Clone LD30155 Report

Search the DGRC for LD30155

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:301
Well:55
Vector:pOT2
Associated Gene/Transcriptlost-RA
Protein status:LD30155.pep: gold
Preliminary Size:2993
Sequenced Size:2693

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14648 2001-01-01 Release 2 assignment
CG14648 2001-09-19 Blastp of sequenced clone
CG14648 2003-01-01 Sim4 clustering to Release 3
growl 2008-04-29 Release 5.5 accounting
growl 2008-08-15 Release 5.9 accounting
growl 2008-12-18 5.12 accounting

Clone Sequence Records

LD30155.complete Sequence

2693 bp (2693 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058608

> LD30155.complete
GAGAACGGTAGACGTTGCTTGTGAACTGTGAACTGTGTAGCCGTAGCCTG
AGCCGGTAAAAAATTGTGAGCAGAACTAAAACACAATTGGCGAGCGATTC
GATGGAGGACCAAAGCAACGCAGCCCCCGCTGTCGCCGCGGAGAACGGCG
GAAACACCGCGCAGGAGGTGTCTTCGACAACTCAGCCCATAGAGCCCACA
AAGCGCTCGCTGCGCGTGCAGACCTGGAAAAAGATCCAAGAGGGCAAGGT
TGGCATTGGATTCAACAACATATTTAACCGAATTCCTTCGTTCGTGGGTG
CCGATAAGGCTGCTGCCTTGTTTGCCAATGAAGAGGAGTTCAAGAAAGCA
CAGCACATCAAGGTGAACATCGATCGCGTCTTGCATGAGTTTAAGGAACT
GGCATTGCTGGCCGACAAGTCCGTATACTTGCCCAGCACCCGCGAATCTT
CTGCACTGTGCCTAAAGGTAGATGTGCTGGCCGATGCCACCGAGGAGCAG
AAAAAGGAGGCTCTGCGCGTTCAAGATATTCAAAAGTTTCGCTCGGAAAT
TGGATTGGACAGCGGTCTGAAGCTGGACATCGTGGTTATTGGCTCTGTTG
TAGTGTCACGCGAGGGTTACCGCATTGGACGCGGAAATGGTTTCGCTGAT
CTGGACATCGGCCTCCTTATTGAACTGGGAGCCATTACACCGAAGACAAT
TATTGTCACAATCGTGCACGACATGCAGGTGGTGGACTCACTGCCCCCGA
ATCTATTCCAGAAGTACGATACGCCAGTTGATATCATTGCAACACCCACA
GAAATAATCAGGGTGCCAAAGCGCTTGTCTTTCCCCAATGGCGTTTACTG
GGAGCTGCTGTCCGAGCGCCGTCTAAAAATATTGCCCGTGCTGCAGCAGC
TTAAGGAAAGGGAGGAGAAGGCGGGAAAATCCATATCCCTCAAGGAGGAA
GACACCGATGTGGAGCAACATCAAAACAACAGACGCCGCCGTGGGCCTGT
GCGCCGGCGCATCCAACGAGGAAACCCAGGTCGCACCACTTCGCAGACTG
ACAACGAACAGCCGCAGGGCGAGACTGCTCAGAAACGCACTCCGCGGCGC
AAAGGTCGTTTCGTCAATCGCCGCAGACGTACAACTAAGTCTGAGGGCGA
TCAGTCTGGTGTGGAAGCAGGTGCTAAAACTGATGATCGTAAGTTACCAG
AGGCTGGCACTGATGAGCGTCGTTCAAAGAAGAACAAGAACAGTGATTTT
TGCATTAAGTTGACAAATCTGTCTCGTGATATTCGCGTCAAGGACTTAAA
GTCGGAGCTCCGCAAACGCGAATGCACTCCGATGTCAATTTCTTGGAAGG
GACACTTCGGAAAGTGTTTCCTGCACTTTGGAAACCGCAAGGGGGTTCCC
AGTACCCAGGACGACATGGACAAGGTGTTGAAGTCTCTCAACGATCTCTC
GCTCACCATTACCACTGGTGGCGAGACAGCCCCAGCTGCCGCCGCAGGGG
AGGGCGGTGAGAAAGCAGAGTCAGCTGAGACTGCAACGCCTGTGCAGACC
AAGACTATTCTCGTCAACGTAGAACTGATCCAATTTGGCGAGAAGAAAAG
TGCTAGCTCCACTGGTGCCAATGCCGGTGCAGGCGAGGATGGAAAAGCAG
ACGCGCAAAACGGAGGGGAGGCCGTAACTGTGGCAGGAGGCGACGTGGGT
GGTGCACGCATCGAAGCTGTCGACACCACCACAGTATAGTATGACTTTGC
GCTTGGCGCAGCCAATGAACGGTCGCGGCGGACTTCCGCCGACAGCGCAA
TGTTTGGAGTTCAACGAAAAAAAGTAACATTTTGTTTAGAAAAAATCGGG
AAATACCAAACAAAAAACAAATAGAAAGCGAACTCCGAACAAACACAAAG
TACACTCAAAATACACACTCACTAAATACACGCTGGCAATTACACTTGTG
CATACACTGAATATCATGTTTTGCAGCTTGTAGTTTCTTCTTCTCCGTCA
TTATTCTAACCAACAAGAAAATCAAACGCAACTCTTTCTAACGAGAACAC
AAATCATTGACGCTTTTTCTAAACAATTGCATTTGTTTTTTGCCTAAGAA
AATTAAAACGATTGCAGAAATACTCGTTCCACAAATGCAAAGTGGAACAC
CATTTCTTCTAAATAATCCTTTTACTAACTTCTTGTGACTTGTTACAATT
CTGAATTAGAACTTCTGAATATTTGTTAATTTGATTTCACACCTCAGCAA
TAAGATCGTTTTGCTGTATCTCTGTTAAGCAGTTGAGCTGCTAGTAATAG
GGCTTGAAGTTGAGTGCGTTGAAGTTGAAGTAATGTTCTAAAATGTAATA
CTAATAGGAATGCCCTATAAATGAGAAATACCGCGAGTAAGAAAAAATGA
ATTAACAAAATATTTACATGTTGCATTTGGTTAGTCTTTTCCAACTTTCA
CCGCAAACATCAATAAATTTAATAATATTTTTAACAGAAGAACAAGAAAT
GTGTGAAAGCAAGAATTATACAATGCAGAACATAATTATACAAGGCAGAA
CATAATTATTTACCCTTTTTTTATACACAAAAGGCATTACAAAAAAAAAA
TATGAAACATGAATGAAATATAACTTGAAATAAAAATTAAAAAAATCGTA
AAAATAAACTTGACCGAAAATTAAAAAAAAAAAAAAAAAAAAA

LD30155.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
growl-RA 2862 growl-RA 157..2829 1..2673 13365 100 Plus
growl.a 2546 growl.a 51..2543 181..2673 12465 100 Plus
growl.b 2565 growl.b 70..2562 181..2673 12465 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 231585..232907 1350..2672 6615 100 Plus
chr3R 27901430 chr3R 230416..231139 348..1071 3605 99.9 Plus
chr3R 27901430 chr3R 231318..231531 1138..1351 1070 100 Plus
chr3R 27901430 chr3R 228820..228999 1..180 900 100 Plus
chr3R 27901430 chr3R 230184..230358 177..351 860 99.4 Plus
chr3R 27901430 chr3R 231199..231267 1071..1139 345 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4405866..4407189 1350..2673 6620 100 Plus
3R 32079331 3R 4404697..4405420 348..1071 3605 99.9 Plus
3R 32079331 3R 4405599..4405812 1138..1351 1070 100 Plus
3R 32079331 3R 4403101..4403280 1..180 900 100 Plus
3R 32079331 3R 4404465..4404639 177..351 860 99.4 Plus
3R 32079331 3R 4405480..4405548 1071..1139 345 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4146697..4148020 1350..2673 6620 100 Plus
3R 31820162 3R 4145528..4146251 348..1071 3605 99.8 Plus
3R 31820162 3R 4146430..4146643 1138..1351 1070 100 Plus
3R 31820162 3R 4143932..4144111 1..180 900 100 Plus
3R 31820162 3R 4145296..4145470 177..351 860 99.4 Plus
3R 31820162 3R 4146311..4146379 1071..1139 345 100 Plus
Blast to na_te.dros performed 2019-03-16 02:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 2370..2633 2366..2646 152 54.4 Plus

LD30155.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:29:17 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 230188..230358 181..351 100 -> Plus
chr3R 228820..228999 1..180 100 -> Plus
chr3R 230420..231138 352..1070 100 -> Plus
chr3R 231199..231267 1071..1139 100 -> Plus
chr3R 231320..231530 1140..1350 100 -> Plus
chr3R 231586..232825 1351..2590 98 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:54 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
growl-RA 1..1638 102..1739 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:46 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
growl-RA 1..1638 102..1739 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:36:30 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
lost-RA 1..1638 102..1739 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:16 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
growl-RA 1..1638 102..1739 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:12:05 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
lost-RA 1..1638 102..1739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:49:47 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
growl-RA 53..2724 1..2672 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:46 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
growl-RA 53..2724 1..2672 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:36:30 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
lost-RA 53..2724 1..2672 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:16 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
growl-RA 53..2724 1..2672 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:12:05 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
lost-RA 26..2691 1..2666 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:17 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4403101..4403280 1..180 100 -> Plus
3R 4404469..4404639 181..351 100 -> Plus
3R 4404701..4405419 352..1070 100 -> Plus
3R 4405480..4405548 1071..1139 100 -> Plus
3R 4405601..4405811 1140..1350 100 -> Plus
3R 4405867..4407188 1351..2672 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:17 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4403101..4403280 1..180 100 -> Plus
3R 4404469..4404639 181..351 100 -> Plus
3R 4404701..4405419 352..1070 100 -> Plus
3R 4405480..4405548 1071..1139 100 -> Plus
3R 4405601..4405811 1140..1350 100 -> Plus
3R 4405867..4407188 1351..2672 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:17 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4403101..4403280 1..180 100 -> Plus
3R 4404469..4404639 181..351 100 -> Plus
3R 4404701..4405419 352..1070 100 -> Plus
3R 4405480..4405548 1071..1139 100 -> Plus
3R 4405601..4405811 1140..1350 100 -> Plus
3R 4405867..4407188 1351..2672 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:36:30 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 228823..229002 1..180 100 -> Plus
arm_3R 230191..230361 181..351 100 -> Plus
arm_3R 230423..231141 352..1070 100 -> Plus
arm_3R 231202..231270 1071..1139 100 -> Plus
arm_3R 231323..231533 1140..1350 100 -> Plus
arm_3R 231589..232910 1351..2672 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:54 Download gff for LD30155.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4146432..4146642 1140..1350 100 -> Plus
3R 4146698..4148019 1351..2672 100   Plus
3R 4145532..4146250 352..1070 100 -> Plus
3R 4146311..4146379 1071..1139 100 -> Plus
3R 4143932..4144111 1..180 100 -> Plus
3R 4145300..4145470 181..351 100 -> Plus

LD30155.pep Sequence

Translation from 101 to 1738

> LD30155.pep
MEDQSNAAPAVAAENGGNTAQEVSSTTQPIEPTKRSLRVQTWKKIQEGKV
GIGFNNIFNRIPSFVGADKAAALFANEEEFKKAQHIKVNIDRVLHEFKEL
ALLADKSVYLPSTRESSALCLKVDVLADATEEQKKEALRVQDIQKFRSEI
GLDSGLKLDIVVIGSVVVSREGYRIGRGNGFADLDIGLLIELGAITPKTI
IVTIVHDMQVVDSLPPNLFQKYDTPVDIIATPTEIIRVPKRLSFPNGVYW
ELLSERRLKILPVLQQLKEREEKAGKSISLKEEDTDVEQHQNNRRRRGPV
RRRIQRGNPGRTTSQTDNEQPQGETAQKRTPRRKGRFVNRRRRTTKSEGD
QSGVEAGAKTDDRKLPEAGTDERRSKKNKNSDFCIKLTNLSRDIRVKDLK
SELRKRECTPMSISWKGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLNDLS
LTITTGGETAPAAAAGEGGEKAESAETATPVQTKTILVNVELIQFGEKKS
ASSTGANAGAGEDGKADAQNGGEAVTVAGGDVGGARIEAVDTTTV*

LD30155.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18214-PA 555 GF18214-PA 22..555 21..545 2212 83.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12395-PA 548 GG12395-PA 1..548 1..545 2436 88.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19050-PA 554 GH19050-PA 1..554 1..545 1972 73 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
lost-PA 545 CG14648-PA 1..545 1..545 2759 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24343-PA 533 GI24343-PA 1..533 1..545 2077 77.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21466-PA 553 GL21466-PA 23..553 21..545 2048 78.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13146-PA 553 GA13146-PA 23..553 21..545 2045 78.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10754-PA 545 GM10754-PA 1..545 1..545 2797 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19729-PA 545 GD19729-PA 1..545 1..545 2798 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10429-PA 534 GJ10429-PA 1..534 1..545 2015 76.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13534-PA 561 GK13534-PA 1..561 1..545 2029 75 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25416-PA 548 GE25416-PA 1..548 1..545 2499 91.4 Plus

LD30155.hyp Sequence

Translation from 101 to 1738

> LD30155.hyp
MEDQSNAAPAVAAENGGNTAQEVSSTTQPIEPTKRSLRVQTWKKIQEGKV
GIGFNNIFNRIPSFVGADKAAALFANEEEFKKAQHIKVNIDRVLHEFKEL
ALLADKSVYLPSTRESSALCLKVDVLADATEEQKKEALRVQDIQKFRSEI
GLDSGLKLDIVVIGSVVVSREGYRIGRGNGFADLDIGLLIELGAITPKTI
IVTIVHDMQVVDSLPPNLFQKYDTPVDIIATPTEIIRVPKRLSFPNGVYW
ELLSERRLKILPVLQQLKEREEKAGKSISLKEEDTDVEQHQNNRRRRGPV
RRRIQRGNPGRTTSQTDNEQPQGETAQKRTPRRKGRFVNRRRRTTKSEGD
QSGVEAGAKTDDRKLPEAGTDERRSKKNKNSDFCIKLTNLSRDIRVKDLK
SELRKRECTPMSISWKGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLNDLS
LTITTGGETAPAAAAGEGGEKAESAETATPVQTKTILVNVELIQFGEKKS
ASSTGANAGAGEDGKADAQNGGEAVTVAGGDVGGARIEAVDTTTV*

LD30155.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
lost-PA 545 CG14648-PA 1..545 1..545 2759 100 Plus