846291 | 1193..1389 | 100 | == | Plus |
chrX | 3846393..3846869 | 1497..1973 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33-1-RC | 1..810 | 539..1348 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33-1-RC | 1..810 | 539..1348 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33-1-RB | 1..810 | 539..1348 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33-1-RC | 1..810 | 539..1348 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33A-RB | 1..810 | 539..1348 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33-1-RB | 29..2010 | 1..1982 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33-1-RB | 29..2010 | 1..1982 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33-1-RB | 30..2011 | 1..1982 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33-1-RB | 29..2010 | 1..1982 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33A-RB | 30..2011 | 1..1982 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 3949004..3949372 | 1..369 | 100 | -> | Plus |
X | 3949481..3949713 | 370..602 | 100 | -> | Plus |
X | 3951415..3951567 | 603..755 | 100 | -> | Plus |
X | 3951636..3951745 | 756..865 | 100 | -> | Plus |
X | 3951829..3952041 | 866..1078 | 100 | -> | Plus |
X | 3952108..3952221 | 1079..1192 | 100 | -> | Plus |
X | 3952767..3953556 | 1193..1982 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 3949004..3949372 | 1..369 | 100 | -> | Plus |
X | 3949481..3949713 | 370..602 | 100 | -> | Plus |
X | 3951415..3951567 | 603..755 | 100 | -> | Plus |
X | 3951636..3951745 | 756..865 | 100 | -> | Plus |
X | 3951829..3952041 | 866..1078 | 100 | -> | Plus |
X | 3952108..3952221 | 1079..1192 | 100 | -> | Plus |
X | 3952767..3953556 | 1193..1982 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 3949004..3949372 | 1..369 | 100 | -> | Plus |
X | 3949481..3949713 | 370..602 | 100 | -> | Plus |
X | 3951415..3951567 | 603..755 | 100 | -> | Plus |
X | 3951636..3951745 | 756..865 | 100 | -> | Plus |
X | 3951829..3952041 | 866..1078 | 100 | -> | Plus |
X | 3952108..3952221 | 1079..1192 | 100 | -> | Plus |
X | 3952767..3953556 | 1193..1982 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 3843037..3843405 | 1..369 | 100 | -> | Plus |
arm_X | 3843514..3843746 | 370..602 | 100 | -> | Plus |
arm_X | 3845448..3845600 | 603..755 | 100 | -> | Plus |
arm_X | 3845669..3845778 | 756..865 | 100 | -> | Plus |
arm_X | 3845862..3846074 | 866..1078 | 100 | -> | Plus |
arm_X | 3846141..3846254 | 1079..1192 | 100 | -> | Plus |
arm_X | 3846800..3847589 | 1193..1982 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 3959734..3959843 | 756..865 | 100 | -> | Plus |
X | 3957102..3957470 | 1..369 | 100 | -> | Plus |
X | 3957579..3957811 | 370..602 | 100 | -> | Plus |
X | 3959513..3959665 | 603..755 | 100 | -> | Plus |
X | 3959927..3960139 | 866..1078 | 100 | -> | Plus |
X | 3960206..3960319 | 1079..1192 | 100 | -> | Plus |
X | 3960865..3961654 | 1193..1982 | 100 | Plus |
Translation from 538 to 1347
> LD30122.hyp MSKSLFDLPLTIEPEHELRFVGPFTRPVVTIMTLRNNSALPLVFKIKTTA PKRYCVRPNIGKIIPFRSTQVEICLQPFVYDQQEKNKHKFMVQSVLAPMD ADLSDLNKLWKDLEPEQLMDAKLKCVFEMPTAEANAENTSGGGAVGGGTG AAGGGSAGANTSSASAEALESKPKLSSEDKFKPSNLLETSESLDLLSGEI KALRECNIELRRENLHLKDQITRFRSSPAVKQVNEPYAPVLAEKQIPVFY IAVAIAAAIVSLLLGKFFL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vap-33A-PE | 269 | CG5014-PE | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap-33A-PC | 269 | CG5014-PC | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap-33A-PB | 269 | CG5014-PB | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap-33A-PA | 235 | CG5014-PA | 1..235 | 1..269 | 1148 | 87.4 | Plus |
fan-PA | 218 | CG7919-PA | 9..140 | 10..145 | 210 | 35 | Plus |
Translation from 538 to 1347
> LD30122.pep MSKSLFDLPLTIEPEHELRFVGPFTRPVVTIMTLRNNSALPLVFKIKTTA PKRYCVRPNIGKIIPFRSTQVEICLQPFVYDQQEKNKHKFMVQSVLAPMD ADLSDLNKLWKDLEPEQLMDAKLKCVFEMPTAEANAENTSGGGAVGGGTG AAGGGSAGANTSSASAEALESKPKLSSEDKFKPSNLLETSESLDLLSGEI KALRECNIELRRENLHLKDQITRFRSSPAVKQVNEPYAPVLAEKQIPVFY IAVAIAAAIVSLLLGKFFL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22260-PA | 276 | GF22260-PA | 1..257 | 1..250 | 939 | 73.9 | Plus |
Dana\GF23956-PA | 227 | GF23956-PA | 6..191 | 10..211 | 239 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18683-PA | 273 | GG18683-PA | 1..273 | 1..269 | 1127 | 85.1 | Plus |
Dere\GG14468-PA | 232 | GG14468-PA | 9..232 | 10..269 | 218 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24467-PA | 269 | GH24467-PA | 7..250 | 6..250 | 883 | 70.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vap33-PE | 269 | CG5014-PE | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap33-PC | 269 | CG5014-PC | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap33-PB | 269 | CG5014-PB | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap33-PA | 235 | CG5014-PA | 1..235 | 1..269 | 1148 | 87.4 | Plus |
fan-PA | 218 | CG7919-PA | 9..140 | 10..145 | 210 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16484-PA | 269 | GI16484-PA | 7..269 | 6..269 | 841 | 67.9 | Plus |
Dmoj\GI13153-PA | 220 | GI13153-PA | 2..115 | 10..125 | 183 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14766-PA | 263 | GL14766-PA | 1..244 | 1..250 | 914 | 72 | Plus |
Dper\GL24786-PA | 201 | GL24786-PA | 1..196 | 1..245 | 481 | 47.8 | Plus |
Dper\GL26519-PA | 249 | GL26519-PA | 1..237 | 1..267 | 170 | 24.9 | Plus |
Dper\GL25412-PA | 240 | GL25412-PA | 1..141 | 1..142 | 160 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18596-PA | 263 | GA18596-PA | 1..244 | 1..250 | 914 | 72 | Plus |
Dpse\GA28912-PA | 220 | GA28912-PA | 1..219 | 1..268 | 525 | 46.3 | Plus |
Dpse\GA28892-PA | 249 | GA28892-PA | 1..237 | 1..267 | 175 | 25.7 | Plus |
Dpse\GA28611-PA | 240 | GA28611-PA | 1..141 | 1..142 | 160 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12317-PA | 251 | GM12317-PA | 1..251 | 1..269 | 1038 | 87.7 | Plus |
Dsec\GM25016-PA | 218 | GM25016-PA | 9..190 | 10..208 | 227 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16666-PA | 235 | GD16666-PA | 1..235 | 1..269 | 1055 | 81.4 | Plus |
Dsim\GD14051-PA | 218 | GD14051-PA | 9..187 | 10..205 | 226 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16028-PA | 267 | GJ16028-PA | 7..248 | 6..250 | 859 | 69.1 | Plus |
Dvir\GJ11927-PA | 228 | GJ11927-PA | 1..123 | 1..124 | 180 | 33.3 | Plus |