Clone LD30157 Report

Search the DGRC for LD30157

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:301
Well:57
Vector:pOT2
Associated Gene/Transcriptmsk-RA
Protein status:LD30157.pep: validated not full length
Preliminary Size:2874
Sequenced Size:2851

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7935 2001-10-10 Blastp of sequenced clone
msk 2008-04-29 Release 5.5 accounting
msk 2008-08-15 Release 5.9 accounting
msk 2008-12-18 5.12 accounting

Clone Sequence Records

LD30157.complete Sequence

2851 bp (2851 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061378

> LD30157.complete
CCCACGTTTAGCCAGGGCGTGCTGGAGGTGCTCCTCAAGATCCTCGACCA
GTACCGAAACAGAGTCTACGTCTCACCACGCGTCCTCACTGATGTGCTCA
ACTATCTGAAGAATGCGGTTAGCCACGCCTACACCTGGAAGCTGATTAAG
CCTCACATGGTGGCTGTCATCCAGGACGTGATCTTTCCCATCATGTCGTT
TACTGACTCCGATCAGGAGCTCTGGGAAAGCGATCCCTACGAGTACATTC
GCCTTAAGTTCGATATCTTTGAGGATTATGCCACACCTGTACCGGCAGCC
CAATCTCTGCTGCATTCTATGTGCAAAAAGCGCAAGGGCATTTTGCCCAA
GGCAATGGCCACAATTATGCAGATAATTACATCGCCGAATGCGGACAACA
AACAGAAAGATGGTGCCTTGCACATGATTGGAACGCTGGCGGACGTACTG
CTGAAGAAGGCTTCGTACCGCGACCAAGTGGAGTCCATGCTGACCACCTA
CGTCTTCCCAGAATTCCAAAATCCCGCGGGCCACATGAGAGCGCGCGCGT
GCTGGGTGCTGCACTATTTCTGTGACGTTCAAATCAAGAATCCCCAAGTG
CTGGCCGAGATAATGCGTCTGACCACAAACGCCTTGCTTACCGACAAGGA
GCTGCCCGTCAAAGTGGAGGCAGCTATCGGTCTGCAGATGTTCATATCGT
CCCAGGACGAGGCGCCGCAATACGTGGAGGCACAGATCAAGGAGATCACC
AAGGAGCTGCTTACCATCATTCGAGAGACGGAGAACGAAGATCTAACAAA
CGTTATGCAAAAGATCGTGTGCACCTTCACCGAGCAATTGCTGCCCGTGG
CCACCGAGATCTGCCAGCACCTGGCCACCACCTTCAGCCAGGTCCTAGAA
TCTGAGGAGGGATCCGACGAGAAGGCCATCACGGCCATGAGTCTGCTTAA
CACTATCGAAACTCTGCTCAGTGTGATGGAAGAGCATCCTGATGTCCTGC
TTAACTTGCACCCGATCGTCATTAATGTTGTCGGACACATTTTCCAGCAC
AACATAACTGACTTCTATGAGGAAACCTTCTCCCTGGTCTACGACCTGAC
AGCCAAGGCCATTTCCCCCGAAATGTGGCAGATGCTGGAGCTCATCTATC
AGGTGTTCAAGAAGGACGGTATTGACTACTTTATCGACATTATGCCTGCT
CTGCATAACTATGTGACGGTCGACACGCCCGCTTTCCTCTCCAATCCCAA
CAGGCTGTTGGCGATTCTCGACATGTGCAAAACGATGCTTACTAGTAGCC
CTGGCGAGGATCCCGAGTGCCATGCCGCCAAACTGATGGAAGTGATTATC
TTGCAGTGCAAGGGTCAAATCGACTCAGTGATACATATGTTCGTGGAGCT
GGCTCTGTCCCGGTTAACACGTGAAGTTCAATCCTCAGAGCTGCGCACTA
TGTGCCTGCAAGTGGTAATCGCGGCACTCTACTATAATCCCCAGTTGCTG
CTGTCCATTCTGGACAAAATGTCCCAGCAAAACAACGACTCTATCAGCGC
GCACTTTATCAAGCAGTGGCTTCACGACACGGACTGTTTCCTAGGCATCC
ACGATCGCAAACTTTGCGTCCTGGGTCTGTGCACCCTCATCTCGCTGGGC
GAAGCCAAGCCCCAGGTTCTGAGCGAAGTGGCTGGAAAGATTGTGCCCGC
ACTTATTTTGCTTTTCGATGGTCTAAAACGCGCCTACGAGTCTCGTGCTC
AGGAGGAAGAGGAAGATGAGGAGGAGGAGGACGGTGACGACTGTGAGGAG
GCTCTGTCCAGTGACGAGGATGACATGGACGAAATGGCACCGGACTATCT
GGATAAATTGGCCGAATTTGCCAAAACCAAGGGCAATGAGTCGGGCTTCG
AAGTGAAAGCCGAAATCAAGGACGACGATGCTGACTCGGACGGTGACGCC
GAGGAGTCTGTGGGTGATCTGAACGAGACTGGACTGGAGTCGTTTACCAC
GCCCATCGACGATGAGGAGAACGAAAGCGCCATCGATGAGTACTGGACGT
TTAAGGAAGTTATTACTGCACTTTCTGCACAAGACCAAGCCTGGTATGCG
CTGTTGACCTCCAACCTCACACCTGAGCAAGCCAAGGCGCTGCAAGAGGT
GGTGGTGACGGCTGACCAACGCAAAGCCGCCAAGGAATCGAAGCTGATCG
AGAAGCAAGGTGGCTTCGCCTTTCCGCAGACTGCCGTGCCCACGTCGTTT
AAGTTCGGCTCCTAAGAAACTGAATTGACCAGATCACCAGACACTTGGTT
CGATTTCTGACTTGATTGTTTCTCATATTCTTTCCAAAAATAACAAAAAC
ATCAAACAAAATACATCTGGCATGCTGATGATGGCTTTGAAGGCATTCTC
TTGGTTTTCGTACACTCCGTGTACCCATGTATGCTGCGACAATCGGTCGA
TTAATCAGATTAAAAAATCGATCGGTCGAGCGGCGACGAGACCGCACTAT
ATTTATTGTAGATTTATATTTTATTTCCTATTTTGTGGCCAGGGCGGCCA
ACTAAATTATGATAACTTAAGTCCATTGTAAATCTTTGTATGTAAACGAA
ACGAAACGAAACGAAAAACAAACACGTCAGGACGAGAAGGTCTCATTAAA
TGAGATTGTGCCCACCAGCACGCCCCCGTAGAACTCCAAAAAAAAGTTGG
CATCTAGGTCAGAGAATGAGAATTCAACGCAGAGCATTTCACATACATTT
TCTTTATACACACATACACGTATATTCTGTACTAAATGAAGCGATATTTT
TGAAAAATAAAAAAAAAAAATTTTTAACGTTTGAAAAAAAAAAAAAAAAA
A

LD30157.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
msk-RA 3982 msk-RA 1148..3982 1..2835 14175 100 Plus
ldbr-RA 2006 ldbr-RA 1..81 2755..2835 405 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8110792..8111590 262..1060 3980 99.9 Plus
chr3L 24539361 chr3L 8112864..8113628 2068..2833 3780 99.9 Plus
chr3L 24539361 chr3L 8112327..8112800 1595..2068 2370 100 Plus
chr3L 24539361 chr3L 8111961..8112272 1284..1595 1560 100 Plus
chr3L 24539361 chr3L 8111652..8111876 1060..1284 1110 99.6 Plus
chr3L 24539361 chr3L 8110595..8110740 117..262 730 100 Plus
chr3L 24539361 chr3L 8110266..8110382 1..117 585 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8118744..8119542 262..1060 3995 100 Plus
3L 28110227 3L 8120814..8121581 2068..2835 3840 100 Plus
3L 28110227 3L 8120277..8120750 1595..2068 2370 100 Plus
3L 28110227 3L 8119911..8120222 1284..1595 1560 100 Plus
3L 28110227 3L 8119604..8119828 1060..1284 1125 100 Plus
3L 28110227 3L 8118547..8118692 117..262 730 100 Plus
3L 28110227 3L 8118218..8118334 1..117 585 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8111844..8112642 262..1060 3995 100 Plus
3L 28103327 3L 8113914..8114681 2068..2835 3840 100 Plus
3L 28103327 3L 8113377..8113850 1595..2068 2370 100 Plus
3L 28103327 3L 8113011..8113322 1284..1595 1560 100 Plus
3L 28103327 3L 8112704..8112928 1060..1284 1125 100 Plus
3L 28103327 3L 8111647..8111792 117..262 730 100 Plus
3L 28103327 3L 8111318..8111434 1..117 585 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:11:28 has no hits.

LD30157.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:12:18 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8110266..8110381 1..116 100 -> Plus
chr3L 8110595..8110740 117..262 100 -> Plus
chr3L 8110793..8111590 263..1060 99 -> Plus
chr3L 8111653..8111876 1061..1284 99 -> Plus
chr3L 8111962..8112272 1285..1595 100 -> Plus
chr3L 8112328..8112800 1596..2068 100 -> Plus
chr3L 8112865..8113628 2069..2833 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:10:55 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 886..3150 1..2265 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:14 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 886..3150 1..2265 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:20:20 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 886..3150 1..2265 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:11 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 886..3150 1..2265 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:29 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 886..3150 1..2265 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:14 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1148..3980 1..2833 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:14 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1148..3980 1..2833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:20:20 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1147..3979 1..2833 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:12 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1148..3980 1..2833 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:29 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1147..3979 1..2833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:18 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8118547..8118692 117..262 100 -> Plus
3L 8118218..8118333 1..116 100 -> Plus
3L 8118745..8119542 263..1060 100 -> Plus
3L 8119605..8119828 1061..1284 100 -> Plus
3L 8119912..8120222 1285..1595 100 -> Plus
3L 8120278..8120750 1596..2068 100 -> Plus
3L 8120815..8121579 2069..2833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:18 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8118547..8118692 117..262 100 -> Plus
3L 8118218..8118333 1..116 100 -> Plus
3L 8118745..8119542 263..1060 100 -> Plus
3L 8119605..8119828 1061..1284 100 -> Plus
3L 8119912..8120222 1285..1595 100 -> Plus
3L 8120278..8120750 1596..2068 100 -> Plus
3L 8120815..8121579 2069..2833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:18 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8118547..8118692 117..262 100 -> Plus
3L 8118218..8118333 1..116 100 -> Plus
3L 8118745..8119542 263..1060 100 -> Plus
3L 8119605..8119828 1061..1284 100 -> Plus
3L 8119912..8120222 1285..1595 100 -> Plus
3L 8120278..8120750 1596..2068 100 -> Plus
3L 8120815..8121579 2069..2833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:20:20 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8112705..8112928 1061..1284 100 -> Plus
arm_3L 8111318..8111433 1..116 100 -> Plus
arm_3L 8111647..8111792 117..262 100 -> Plus
arm_3L 8111845..8112642 263..1060 100 -> Plus
arm_3L 8113012..8113322 1285..1595 100 -> Plus
arm_3L 8113378..8113850 1596..2068 100 -> Plus
arm_3L 8113915..8114679 2069..2833 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:19 Download gff for LD30157.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8111845..8112642 263..1060 100 -> Plus
3L 8112705..8112928 1061..1284 100 -> Plus
3L 8113012..8113322 1285..1595 100 -> Plus
3L 8113378..8113850 1596..2068 100 -> Plus
3L 8113915..8114679 2069..2833 100   Plus
3L 8111318..8111433 1..116 100 -> Plus
3L 8111647..8111792 117..262 100 -> Plus

LD30157.hyp Sequence

Translation from 0 to 2264

> LD30157.hyp
PTFSQGVLEVLLKILDQYRNRVYVSPRVLTDVLNYLKNAVSHAYTWKLIK
PHMVAVIQDVIFPIMSFTDSDQELWESDPYEYIRLKFDIFEDYATPVPAA
QSLLHSMCKKRKGILPKAMATIMQIITSPNADNKQKDGALHMIGTLADVL
LKKASYRDQVESMLTTYVFPEFQNPAGHMRARACWVLHYFCDVQIKNPQV
LAEIMRLTTNALLTDKELPVKVEAAIGLQMFISSQDEAPQYVEAQIKEIT
KELLTIIRETENEDLTNVMQKIVCTFTEQLLPVATEICQHLATTFSQVLE
SEEGSDEKAITAMSLLNTIETLLSVMEEHPDVLLNLHPIVINVVGHIFQH
NITDFYEETFSLVYDLTAKAISPEMWQMLELIYQVFKKDGIDYFIDIMPA
LHNYVTVDTPAFLSNPNRLLAILDMCKTMLTSSPGEDPECHAAKLMEVII
LQCKGQIDSVIHMFVELALSRLTREVQSSELRTMCLQVVIAALYYNPQLL
LSILDKMSQQNNDSISAHFIKQWLHDTDCFLGIHDRKLCVLGLCTLISLG
EAKPQVLSEVAGKIVPALILLFDGLKRAYESRAQEEEEDEEEEDGDDCEE
ALSSDEDDMDEMAPDYLDKLAEFAKTKGNESGFEVKAEIKDDDADSDGDA
EESVGDLNETGLESFTTPIDDEENESAIDEYWTFKEVITALSAQDQAWYA
LLTSNLTPEQAKALQEVVVTADQRKAAKESKLIEKQGGFAFPQTAVPTSF
KFGS*

LD30157.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
msk-PA 1049 CG7935-PA 296..1049 1..754 3863 100 Plus

LD30157.pep Sequence

Translation from 156 to 2264

> LD30157.pep
MVAVIQDVIFPIMSFTDSDQELWESDPYEYIRLKFDIFEDYATPVPAAQS
LLHSMCKKRKGILPKAMATIMQIITSPNADNKQKDGALHMIGTLADVLLK
KASYRDQVESMLTTYVFPEFQNPAGHMRARACWVLHYFCDVQIKNPQVLA
EIMRLTTNALLTDKELPVKVEAAIGLQMFISSQDEAPQYVEAQIKEITKE
LLTIIRETENEDLTNVMQKIVCTFTEQLLPVATEICQHLATTFSQVLESE
EGSDEKAITAMSLLNTIETLLSVMEEHPDVLLNLHPIVINVVGHIFQHNI
TDFYEETFSLVYDLTAKAISPEMWQMLELIYQVFKKDGIDYFIDIMPALH
NYVTVDTPAFLSNPNRLLAILDMCKTMLTSSPGEDPECHAAKLMEVIILQ
CKGQIDSVIHMFVELALSRLTREVQSSELRTMCLQVVIAALYYNPQLLLS
ILDKMSQQNNDSISAHFIKQWLHDTDCFLGIHDRKLCVLGLCTLISLGEA
KPQVLSEVAGKIVPALILLFDGLKRAYESRAQEEEEDEEEEDGDDCEEAL
SSDEDDMDEMAPDYLDKLAEFAKTKGNESGFEVKAEIKDDDADSDGDAEE
SVGDLNETGLESFTTPIDDEENESAIDEYWTFKEVITALSAQDQAWYALL
TSNLTPEQAKALQEVVVTADQRKAAKESKLIEKQGGFAFPQTAVPTSFKF
GS*

LD30157.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23958-PA 1049 GF23958-PA 348..1049 1..702 3450 95.2 Plus
Dana\GF22800-PA 220 GF22800-PA 1..218 111..371 972 75.5 Plus
Dana\GF21599-PA 508 GF21599-PA 320..507 1..205 805 77.6 Plus
Dana\GF19002-PA 513 GF19002-PA 301..498 89..345 792 65 Plus
Dana\GF11087-PA 303 GF11087-PA 115..302 1..205 791 77.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14470-PA 1049 GG14470-PA 348..1049 1..702 3710 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16170-PA 1049 GH16170-PA 348..1049 1..702 3415 94.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
msk-PA 1049 CG7935-PA 348..1049 1..702 3592 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13322-PA 1049 GI13322-PA 348..1049 1..702 3426 94.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22608-PA 534 GL22608-PA 431..533 434..543 417 73 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20700-PA 1049 GA20700-PA 348..1049 1..702 3421 94.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25020-PA 1049 GM25020-PA 348..1049 1..702 3732 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14053-PA 248 GD14053-PA 1..248 455..702 1303 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12092-PA 1049 GJ12092-PA 348..1049 1..702 3433 94.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19967-PA 1051 GK19967-PA 350..1051 1..702 3418 92.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21658-PA 1049 GE21658-PA 348..1049 1..702 3726 99.3 Plus