Clone LD30316 Report

Search the DGRC for LD30316

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:303
Well:16
Vector:pOT2
Associated Gene/TranscriptUpf1-RA
Protein status:LD30316.pep: gold
Preliminary Size:6033
Sequenced Size:4740

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1559 2001-01-01 Release 2 assignment
CG1559 2001-10-10 Blastp of sequenced clone
CG1559 2003-01-01 Sim4 clustering to Release 3
Upf1 2008-04-29 Release 5.5 accounting
Upf1 2008-08-15 Release 5.9 accounting
Upf1 2008-12-18 5.12 accounting

Clone Sequence Records

LD30316.complete Sequence

4740 bp (4740 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061379

> LD30316.complete
ACGTATATTTATTACTGGCAAAACAGGCCGGGCAAATTTGTTGAACAAGC
AAGAAAGTTTTCGCTTTTTTTAATCCTACATTCCCCGCAATAGCGTGGGA
ATCTCGTACAGACTCAATTTAAAACACACAACAGCCACAGTTTCGAAAGA
GTGCCGAACGGCGGGCTCCCGAACACGGAAAGCGCGAAACGCACACACGA
CACCATCGCCATACCATAATCATCGCGGCCACGCTCCAAGCTTAGGAATT
TTTCAATTCCGGAAACACTGACCAAGCGATCCGTGGTCTAGGAGCAGGTA
CTATAGATCTCATCGCGATCCCTGCGGAAACGCAGCATAATCACCTTGGG
TGAGAAGAAACAACAGGCGCCATGAGCGTGGACACGTACGCGCCCAGCTC
GGCGCTCTCGTTCCTGGACATGGACGACAACGAGCTGCTTCCGGGAGCGG
ATACTCAACCCACGCAGTACGATTACCGCGACTTTACCATGCCCTCCACC
TCGCAGAGCCAGACCCAGAACGATCAGCTGGAGATTGCCCAACGCTGCTC
TGCCGGAGACTCGCATCCACGACTGGCCAGCATCACCAACGATCTGGCCG
ATCTGCAGTTCGAAGAGGAGGACGACGAGCCTGGCAGCTCGTATGTGAAG
GAGCTGCCGCCGCATGCGTGCAAGTATTGCGGCATCCATGATCCAGCCAC
GGTGGTCATGTGCAACAACTGCCGCAAATGGTTTTGCAACGGTCGTGGAA
GCACTTCCGGTTCGCACATCATCAACCATCTGGTGAGGGCCAAGCATCGC
GAGGTGACGCTCCACGGGGAAGGTCCCCTGGGCGAGACAATCCTGGAGTG
CTACTCCTGTGGTGTGCGCAACGTCTTTGTGCTGGGCTTCATTCCGGCCA
AGGCCGATTCTGTGGTCGTGCTGCTCTGCCGTCAGCCGTGTGCCGCCCAG
AATTCGCTAAAGGATATGAACTGGGACCAGGAACAGTGGAAGCCTCTAAT
TGCAGACCGCTGCTTTTTGGCCTGGCTGGTAAAGCAACCCAGCGAACAGG
GACAGCTGCGAGCTCGCCAAATCTCAGCCGCTCAGATCAACAAGCTGGAG
GAGCTATGGAAGGAGAATATTGAGGCCACGTTTCAGGATCTGGAGAAGCC
AGGCATTGACTCGGAGCCAGCACATGTGCTACTCCGCTACGAGGATGGCT
ATCAGTACGAGAAGACCTTTGGGCCGCTGGTCCGCCTTGAGGCCGAATAC
GACCAAAAACTGAAGGAGTCTGCCACGCAGGAGAACATCGAAGTACGCTG
GGACGTCGGCCTCAACAAAAAGACCATTGCCTACTTTACGCTGGCGAAGA
CCGATTCGGACATGAAGCTCATGCATGGCGACGAGCTGCGCCTGCATTAT
GTGGGCGAGCTGTACAATCCGTGGAGCGAGATCGGCCACGTTATCAAGGT
GCCGGACAATTTCGGCGATGACGTCGGCCTGGAGCTGAAATCCTCAACGA
ATGCCCCGGTTAAGTGCACCAGTAACTTTACGGTGGACTTCATCTGGAAG
TGCACGTCATTTGATCGCATGACACGTGCTCTGTGCAAATTCGCCATCGA
TCGCAATTCAGTGTCGAACTTCATCTACTCGCGCCTGTTGGGCCACGGTC
GTGCGGATTCCAACGACGAGGTGCTGTTCCGCGGCCCACAACCCAAGCTC
TTCAGTGCCCCGCATCTGCCGGATTTGAATCGCAGCCAGGTGTATGCCGT
GAAACACGCGCTTCAGCGTCCGCTCTCGCTAATCCAAGGGCCGCCTGGCA
CGGGCAAAACCGTGACCTCGGCGACCATCGTTTACCAGCTGGTCAAGCTC
CATGGTGGCACAGTGCTGGTGTGCGCTCCCAGCAACACGGCCGTGGATCA
GCTAACTGAGAAGATCCACCGAACAAACCTTAAAGTGGTGCGTGTTTGCG
CCAAGAGCCGTGAGGCCATCGATAGCCCGGTAAGCTTCCTGGCGCTGCAC
AACCAAATCCGTAACATGGAGACCAACTCGGAGCTAAAGAAGCTGCAGCA
GCTGAAAGACGAGACCGGCGAGCTGAGCTCAGCAGACGAAAAGCGATACC
GCAACCTGAAACGTGCCGCCGAGAACCAACTGCTGGAGGCTGCCGACGTT
ATCTGCTGCACATGCGTAGGCGCCGGCGATGGTCGTCTATCGCGAGTCAA
GTTCACCTCGATCCTGATCGATGAGTCTATGCAGTCGACGGAGCCGGAGT
GCATGGTGCCAGTGGTGCTGGGCGCTAAGCAGCTGATCCTCGTGGGCGAT
CACTGCCAGCTGGGACCGGTTGTTATGTGCAAGAAAGCAGCTCGTGCCGG
CCTCTCGCAAAGTTTGTTCGAGCGCCTGGTGGTTCTGGGCATCCGTCCGT
TCCGGCTGGAGGTGCAATATCGCATGCACCCCGAGCTGTCCCAGTTCCCG
TCCAACTTCTTCTACGAGGGATCGCTGCAAAACGGCGTCTGCGCGGAGGA
TCGTCGCCTTAAGCTTGATTTCCCCTGGCCACAGCCGGAGAGACCGATGT
TCTTTCTGGTAACACAGGGACAGGAGGAGATTGCCGGCTCCGGCACCTCT
TTCCTCAACCGCACAGAGGCGGCCAACGTGGAAAAGATTACGACGCGATT
CCTTAAGGCAGGCATCAAGCCGGAACAAATTGGAATCATCACGCCTTACG
AAGGTCAGCGCGCTTACCTGGTGCAGTACATGCAATACCAGGGCAGCCTG
CACTCTCGTCTATACCAGGAGATCGAGATCGCCAGTGTGGACGCGTTCCA
GGGACGTGAGAAGGACATCATTATCATGTCTTGCGTGCGATCTAACGAAC
GTCAAGGCATCGGCTTTTTGAACGACCCACGTCGCCTTAATGTTGCCCTT
ACACGGGCCAAGTTCGGGATCATCATTGTGGGCAATCCCAAAGTGCTCGC
CAAGCAGCAGCTGTGGAACCATCTGCTCAACTTCTACAAGGACCGTAAGG
TGCTCGTCGAGGGATCTCTGAATAACCTTAAGGAGTCGCTAATCCACTTC
CAGAAGCCCAAAAAGCTTGTCAACAGCATGAACATTGGGGCACACTTTAT
GTCCACCATTATTGCCGATGCCAAGGAAGTGATGGTGCCAGGCTCCATTT
ACGACCGCAGTGGCGGTTACGGCCAAGGTCGCCAAATGGTGGGACAGTCA
ATGAATGGCGGACAGTACGGTGGCAGTGGAGGTGGTCCCTACGGAAACTC
ACCCCTCGGCTACGGTACTCCCAGCTCCAATTCCATGGTGGGCTTTGGCC
TGGGCAACGGAGGCAATGGCGCGGCCGGTGGCAACAACAACTTCGGAGGG
GCTGGACCCAGTTGGGCGGCTGCCCACCTCCACCACGACTCCATTGGCTA
TATATCCAACGAGCATGGAGCAGCAGCACTGGGCAACATGCCAGTTCCGG
TTGGCATGTTCATGAACATGAGCAATATTCCGCCGCGTTTCTACAACCAG
CACCAGCAGGCGATCATGGCGGTCAAGCAGAATCGCGCCATTCAACAACA
GACGGGTAATTTCTCTCCCGGTAACTCGGGTCCTGGAGTCACTGGAGTCG
GAGTCGGACGAAGCGCCACCCCAGGCGGCAATAAGAAGACCAACAAGCTG
GGAAAATCGCGCGTAACGGGCGGTGGAACTGGCGGGGCACCGCTAACACA
AGGAAGCTCGGTATGCAATGCTGCTCCATACAGTCAGCACCCGATGCCTT
TGTCGCTGCAGATGACCCAGCCCAGCGGATTTGCTCTGTCCCAGCAGCCG
GAACTTTCACAGGACTTTGGGCAAATATCGCAGATGGACGGTTTGCTATC
CCAGGATGTTGCCTTTAACGCGTCGGGCGAGCGGAGCTTGAATCAGTTCT
CACAGCCTTATTGAGAATCCGGTTGGAGGTGCAACAACTACAAACGATAA
CAAGCAACACAAACGAAACAACAACAAACTCAACTTTGAAGTCATCATCA
AGGAGTAGCATCAGTAGGCAGCAGGAAAAAGCAGAGAGGACCATCACGGG
AACAACGACAGATGCGGGAAACAATGCGACCTAAGAACATTAGGACAAAG
CGGGACATTAAAAGATGGCAAATCGAGACGAGGCAGCGTGATAGATGGAG
ACGGATATGGCAAGATGTGGAGTTACAAAGTAATAAAGAAGACTGAGACG
GGAGAGAGATGTCGAAAGATCGAAATATCGAGAGCAAATCACTGTAGGCT
GCCAGGATGCACAGCTGCAGTTGCTGTTTCCGTAGCGCCGCGGGCCATGG
AGTCATAGCCAGGCGACATGCCATTGGCCACCGGCCATTGGCCATTGGTC
ACGAGTGCGCTCCCGAGACGGAGTTCGCCCACGGATGAGCCAATCTGCCA
GCAAGGCGCCACACAAGATGGACAACTTCTCGACACGTTTCTTTTCTCTT
TTGCCAGCCCAGGATTCGCAGCCGGAGCCTAACAAAGACGCAATCACTCC
CGCCCAGGACATGTATTCACCAAGTGGCTTATCTTCTAACCTTCTTCTGG
CCTCTAGTGCAGCAGCCAATCTTTAGCTCCTGTTTTAACATTTTCCCACC
CAAAGCGGTTTATACCGATCCCCATATATGTATGCCCACTGTTGTACATT
TTTGGACTCTTTTTTGATGCATTTGTTATCCTAACAAACACGAAAACAAA
ATCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD30316.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Upf1-RA 5203 Upf1-RA 42..4753 1..4712 23560 100 Plus
Upf1.b 5174 Upf1.b 346..4724 334..4712 21895 100 Plus
Upf1.a 4735 Upf1.a 346..4724 334..4712 21895 100 Plus
Upf1.b 5174 Upf1.b 42..347 1..306 1530 100 Plus
Upf1.a 4735 Upf1.a 42..347 1..306 1530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11792488..11795820 3872..540 16650 100 Minus
chrX 22417052 chrX 11791584..11792419 4707..3872 4165 99.9 Minus
chrX 22417052 chrX 11796174..11796479 306..1 1530 100 Minus
chrX 22417052 chrX 11795883..11796118 539..304 1180 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11901349..11904681 3872..540 16665 100 Minus
X 23542271 X 11900440..11901280 4712..3872 4205 100 Minus
X 23542271 X 11905035..11905340 306..1 1530 100 Minus
X 23542271 X 11904744..11904979 539..304 1180 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11909447..11912779 3872..540 16665 100 Minus
X 23527363 X 11908538..11909378 4712..3872 4205 100 Minus
X 23527363 X 11913133..11913438 306..1 1530 100 Minus
X 23527363 X 11912842..11913077 539..304 1180 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:47:33 has no hits.

LD30316.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:48:30 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11791611..11792418 3873..4680 99 <- Minus
chrX 11792488..11795820 540..3872 99 <- Minus
chrX 11795883..11796115 307..539 100 <- Minus
chrX 11796174..11796479 1..306 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:05 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 1..3543 372..3914 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:52:41 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 1..3543 372..3914 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:24:13 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 1..3543 372..3914 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:21:41 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 1..3543 372..3914 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:37 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 1..3543 372..3914 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:37:35 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 1..4707 1..4707 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:52:41 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 1..4707 1..4707 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:24:13 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 32..4738 1..4707 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:21:41 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 1..4707 1..4707 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:37 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 32..4738 1..4707 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:48:30 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
X 11904744..11904976 307..539 100 <- Minus
X 11905035..11905340 1..306 100   Minus
X 11900445..11901279 3873..4707 100 <- Minus
X 11901349..11904681 540..3872 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:48:30 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
X 11904744..11904976 307..539 100 <- Minus
X 11905035..11905340 1..306 100   Minus
X 11900445..11901279 3873..4707 100 <- Minus
X 11901349..11904681 540..3872 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:48:30 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
X 11904744..11904976 307..539 100 <- Minus
X 11905035..11905340 1..306 100   Minus
X 11900445..11901279 3873..4707 100 <- Minus
X 11901349..11904681 540..3872 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:24:13 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11794478..11795312 3873..4707 100 <- Minus
arm_X 11795382..11798714 540..3872 100 <- Minus
arm_X 11798777..11799009 307..539 100 <- Minus
arm_X 11799068..11799373 1..306 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:58:40 Download gff for LD30316.complete
Subject Subject Range Query Range Percent Splice Strand
X 11908543..11909377 3873..4707 100 <- Minus
X 11909447..11912779 540..3872 100 <- Minus
X 11912842..11913074 307..539 100 <- Minus
X 11913133..11913438 1..306 100   Minus

LD30316.pep Sequence

Translation from 371 to 3913

> LD30316.pep
MSVDTYAPSSALSFLDMDDNELLPGADTQPTQYDYRDFTMPSTSQSQTQN
DQLEIAQRCSAGDSHPRLASITNDLADLQFEEEDDEPGSSYVKELPPHAC
KYCGIHDPATVVMCNNCRKWFCNGRGSTSGSHIINHLVRAKHREVTLHGE
GPLGETILECYSCGVRNVFVLGFIPAKADSVVVLLCRQPCAAQNSLKDMN
WDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQINKLEELWKENI
EATFQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKES
ATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELYNP
WSEIGHVIKVPDNFGDDVGLELKSSTNAPVKCTSNFTVDFIWKCTSFDRM
TRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFRGPQPKLFSAPHLP
DLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLV
CAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNME
TNSELKKLQQLKDETGELSSADEKRYRNLKRAAENQLLEAADVICCTCVG
AGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPV
VMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEG
SLQNGVCAEDRRLKLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEA
ANVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQE
IEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGI
IIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKPKKLV
NSMNIGAHFMSTIIADAKEVMVPGSIYDRSGGYGQGRQMVGQSMNGGQYG
GSGGGPYGNSPLGYGTPSSNSMVGFGLGNGGNGAAGGNNNFGGAGPSWAA
AHLHHDSIGYISNEHGAAALGNMPVPVGMFMNMSNIPPRFYNQHQQAIMA
VKQNRAIQQQTGNFSPGNSGPGVTGVGVGRSATPGGNKKTNKLGKSRVTG
GGTGGAPLTQGSSVCNAAPYSQHPMPLSLQMTQPSGFALSQQPELSQDFG
QISQMDGLLSQDVAFNASGERSLNQFSQPY*

LD30316.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21587-PA 1180 GF21587-PA 1..1180 1..1180 5569 88.3 Plus
Dana\GF10480-PA 1728 GF10480-PA 1145..1699 385..877 424 27.9 Plus
Dana\GF24211-PA 1191 GF24211-PA 686..1157 433..871 418 30.1 Plus
Dana\GF11149-PA 1335 GF11149-PA 616..1044 453..879 412 31.2 Plus
Dana\GF11436-PA 818 GF11436-PA 309..741 453..869 402 32.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18821-PA 1186 GG18821-PA 1..1186 1..1180 5735 92.8 Plus
Dere\GG14918-PA 1681 GG14918-PA 1196..1680 464..905 423 29.7 Plus
Dere\GG20658-PA 811 GG20658-PA 309..726 453..859 417 31.4 Plus
Dere\GG22453-PA 1295 GG22453-PA 641..1048 470..879 417 31.1 Plus
Dere\GG15143-PA 1264 GG15143-PA 805..1232 470..871 397 30.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11976-PA 1276 GH11976-PA 1..1276 1..1180 5182 79.9 Plus
Dgri\GH22948-PA 1271 GH22948-PA 635..1045 470..879 426 31.4 Plus
Dgri\GH15286-PA 1706 GH15286-PA 1202..1677 452..877 426 29.8 Plus
Dgri\GH21048-PA 1621 GH21048-PA 231..653 451..861 418 31 Plus
Dgri\GH21007-PA 833 GH21007-PA 257..718 442..875 411 30.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Upf1-PB 1180 CG1559-PB 1..1180 1..1180 6209 100 Plus
Upf1-PA 1180 CG1559-PA 1..1180 1..1180 6209 100 Plus
CG7504-PC 1417 CG7504-PC 903..1416 440..905 428 29.9 Plus
CG7504-PB 1676 CG7504-PB 1162..1675 440..905 428 29.9 Plus
CG6701-PD 1333 CG6701-PD 576..1041 423..879 405 30 Plus
CG6701-PC 1333 CG6701-PC 576..1041 423..879 405 30 Plus
CG6701-PB 1333 CG6701-PB 576..1041 423..879 405 30 Plus
CG6701-PE 1333 CG6701-PE 576..1041 423..879 405 30 Plus
CG6967-PD 764 CG6967-PD 251..679 453..870 398 30.4 Plus
CG6967-PC 764 CG6967-PC 251..679 453..870 398 30.4 Plus
CG6204-PA 903 CG6204-PA 437..895 442..880 395 29.4 Plus
armi-PC 1154 CG11513-PC 689..1113 473..871 380 29.4 Plus
armi-PD 1188 CG11513-PD 723..1147 473..871 380 29.4 Plus
armi-PB 1188 CG11513-PB 723..1147 473..871 380 29.4 Plus
CG2990-PC 1099 CG2990-PC 630..1072 446..875 336 27.1 Plus
CG2990-PB 1100 CG2990-PB 631..1073 446..875 336 27.1 Plus
CG9425-PD 2103 CG9425-PD 804..1461 447..1146 284 23.6 Plus
CG9425-PC 2103 CG9425-PC 804..1461 447..1146 284 23.6 Plus
CG9425-PB 2103 CG9425-PB 804..1461 447..1146 284 23.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14718-PA 1187 GI14718-PA 1..1187 1..1180 5370 85.5 Plus
Dmoj\GI18439-PA 1312 GI18439-PA 640..1050 470..879 457 32.1 Plus
Dmoj\GI11996-PA 1583 GI11996-PA 1095..1564 468..891 427 30.2 Plus
Dmoj\GI12382-PA 1175 GI12382-PA 687..1136 452..871 407 30.6 Plus
Dmoj\GI18513-PA 636 GI18513-PA 200..621 453..869 399 30.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20400-PA 879 GL20400-PA 1..879 331..1180 3666 79.8 Plus
Dper\GL20399-PA 209 GL20399-PA 1..182 1..182 902 89.6 Plus
Dper\GL11520-PA 765 GL11520-PA 293..684 470..859 391 31.8 Plus
Dper\GL20085-PA 1303 GL20085-PA 641..1052 470..879 391 29.9 Plus
Dper\GL26137-PA 1255 GL26137-PA 787..1212 470..871 360 28.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29178-PA 1209 GA29178-PA 1..1209 1..1180 5359 83 Plus
Dpse\GA20398-PA 1841 GA20398-PA 1331..1825 447..891 430 30.4 Plus
Dpse\GA24926-PA 1296 GA24926-PA 641..1052 470..879 389 30.3 Plus
Dpse\GA19992-PA 765 GA19992-PA 293..684 470..859 384 31 Plus
Dpse\GA27879-PA 1017 GA27879-PA 549..974 470..871 362 28.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13241-PA 1180 GM13241-PA 1..1180 1..1180 6212 97.2 Plus
Dsec\GM24969-PA 1405 GM24969-PA 891..1404 440..905 449 30.2 Plus
Dsec\GM20239-PA 1321 GM20239-PA 635..1042 470..879 413 30.3 Plus
Dsec\GM26572-PA 906 GM26572-PA 440..899 442..881 410 29.6 Plus
Dsec\GM21754-PA 826 GM21754-PA 312..729 453..859 385 31.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24645-PA 1180 GD24645-PA 1..1180 1..1180 6211 97 Plus
Dsim\GD13018-PA 1408 GD13018-PA 894..1407 440..905 436 29.7 Plus
Dsim\GD25725-PA 1316 GD25725-PA 641..1048 470..879 418 30.3 Plus
Dsim\GD11245-PA 787 GD11245-PA 273..690 453..859 379 30.4 Plus
Dsim\GD13767-PA 859 GD13767-PA 403..827 473..871 378 29.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16782-PA 1219 GJ16782-PA 1..965 1..953 4790 92.6 Plus
Dvir\GJ21523-PA 1307 GJ21523-PA 636..1046 470..879 442 31.1 Plus
Dvir\GJ12221-PA 1858 GJ12221-PA 1370..1851 468..901 437 29.2 Plus
Dvir\GJ21617-PA 880 GJ21617-PA 273..732 441..870 408 30.7 Plus
Dvir\GJ12271-PA 1180 GJ12271-PA 718..1145 470..871 406 31.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25498-PA 1208 GK25498-PA 1..1208 1..1180 5225 82.9 Plus
Dwil\GK19527-PA 1369 GK19527-PA 632..1064 453..879 430 31.4 Plus
Dwil\GK19858-PA 1890 GK19858-PA 1405..1887 468..907 428 29.6 Plus
Dwil\GK17867-PA 784 GK17867-PA 316..731 463..870 402 31.2 Plus
Dwil\GK18288-PA 1051 GK18288-PA 555..1006 447..871 386 28.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17585-PA 1187 GE17585-PA 1..1187 1..1180 5782 93.5 Plus
Dyak\GE20371-PA 1699 GE20371-PA 1214..1688 464..891 433 29.6 Plus
Dyak\GE13324-PA 1350 GE13324-PA 627..1055 453..879 430 30.8 Plus
Dyak\GE21367-PA 1179 GE21367-PA 720..1147 470..871 416 30.5 Plus
Dyak\GE11643-PA 833 GE11643-PA 317..739 453..859 405 32.1 Plus

LD30316.hyp Sequence

Translation from 371 to 3913

> LD30316.hyp
MSVDTYAPSSALSFLDMDDNELLPGADTQPTQYDYRDFTMPSTSQSQTQN
DQLEIAQRCSAGDSHPRLASITNDLADLQFEEEDDEPGSSYVKELPPHAC
KYCGIHDPATVVMCNNCRKWFCNGRGSTSGSHIINHLVRAKHREVTLHGE
GPLGETILECYSCGVRNVFVLGFIPAKADSVVVLLCRQPCAAQNSLKDMN
WDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQINKLEELWKENI
EATFQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKES
ATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELYNP
WSEIGHVIKVPDNFGDDVGLELKSSTNAPVKCTSNFTVDFIWKCTSFDRM
TRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFRGPQPKLFSAPHLP
DLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLV
CAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNME
TNSELKKLQQLKDETGELSSADEKRYRNLKRAAENQLLEAADVICCTCVG
AGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPV
VMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEG
SLQNGVCAEDRRLKLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEA
ANVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQE
IEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGI
IIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKPKKLV
NSMNIGAHFMSTIIADAKEVMVPGSIYDRSGGYGQGRQMVGQSMNGGQYG
GSGGGPYGNSPLGYGTPSSNSMVGFGLGNGGNGAAGGNNNFGGAGPSWAA
AHLHHDSIGYISNEHGAAALGNMPVPVGMFMNMSNIPPRFYNQHQQAIMA
VKQNRAIQQQTGNFSPGNSGPGVTGVGVGRSATPGGNKKTNKLGKSRVTG
GGTGGAPLTQGSSVCNAAPYSQHPMPLSLQMTQPSGFALSQQPELSQDFG
QISQMDGLLSQDVAFNASGERSLNQFSQPY*

LD30316.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Upf1-PB 1180 CG1559-PB 1..1180 1..1180 6209 100 Plus
Upf1-PA 1180 CG1559-PA 1..1180 1..1180 6209 100 Plus
CG7504-PC 1417 CG7504-PC 903..1416 440..905 428 29.9 Plus
CG7504-PB 1676 CG7504-PB 1162..1675 440..905 428 29.9 Plus
CG6701-PD 1333 CG6701-PD 576..1041 423..879 405 30 Plus