Clone LD30318 Report

Search the DGRC for LD30318

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:303
Well:18
Vector:pOT2
Associated Gene/TranscriptCG4164-RA
Protein status:LD30318.pep: gold
Preliminary Size:1684
Sequenced Size:1483

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4164 2001-01-01 Release 2 assignment
CG4164 2001-07-04 Blastp of sequenced clone
CG4164 2003-01-01 Sim4 clustering to Release 3
CG4164 2008-04-29 Release 5.5 accounting
CG4164 2008-08-15 Release 5.9 accounting
CG4164 2008-12-18 5.12 accounting

Clone Sequence Records

LD30318.complete Sequence

1483 bp (1483 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051778

> LD30318.complete
CACACACACAAACAAAGCTGCCAGCGGCGACAACTACAATTTTTTTACAC
TTTTGCCAGCATTTAAAATCGTATTTCGAATCAGCTGGTTAAAAAGAATG
AATTGCTGAATCAAACAGGATCAAAAACGAAATGCAGCTTATCAAGTGCT
TGGTTATAATTCAGCTGTCCCTCTTGCTGGTGGAGGAGTCATTTGCCGGC
CGGGACTTCTACAAAATACTGAACGTAAAGAAAAACGCCAACACGAACGA
AGTGAAGAAGGCGTATCGCCGTTTGGCCAAGGAGCTGCATCCGGATAAGA
ACAAGGACGACCCGGATGCCTCCACAAAGTTCCAGGACCTGGGAGCGGCC
TACGAAGTCCTCTCCAATCCGGACAAACGGAAGACCTACGACCGCTGCGG
CGAGGAATGCCTCAAGAAGGAGGGCATGATGGATCACGGTGGTGATCCGT
TCTCTAGCTTCTTTGGGGACTTCGGCTTTCACTTCGGTGGTGATGGCCAG
CAGCAAGATGCTCCGCGAGGCGCCGATATCGTAATGGACTTGTACGTTTC
CCTGGAGGAGCTATACTCCGGAAACTTTGTGGAAATTGTGAGGAACAAGC
CTGTAACGAAACCCGCCTCAGGCACCAGGAAATGCAACTGCCGCCAGGAG
ATGGTCACCCGGAACCTTGGACCCGGGCGCTTCCAGATGATCCAACAGAC
GGTGTGCGACGAGTGTCCCAACGTGAAGCTAGTCAACGAGGAGCGCACAT
TGGAGATCGAGGTGGAACAGGGCATGGTCGACGGCCAAGAGACGAGGTTC
GTGGCCGAGGGGGAGCCACATATCGATGGGGAGCCCGGCGACCTCATTGT
GCGGGTTCAACAAATGCCGCATCCGCGATTCCTGCGCAAGAATGATGATC
TGTACACGAACGTGACCATCAGTCTGCAGGATGCCCTTGTCGGCTTCTCC
ATGGAGATCAAGCACCTTGATGGACACCTGGTGCCCGTCACGAGAGAGAA
GGTAACGTGGCCCGGCGCTAGAATCCGCAAGAAGGGCGAGGGCATGCCCA
ACTTTGAGAACAACAACCTCACCGGCAACCTGTACATCACCTTCGATGTG
GAGTTCCCCAAGAAGGATCTTACGGAGGAGGACAAGGAAGCGCTCAAGAA
AATACTCGACCAATCCTCCATCAATCGCATATACAATGGACTGTGAATAC
CCATGTTTCATCCCCAATAAAAGTGCTCGCCGGCTGTACTCTAGTTTTTA
AATGCCTAACTAACAGGGCGACTTTGATTTGGGAACGCCCCTAATTCAAG
AGATGACTTTGTTCAAAAAAGTTGTGCGAAAACAATTTAATTTTAGTTTA
GAATTTTGTAAAATAGCAAAAGTGTAATGAGAGGGAACTATTAAGGCGGT
TCCTGCCGACAAAAAGGAATTGCAACAAAAACCAACCCCCACAAAATAAA
GCGGATTTAAATTATAAAAAAAAAAAAAAAAAA

LD30318.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164.b 1582 CG4164.b 58..1523 1..1466 7330 100 Plus
CG4164-RA 1522 CG4164-RA 58..1522 1..1465 7325 100 Plus
CG4164.a 519 CG4164.a 39..491 1014..1466 2235 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 453170..454309 1..1140 5700 100 Plus
chr2L 23010047 chr2L 454367..454693 1139..1465 1635 100 Plus
chr2L 23010047 chr2L 455026..455352 1139..1465 1635 100 Plus
chr2L 23010047 chr2L 454842..454968 1014..1140 605 98.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 453131..454270 1..1140 5700 100 Plus
2L 23513712 2L 454328..454655 1139..1466 1640 100 Plus
2L 23513712 2L 454987..455314 1139..1466 1640 100 Plus
2L 23513712 2L 454803..454929 1014..1140 605 98.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 453131..454270 1..1140 5700 100 Plus
2L 23513712 2L 454987..455314 1139..1466 1640 100 Plus
2L 23513712 2L 454328..454655 1139..1466 1640 100 Plus
2L 23513712 2L 454803..454929 1014..1140 605 98.4 Plus
Blast to na_te.dros performed 2019-03-16 11:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 1348..1483 592..729 126 57.6 Plus

LD30318.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:41:17 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 453170..454309 1..1140 100 -> Plus
chr2L 454369..454693 1141..1465 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:06 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 1..1065 132..1196 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:59 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 1..1065 132..1196 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:37:38 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 1..1065 132..1196 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:51:35 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 1..1065 132..1196 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:48 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 1..1065 132..1196 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:16:10 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 21..1485 1..1465 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:58 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 21..1485 1..1465 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:37:38 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 24..1488 1..1465 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:51:35 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 21..1485 1..1465 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:48 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 24..1488 1..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:41:17 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
2L 453131..454270 1..1140 100 -> Plus
2L 454330..454654 1141..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:41:17 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
2L 453131..454270 1..1140 100 -> Plus
2L 454330..454654 1141..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:41:17 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
2L 453131..454270 1..1140 100 -> Plus
2L 454330..454654 1141..1465 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:37:38 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 453131..454270 1..1140 100 -> Plus
arm_2L 454330..454654 1141..1465 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:03 Download gff for LD30318.complete
Subject Subject Range Query Range Percent Splice Strand
2L 453131..454270 1..1140 100 -> Plus
2L 454330..454654 1141..1465 100   Plus

LD30318.hyp Sequence

Translation from 131 to 1195

> LD30318.hyp
MQLIKCLVIIQLSLLLVEESFAGRDFYKILNVKKNANTNEVKKAYRRLAK
ELHPDKNKDDPDASTKFQDLGAAYEVLSNPDKRKTYDRCGEECLKKEGMM
DHGGDPFSSFFGDFGFHFGGDGQQQDAPRGADIVMDLYVSLEELYSGNFV
EIVRNKPVTKPASGTRKCNCRQEMVTRNLGPGRFQMIQQTVCDECPNVKL
VNEERTLEIEVEQGMVDGQETRFVAEGEPHIDGEPGDLIVRVQQMPHPRF
LRKNDDLYTNVTISLQDALVGFSMEIKHLDGHLVPVTREKVTWPGARIRK
KGEGMPNFENNNLTGNLYITFDVEFPKKDLTEEDKEALKKILDQSSINRI
YNGL*

LD30318.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-PA 354 CG4164-PA 1..354 1..354 1870 100 Plus
Droj2-PE 403 CG8863-PE 7..336 26..327 445 36.5 Plus
Droj2-PD 403 CG8863-PD 7..336 26..327 445 36.5 Plus
Droj2-PC 403 CG8863-PC 7..336 26..327 445 36.5 Plus
Droj2-PB 403 CG8863-PB 7..336 26..327 445 36.5 Plus

LD30318.pep Sequence

Translation from 131 to 1195

> LD30318.pep
MQLIKCLVIIQLSLLLVEESFAGRDFYKILNVKKNANTNEVKKAYRRLAK
ELHPDKNKDDPDASTKFQDLGAAYEVLSNPDKRKTYDRCGEECLKKEGMM
DHGGDPFSSFFGDFGFHFGGDGQQQDAPRGADIVMDLYVSLEELYSGNFV
EIVRNKPVTKPASGTRKCNCRQEMVTRNLGPGRFQMIQQTVCDECPNVKL
VNEERTLEIEVEQGMVDGQETRFVAEGEPHIDGEPGDLIVRVQQMPHPRF
LRKNDDLYTNVTISLQDALVGFSMEIKHLDGHLVPVTREKVTWPGARIRK
KGEGMPNFENNNLTGNLYITFDVEFPKKDLTEEDKEALKKILDQSSINRI
YNGL*

LD30318.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20662-PA 355 GF20662-PA 1..355 1..354 1704 92.4 Plus
Dana\GF17599-PA 403 GF17599-PA 7..336 26..327 372 34.9 Plus
Dana\GF15647-PA 391 GF15647-PA 5..339 25..338 371 33.2 Plus
Dana\GF15175-PA 346 GF15175-PA 2..346 23..342 351 28.2 Plus
Dana\GF19555-PA 334 GF19555-PA 2..334 23..352 315 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24722-PA 354 GG24722-PA 1..354 1..354 1881 99.2 Plus
Dere\GG19654-PA 403 GG19654-PA 7..335 26..326 404 35.9 Plus
Dere\GG10228-PA 389 GG10228-PA 5..339 25..338 386 33.9 Plus
Dere\GG24779-PA 350 GG24779-PA 2..350 23..342 339 27.7 Plus
Dere\GG18918-PA 332 GG18918-PA 3..315 24..326 310 27.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11226-PA 355 GH11226-PA 1..355 1..354 1627 89 Plus
Dgri\GH11414-PA 181 GH11414-PA 1..181 174..354 910 92.8 Plus
Dgri\GH10346-PA 397 GH10346-PA 5..333 25..331 365 33 Plus
Dgri\GH19043-PA 405 GH19043-PA 7..337 26..326 365 34.5 Plus
Dgri\GH11404-PA 346 GH11404-PA 2..346 23..342 346 28.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
shv-PA 354 CG4164-PA 1..354 1..354 1870 100 Plus
Droj2-PE 403 CG8863-PE 7..336 26..327 445 36.5 Plus
Droj2-PD 403 CG8863-PD 7..336 26..327 445 36.5 Plus
Droj2-PC 403 CG8863-PC 7..336 26..327 445 36.5 Plus
Droj2-PB 403 CG8863-PB 7..336 26..327 445 36.5 Plus
Droj2-PA 403 CG8863-PA 7..336 26..327 445 36.5 Plus
DnaJ-H-PA 389 CG9828-PA 5..339 25..338 381 33.3 Plus
DnaJ-H-PB 389 CG9828-PB 5..339 25..338 381 33.3 Plus
DnaJ-H-PC 440 CG9828-PC 5..339 25..338 381 33.3 Plus
CG5001-PC 346 CG5001-PC 2..346 23..342 359 28.5 Plus
CG5001-PD 350 CG5001-PD 2..350 23..342 355 28.2 Plus
CG5001-PA 350 CG5001-PA 2..350 23..342 355 28.2 Plus
CG5001-PB 350 CG5001-PB 2..350 23..342 355 28.2 Plus
DnaJ-1-PA 334 CG10578-PA 2..317 23..326 329 30 Plus
DnaJ-1-PB 334 CG10578-PB 2..317 23..326 329 30 Plus
CG2887-PA 342 CG2887-PA 3..340 24..342 287 27.4 Plus
l(2)tid-PE 445 CG5504-PE 51..416 11..338 248 26.7 Plus
l(2)tid-PA 447 CG5504-PA 51..416 11..338 248 26.7 Plus
l(2)tid-PC 507 CG5504-PC 51..416 11..338 248 26.7 Plus
l(2)tid-PD 514 CG5504-PD 51..416 11..338 248 26.7 Plus
l(2)tid-PB 520 CG5504-PB 51..416 11..338 248 26.7 Plus
CG7130-PA 128 CG7130-PA 2..73 23..95 201 52.1 Plus
mrj-PA 259 CG8448-PA 3..103 25..118 197 46.5 Plus
mrj-PC 259 CG8448-PC 3..103 25..118 197 46.5 Plus
mrj-PB 259 CG8448-PB 3..103 25..118 197 46.5 Plus
mrj-PD 259 CG8448-PD 3..103 25..118 197 46.5 Plus
CG12020-PA 366 CG12020-PA 7..353 25..341 195 24.5 Plus
P58IPK-PA 498 CG8286-PA 395..497 24..118 184 43.3 Plus
mrj-PG 346 CG8448-PG 3..66 25..87 180 56.2 Plus
mrj-PH 346 CG8448-PH 3..66 25..87 180 56.2 Plus
mrj-PE 346 CG8448-PE 3..66 25..87 180 56.2 Plus
CG3061-PA 370 CG3061-PA 105..213 24..146 170 37.4 Plus
Csp-PA 223 CG6395-PA 12..82 20..90 168 43.7 Plus
Csp-PC 228 CG6395-PC 12..82 20..90 168 43.7 Plus
Csp-PE 244 CG6395-PE 12..82 20..90 168 43.7 Plus
Csp-PD 244 CG6395-PD 12..82 20..90 168 43.7 Plus
Csp-PF 249 CG6395-PF 12..82 20..90 168 43.7 Plus
Csp-PB 249 CG6395-PB 12..82 20..90 168 43.7 Plus
CG2790-PA 540 CG2790-PA 2..74 24..95 158 43.8 Plus
CG40178-PC 780 CG40178-PC 10..94 3..90 155 42 Plus
CG40178-PA 780 CG40178-PA 10..94 3..90 155 42 Plus
CG40178-PB 780 CG40178-PB 10..94 3..90 155 42 Plus
CG17187-PA 299 CG17187-PA 1..73 16..88 153 35.6 Plus
jdp-PC 170 CG2239-PC 17..101 25..104 150 36.5 Plus
jdp-PB 182 CG2239-PB 17..101 25..104 150 36.5 Plus
jdp-PA 195 CG2239-PA 17..101 25..104 150 36.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21690-PA 355 GI21690-PA 1..355 1..354 1613 91 Plus
Dmoj\GI24337-PA 404 GI24337-PA 7..336 26..326 377 35.8 Plus
Dmoj\Tes40-PA 380 GI21193-PA 5..329 25..337 354 32.9 Plus
Dmoj\GI14539-PA 347 GI14539-PA 2..347 23..342 330 27.4 Plus
Dmoj\GI15199-PA 325 GI15199-PA 2..307 23..326 324 29.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18879-PA 355 GL18879-PA 1..355 1..354 1598 89.3 Plus
Dper\GL24472-PA 404 GL24472-PA 7..336 26..326 387 36.4 Plus
Dper\GL24772-PA 392 GL24772-PA 5..331 25..331 370 34.6 Plus
Dper\GL15626-PA 318 GL15626-PA 2..309 23..306 280 27.3 Plus
Dper\GL25452-PA 129 GL25452-PA 2..75 23..97 210 52 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17999-PA 355 GA17999-PA 1..355 1..354 1603 89.6 Plus
Dpse\GA21376-PA 404 GA21376-PA 7..336 26..326 387 36.4 Plus
Dpse\GA22062-PA 392 GA22062-PA 5..331 25..331 370 34.6 Plus
Dpse\GA18584-PA 346 GA18584-PA 2..346 23..342 345 28.2 Plus
Dpse\GA24322-PA 525 GA24322-PA 82..441 23..343 216 23.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16745-PA 354 GM16745-PA 1..354 1..354 1892 99.7 Plus
Dsec\GM25845-PA 389 GM25845-PA 5..339 25..338 378 33 Plus
Dsec\GM16806-PA 350 GM16806-PA 2..350 23..342 343 27.9 Plus
Dsec\DnaJ-1-PA 337 GM13903-PA 2..320 23..326 329 30 Plus
Dsec\GM24106-PA 382 GM24106-PA 7..315 26..327 316 34.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23027-PA 255 GD23027-PA 1..255 100..354 1367 99.6 Plus
Dsim\GD18906-PA 403 GD18906-PA 7..336 26..327 381 34.6 Plus
Dsim\GD22085-PA 389 GD22085-PA 5..339 25..338 380 33 Plus
Dsim\GD23083-PA 346 GD23083-PA 2..346 23..342 348 28.2 Plus
Dsim\DnaJ-1-PA 352 GD13179-PA 2..335 23..326 313 28.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17778-PA 355 GJ17778-PA 1..355 1..354 1620 91.8 Plus
Dvir\GJ10994-PA 393 GJ10994-PA 5..331 25..331 383 34.9 Plus
Dvir\GJ10422-PA 403 GJ10422-PA 7..335 26..326 378 34.7 Plus
Dvir\GJ16971-PA 347 GJ16971-PA 2..347 23..342 338 28.2 Plus
Dvir\GJ11949-PA 351 GJ11949-PA 2..334 23..326 332 31 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24395-PA 360 GK24395-PA 1..360 1..354 1627 89.2 Plus
Dwil\GK14806-PA 396 GK14806-PA 5..331 25..331 396 33.8 Plus
Dwil\GK13941-PA 403 GK13941-PA 7..335 26..326 378 34.7 Plus
Dwil\GK15183-PA 346 GK15183-PA 2..346 23..342 350 28 Plus
Dwil\GK10421-PA 316 GK10421-PA 2..299 23..326 328 29.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16847-PA 354 GE16847-PA 1..354 1..354 1876 98.6 Plus
Dyak\GE11908-PA 389 GE11908-PA 5..339 25..338 379 33.9 Plus
Dyak\GE26270-PA 403 GE26270-PA 7..335 26..326 378 34.7 Plus
Dyak\GE17451-PA 350 GE17451-PA 2..350 23..342 339 27.7 Plus
Dyak\DnaJ-1-PA 351 GE20542-PA 2..334 23..326 301 28.1 Plus