Clone LD30408 Report

Search the DGRC for LD30408

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:304
Well:8
Vector:pOT2
Associated Gene/TranscriptCG8617-RA
Protein status:LD30408.pep: gold
Preliminary Size:1623
Sequenced Size:1334

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8617 2001-01-01 Release 2 assignment
CG8617 2001-07-04 Blastp of sequenced clone
CG8617 2003-01-01 Sim4 clustering to Release 3
CG8617 2008-04-29 Release 5.5 accounting
CG8617 2008-08-15 Release 5.9 accounting
CG8617 2008-12-18 5.12 accounting

Clone Sequence Records

LD30408.complete Sequence

1334 bp (1334 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051779

> LD30408.complete
TGGAAGCAAATATCGATGACAGTCTTTATTTATATATTTCCTAATCAATA
TACCTGATATCAACAACTGATGCACAAAACACACCGTCTCACCACCGACA
GCCAGTACATGGAGGTCGAAGGCTTGCTGCAGGCCATGGACATGCCCACC
AGCCACGACCCGGAGGCGGAACTGGAACCGGAGTCCACGTCGCTGTGCCG
CCTGAGCCGCTACAACGTGACCAACCTGTACGACGGGCCGGCGGGCGGGG
GTTCCTCATTGAGCTCGGGCCGCCAGCGTTGCTACACAATGCCGCATGTG
CCACCGCCAGCGCCGCCCTCCACGCCCACTCTGCTGACCAGCGGGTGCGG
CGGCAGCAGCAACTCCGTATCCGTCTCCATCTCGCCCACCTGCTCCGCTG
GAAGCCATCCCTTGGATAGCCAAAGTTTGAGCCAGAGCCCCTTGAACCAC
TTCATCTACGTAAAGAATGGCAAGAACCTGCGTCGCGAATCGCGCTGCGT
CGACTCGGAGCTGTCAAAGTTATTCAACGTGGTGTCCATCACAAACCGGC
TGACGGCTATTAAGAACCGCAGCAATTCCATTTCGAATTCCAGTGGAATA
CTCAATGCCTCGCGCACCATATCGAAGTTAAACGGGGCGACGGCCACCAA
GATCTTTAAGATTCATCGGGATCCGAAGGAATTTCTGCGCGAAACGGACG
AGGATTCCGTGTCTGCGCCGGAGTACGACGAGGAGGAGGAGGACACGCGC
TTCCGTTTCTTTCGGCGTGCGCGCTTCTCGAGGAGGTACAGTACCGCACG
ATCCGGCCGGAAATTTGCGCGAAAGTTCGCCCGATTTGAGCATCATGAGC
GCATGGAAACCATCGTGGATAGTTTCGATGCAGCAATGAGCTTCAATGAT
GCAGACACCTGAGAGGCGGAGGCCACGACGAGGACGACGACGACAGCAAC
AGTTGAGAATGAGGCATGGCAGATGGTCGGCCAACCAATGTGATGAATGT
GAATTTCAACTAAATTATTTTAATTACTACAAACTACTATTATTACGATT
ATTATTACCGATTACCGAACTGTTCTCTCCATACGTTTAGTTTCCTTCTA
CGCCGATTGCCGTGGCCTTCGAGATCCCAGCACCACTCCTGCATTTGATC
GGGTTTGGTGGCGGATCGCGGACGCAGCGCATGGCACGCATTTAGTTTAA
AGCCTAGTTTTACGCCTACGCCTCTGGGGCGGAGCAGGTTCAGCCGACCA
CCGAATGGTTGATAGCTCCACGAACAGAACGATTCCAATAAATGCACAAA
ACGTGTTGTATTCGAAAAAAAAAAAAAAAAAAAA

LD30408.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8617-RA 1483 CG8617-RA 111..1425 1..1315 6560 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10243093..10244277 1314..130 5895 99.8 Minus
chr2R 21145070 chr2R 10244459..10244591 133..1 650 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14355768..14356953 1315..130 5915 99.9 Minus
2R 25286936 2R 14357135..14357267 133..1 665 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14356967..14358152 1315..130 5915 99.9 Minus
2R 25260384 2R 14358334..14358466 133..1 665 100 Minus
Blast to na_te.dros performed 2019-03-16 21:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 2781..2816 726..761 117 80.6 Plus
transib1 2167 transib1 TRANSIB1 2167bp 1725..1843 980..1093 114 60 Plus

LD30408.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:59:50 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10243093..10244274 133..1314 99 <- Minus
chr2R 10244460..10244591 1..132 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:08 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
CG8617-RA 1..843 70..912 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:00 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
CG8617-RA 1..843 70..912 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:07:49 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
CG8617-RA 1..843 70..912 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:51:36 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
CG8617-RA 1..843 70..912 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:40 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
CG8617-RA 1..843 70..912 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:16:12 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
CG8617-RA 18..1331 1..1314 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:00 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
CG8617-RA 18..1331 1..1314 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:49 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
CG8617-RA 15..1328 1..1314 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:51:36 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
CG8617-RA 18..1331 1..1314 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:40 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
CG8617-RA 15..1328 1..1314 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:59:50 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14355769..14356950 133..1314 99 <- Minus
2R 14357136..14357267 1..132 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:59:50 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14355769..14356950 133..1314 99 <- Minus
2R 14357136..14357267 1..132 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:59:50 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14355769..14356950 133..1314 99 <- Minus
2R 14357136..14357267 1..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:49 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10243274..10244455 133..1314 99 <- Minus
arm_2R 10244641..10244772 1..132 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:05 Download gff for LD30408.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14356968..14358149 133..1314 99 <- Minus
2R 14358335..14358466 1..132 100   Minus

LD30408.hyp Sequence

Translation from 69 to 911

> LD30408.hyp
MHKTHRLTTDSQYMEVEGLLQAMDMPTSHDPEAELEPESTSLCRLSRYNV
TNLYDGPAGGGSSLSSGRQRCYTMPHVPPPAPPSTPTLLTSGCGGSSNSV
SVSISPTCSAGSHPLDSQSLSQSPLNHFIYVKNGKNLRRESRCVDSELSK
LFNVVSITNRLTAIKNRSNSISNSSGILNASRTISKLNGATATKIFKIHR
DPKEFLRETDEDSVSAPEYDEEEEDTRFRFFRRARFSRRYSTARSGRKFA
RKFARFEHHERMETIVDSFDAAMSFNDADT*

LD30408.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8617-PA 280 CG8617-PA 1..280 1..280 1450 100 Plus

LD30408.pep Sequence

Translation from 69 to 911

> LD30408.pep
MHKTHRLTTDSQYMEVEGLLQAMDMPTSHDPEAELEPESTSLCRLSRYNV
TNLYDGPAGGGSSLSSGRQRCYTMPHVPPPAPPSTPTLLTSGCGGSSNSV
SVSISPTCSAGSHPLDSQSLSQSPLNHFIYVKNGKNLRRESRCVDSELSK
LFNVVSITNRLTAIKNRSNSISNSSGILNASRTISKLNGATATKIFKIHR
DPKEFLRETDEDSVSAPEYDEEEEDTRFRFFRRARFSRRYSTARSGRKFA
RKFARFEHHERMETIVDSFDAAMSFNDADT*

LD30408.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11356-PA 292 GF11356-PA 1..292 1..280 803 71.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22429-PA 280 GG22429-PA 1..280 1..280 1468 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22124-PA 268 GH22124-PA 3..268 2..280 799 67.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8617-PA 280 CG8617-PA 1..280 1..280 1450 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19353-PA 270 GI19353-PA 3..270 2..280 770 66.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11404-PA 279 GL11404-PA 1..279 1..280 833 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21212-PA 279 GA21212-PA 1..279 1..280 833 74.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20216-PA 274 GM20216-PA 1..274 1..280 1413 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25687-PA 274 GD25687-PA 1..274 1..280 1413 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20336-PA 259 GJ20336-PA 4..259 3..280 794 67.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21838-PA 269 GK21838-PA 12..269 10..280 644 53.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12318-PA 280 GE12318-PA 1..280 1..280 1467 98.6 Plus