Clone LD30288 Report

Search the DGRC for LD30288

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:302
Well:88
Vector:pOT2
Associated Gene/TranscriptCG11658-RA
Protein status:LD30288.pep: gold
Preliminary Size:2102
Sequenced Size:2015

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11658 2002-01-01 Sim4 clustering to Release 2
CG11658 2002-05-02 Blastp of sequenced clone
CG11658 2003-01-01 Sim4 clustering to Release 3
CG11658 2008-04-29 Release 5.5 accounting
CG11658 2008-08-15 Release 5.9 accounting
CG11658 2008-12-18 5.12 accounting

Clone Sequence Records

LD30288.complete Sequence

2015 bp (2015 high quality bases) assembled on 2002-05-02

GenBank Submission: AY102690

> LD30288.complete
AACGAGTGCTTAGTTTTCCTCGATTTGGGGCCCTGCGGAATTGGCAGTTC
ACTTTCGTTGGTGGCTCGAGTGCGACGTGAAGTGCGGCAGCGAAGAGCGC
TTTTCCAGGCACAGTGCGCCACTACTTGCCTGCAAGTCAGCCACAGCAAT
TTCTCGGTAATTGCGTTGCAAATTAAATCAAACGCGTTTCGTCAACCGCC
GTCCGCTTAGGCAAAAAAAAGTAAACAAACAATACAAATCTACACTCTCA
CGCGAAAAACAATAAAGCGATCGTTCGGAAATTAGTGCAACGTAGACAAA
GGCAACTCAATCCGCATCCAGATCCACAAAAGATGGCGTTCATTTCGAAA
GACTTTCGGTCGCCGGGGGAAACTTGGATCAAAACCGATGGCGGCTGGGA
GCGTTCCAAGGTGCTCGAGTGCGGCGGAAAGCGGAAGCGGCACCATTCAG
AGGGCAGCAGCAGCTACCAGGACAGCGACAGTTCGGAGGAGGAGGCGGTG
ATGCCGCCGCATTATCACATCACCATCCGGTGTACCAGAGAGATAGCCGG
GTTTAATGGTCTCAGTGAGGCTGTGAAGCGTCTGGATTTCAGGCGATCTG
TGCGGGATCGCAAGCGGTTCCACTACATATGCGCCTTCCTGCTGCTCGTG
TCCAACAAGGGTATTGCCAGTCTGCCAGGCAGTGCTCAGCGCCAGCTACT
CCAAATGGTCGAGGAGGTGGCCTCGCATGTAAATGACAGCCAGCAGCATC
CGAATGTGCTGCGCGGCCTGGCCCTGAAGCTGGAGCACATTGTCAGCCAA
GAGAACCAGAAGTGCTGGGGCAAGCCGCTGGGCAGCACGTACCTGTGGAA
GGAGCACATGGCCACCATCAAGCGCATCCAGCGCGTGGCCAGCCAGATCG
AAATCCGCGAGCCCGATCCGGAGGCCAAGCCAAAGCTGCACGAACTGCCG
GAGGAGTGTGTGCGGGAGATCATCCTGTGCATAGCCGACCATCGGGACCT
GGAGTCGGCCGCCGAGGCCTGGGAGACCATGGCCAAGCTGGTATCCGAGC
AGCGCATCTGGCGCGAACTGACACGCTTTCACTTCAACCAGCGCCAGATC
CACACCATTCTGGACCTGGACAAGTTTAAGCAGATGGGCGAGATCAAGGA
CTGGAAGCAGATCTATCATCAACTACGACGCACCTATGGCGTCAACGATG
ATTACCAGTTCGCCGAGGTGCTGGCCCTGTGCCGCTCCTGCTGCTGCCTG
TTCTGGCCGTCGGATGGACACCCGTGCATCGTCGATCAGAGTCCGGACTA
CAAGCAGCGGCTTGAGGAGGCCGGTGGTCAGTTGGCTCTGGCCCAACCAG
TTCCGCCCGCCCAGTTTCTTAAGTACTTCTCGTTGTAAGCCGGATGTTCG
GACCAAGGGAGAGAGATAGAGATAGATCGAAAGTATTTTTACGGCCCAGT
GGATAGGTTGTTTATGCGTGTGTTAAAGTTTTACCCTTGGAGAGAAGAAA
AGGAGCAGGGGAGGAGAGGAGTTGATAGTCGAGGAGCGGATCAGAAAAAG
CAAAGTGATAACGAAATCCCTAATCTATACCTACATACGTTTAAACGTAA
ATCGCCAGACTCGTTTCGATTGGTTTGCAGTTTGTCCACGGTTAAGGACG
TGGTTTCAGTTCAGTTGTTTGCCAACCAGTTGTATTACCACATCAGCAAT
CTGTGCAGGACCGAAGATTACTATTAGTTGTGTAGACATACATACATATT
TATCTATCGACTCGCGCGTGTCAGTTGCCAGGGTCCAATTCTGGGTCGCT
AATCTTTGGGGTCGGATTTAGGTATTTAGGACACGCAAAACGAACTGCCA
CAAAACGAGAATAAGCGAATATTTTTTGTCAAACTGATTATTGCAAAACG
TGTATCGAGAAACTATTTTTAATGTACACCAGTATGTATAATTACCGATT
TGTTCATTTTTTGAGACAAAACGAGAAATACACTTTTATGAATGAAAAAA
AAAAAAAAAAAAAAA

LD30288.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11658-RA 2050 CG11658-RA 54..2048 1..1995 9975 100 Plus
CG11658.b 2694 CG11658.b 54..2048 1..1995 9975 100 Plus
CG11658-RD 2130 CG11658-RD 306..2128 173..1995 9115 100 Plus
CG11658-RD 2130 CG11658-RD 50..221 1..172 860 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11690989..11692071 1994..910 5270 99.3 Minus
chr3L 24539361 chr3L 11692380..11692670 729..439 1455 100 Minus
chr3L 24539361 chr3L 11698197..11698464 440..173 1310 99.3 Minus
chr3L 24539361 chr3L 11692136..11692318 911..729 915 100 Minus
chr3L 24539361 chr3L 11699286..11699457 172..1 845 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11700090..11701175 1995..910 5430 100 Minus
3L 28110227 3L 11701482..11701772 729..439 1455 100 Minus
3L 28110227 3L 11707304..11707571 440..173 1340 100 Minus
3L 28110227 3L 11701238..11701420 911..729 915 100 Minus
3L 28110227 3L 11708392..11708563 172..1 860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11693190..11694275 1995..910 5430 100 Minus
3L 28103327 3L 11694582..11694872 729..439 1455 100 Minus
3L 28103327 3L 11700404..11700671 440..173 1340 100 Minus
3L 28103327 3L 11694338..11694520 911..729 915 100 Minus
3L 28103327 3L 11701492..11701663 172..1 860 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:11:47 has no hits.

LD30288.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:12:28 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11699286..11699457 1..172 99   Minus
chr3L 11698198..11698464 173..439 99 <- Minus
chr3L 11690989..11692069 912..1994 99 <- Minus
chr3L 11692136..11692317 730..911 100 <- Minus
chr3L 11692380..11692669 440..729 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:04 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
CG11658-RC 1..1056 333..1388 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:34 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
CG11658-RC 1..1056 333..1388 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:20:42 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
CG11658-RC 1..1056 333..1388 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:46:07 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
CG11658-RC 1..1056 333..1388 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:47 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
CG11658-RC 1..1056 333..1388 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:32:00 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
CG11658-RA 1..1994 1..1994 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:34 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
CG11658-RA 1..1994 1..1994 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:20:42 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
CG11658-RA 1..1984 11..1994 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:46:08 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
CG11658-RA 1..1994 1..1994 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:47 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
CG11658-RA 1..1984 11..1994 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:28 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11700091..11701173 912..1994 100 <- Minus
3L 11701238..11701419 730..911 100 <- Minus
3L 11701482..11701771 440..729 100 <- Minus
3L 11707305..11707571 173..439 100 <- Minus
3L 11708392..11708563 1..172 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:28 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11700091..11701173 912..1994 100 <- Minus
3L 11701238..11701419 730..911 100 <- Minus
3L 11701482..11701771 440..729 100 <- Minus
3L 11707305..11707571 173..439 100 <- Minus
3L 11708392..11708563 1..172 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:28 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11700091..11701173 912..1994 100 <- Minus
3L 11701238..11701419 730..911 100 <- Minus
3L 11701482..11701771 440..729 100 <- Minus
3L 11707305..11707571 173..439 100 <- Minus
3L 11708392..11708563 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:20:42 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11693191..11694273 912..1994 100 <- Minus
arm_3L 11694338..11694519 730..911 100 <- Minus
arm_3L 11694582..11694871 440..729 100 <- Minus
arm_3L 11700405..11700671 173..439 100 <- Minus
arm_3L 11701492..11701663 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:37 Download gff for LD30288.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11693191..11694273 912..1994 100 <- Minus
3L 11694338..11694519 730..911 100 <- Minus
3L 11694582..11694871 440..729 100 <- Minus
3L 11700405..11700671 173..439 100 <- Minus
3L 11701492..11701663 1..172 100   Minus

LD30288.pep Sequence

Translation from 332 to 1387

> LD30288.pep
MAFISKDFRSPGETWIKTDGGWERSKVLECGGKRKRHHSEGSSSYQDSDS
SEEEAVMPPHYHITIRCTREIAGFNGLSEAVKRLDFRRSVRDRKRFHYIC
AFLLLVSNKGIASLPGSAQRQLLQMVEEVASHVNDSQQHPNVLRGLALKL
EHIVSQENQKCWGKPLGSTYLWKEHMATIKRIQRVASQIEIREPDPEAKP
KLHELPEECVREIILCIADHRDLESAAEAWETMAKLVSEQRIWRELTRFH
FNQRQIHTILDLDKFKQMGEIKDWKQIYHQLRRTYGVNDDYQFAEVLALC
RSCCCLFWPSDGHPCIVDQSPDYKQRLEEAGGQLALAQPVPPAQFLKYFS
L*

LD30288.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24522-PA 390 GF24522-PA 1..390 1..351 1727 84.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13895-PA 351 GG13895-PA 1..351 1..351 1883 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16387-PA 364 GH16387-PA 1..364 1..351 1676 86.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11658-PE 351 CG11658-PE 1..351 1..351 1879 100 Plus
CG11658-PD 351 CG11658-PD 1..351 1..351 1879 100 Plus
CG11658-PC 351 CG11658-PC 1..351 1..351 1879 100 Plus
CG11658-PB 351 CG11658-PB 1..351 1..351 1879 100 Plus
CG11658-PA 351 CG11658-PA 1..351 1..351 1879 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11581-PA 360 GI11581-PA 1..360 1..351 1716 89.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16340-PA 434 GL16340-PA 116..434 37..351 1578 93.1 Plus
Dper\GL16340-PA 434 GL16340-PA 1..52 1..52 183 63.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11124-PA 355 GA11124-PA 1..355 1..351 1755 92.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24720-PA 351 GM24720-PA 1..351 1..351 1886 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12782-PA 351 GD12782-PA 1..351 1..351 1889 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11260-PA 354 GJ11260-PA 1..354 1..351 1739 91.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12401-PA 363 GK12401-PA 1..363 1..351 1550 83.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20186-PA 351 GE20186-PA 1..351 1..351 1889 100 Plus

LD30288.hyp Sequence

Translation from 332 to 1387

> LD30288.hyp
MAFISKDFRSPGETWIKTDGGWERSKVLECGGKRKRHHSEGSSSYQDSDS
SEEEAVMPPHYHITIRCTREIAGFNGLSEAVKRLDFRRSVRDRKRFHYIC
AFLLLVSNKGIASLPGSAQRQLLQMVEEVASHVNDSQQHPNVLRGLALKL
EHIVSQENQKCWGKPLGSTYLWKEHMATIKRIQRVASQIEIREPDPEAKP
KLHELPEECVREIILCIADHRDLESAAEAWETMAKLVSEQRIWRELTRFH
FNQRQIHTILDLDKFKQMGEIKDWKQIYHQLRRTYGVNDDYQFAEVLALC
RSCCCLFWPSDGHPCIVDQSPDYKQRLEEAGGQLALAQPVPPAQFLKYFS
L*

LD30288.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11658-PE 351 CG11658-PE 1..351 1..351 1879 100 Plus
CG11658-PD 351 CG11658-PD 1..351 1..351 1879 100 Plus
CG11658-PC 351 CG11658-PC 1..351 1..351 1879 100 Plus
CG11658-PB 351 CG11658-PB 1..351 1..351 1879 100 Plus
CG11658-PA 351 CG11658-PA 1..351 1..351 1879 100 Plus