Clone LD30439 Report

Search the DGRC for LD30439

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:304
Well:39
Vector:pOT2
Associated Gene/TranscriptCG12608-RA
Protein status:LD30439.pep: gold
Preliminary Size:1738
Sequenced Size:1623

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12608 2001-01-01 Release 2 assignment
CG12608 2001-07-04 Blastp of sequenced clone
CG12608 2003-01-01 Sim4 clustering to Release 3
CG12608 2008-04-29 Release 5.5 accounting
CG12608 2008-08-15 Release 5.9 accounting
CG12608 2008-12-18 5.12 accounting

Clone Sequence Records

LD30439.complete Sequence

1623 bp (1623 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051782

> LD30439.complete
TTGAATAGTCGTTGTCGTTGGAACACGTTTTGCCAGCAGAAACAAATTCT
TGAATAGAATTTAGTGACTTATTCGACAAATCCATTTAATTTTCCATTTC
CATTTTCATTTCAAACCGCTGCCATGCCGCCGGAAATGGAGATCATAGTG
GGCACCTACGAGGAGGTCCTGCTGGGCTTCAAGCTCATCAAATCGCCGAC
TGACGGCTTGACCGATTCCGTCAAATTTGAGCTGAAACAGACTTTTGCAG
ACAGCTCCCATGCAGGATCCATTACATCGGTGGCCGTGCAGTGGCCTTGG
GTGGCCAGTGGCGGTACCGACGACAGGATCTTCGTCTACGACATGCGCAC
GCGGAAACAGTCGCAGATCATACTCTCGCACGCCGGAAGAGTGAACACAC
TGAAATTCACACCTGACCTGTCGCACTTGCTCTCCGGGAGCGACGATGGC
CATATGATCGCCACACGCGTGGGCAGCTGGACCAAAGAGGGTGATTGGCA
GAAGGCCCATGCCGGACAGGCCGTCACCCACATCAGTTGCCATCCCAGCA
GCAAGTTGGCCTTATCTTTGGGCGGCGACCAGGTGCTGAACACCTGGAAT
CTGGTCAATGGCCGCGTCGCCTACAAGACCAATTTAAAGAACAAGGCTAC
GCTGGGTCTCCAACCGGGCTGCTTGTCGTGGTCCAAGCAGGGCGATCACT
TCACACTTAGCGGTCCATTGGTTCTGGAGATCTGGGGCATCGAGAACGCT
CATGTTATGCGTCGCATTGAGATGCCGGCGAAACCCATTTGCATCACCTG
GCTGGATGGGAACGAGTGTTTAACTGGCCTGGACAACGGCAACATTGCCT
GGATTTCCCTCAAGGACGAGGATGATACACCACCCACCTTCATTCTTGCA
CACGAGGCAAGGGTCAAGGCCATCGCCTATCTGAACGAATTACTGGCCAC
CGTCTCCAGCGCTGGTGAAATCAAAGTCTGGAAGATCGACATGGAAACGC
GCAAGCTGGAGGAGATTGCCAGCAGCTTCATGGACTGCCGACCCACCGAC
TTGGGCCTGCTGGATCTCCGCCAGTTCGGCAATGTCCAACCGGTGGAACA
ACGCATTAAAGTGGAGGAGAAACCAAAGGCGAAAGTGGAGTCTGACCAAA
GTGCCAAGCCTGCAGCACCTCGGGGATTCGTGACCATCGAGTACGAGCAG
GATAAGAATCTGGATGCCGAGAAGAAGAAGGGAAAGGGGAAGAAGAACAA
GATACAGGCAAAGAAGGCGCAACAGAAAGCCGAGGAATCCTCAGAAGAAA
GCAACTCATCGGAAGAAAAGGAGAGCGACGACTTCTCCGACAGCGACAGC
GATGTCTCCAGTGATCACGGCCACCGGAAGAGGAAGCCAATGAAGCGCAA
GCAGCAACCCACTCCAGCCTCCAAGGGGAAGGCAAAGCAGCAGAAAAAGA
AGTAGTTTTTAGTAGCTAACGTTATGACTATCAATAAATATTGAGTTAAT
CTAGAGATATAGATAAAAAAACCATAGATGAACTGTCGATTTGGCTGGGA
TGAACAGAATTATGAATAAATACCTCTGAACTTAAGAAGTTCGATCTCAT
TAACGAAAAAAAAAAAAAAAAAA

LD30439.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12608.a 1949 CG12608.a 345..1949 1..1605 8025 100 Plus
CG12608-RA 1724 CG12608-RA 120..1724 1..1605 8025 100 Plus
CG9123-RA 1628 CG9123-RA 11..1252 3..1244 5520 96.2 Plus
CG9123-RA 1628 CG9123-RA 1255..1589 1274..1608 1380 94.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15233670..15234551 882..1 4395 99.9 Minus
chrX 22417052 chrX 15231159..15232038 882..3 3935 96.5 Minus
chrX 22417052 chrX 15232794..15233444 1605..955 3255 100 Minus
chrX 22417052 chrX 15230310..15230641 1605..1274 1345 94.9 Minus
chrX 22417052 chrX 15230644..15230933 1244..955 1270 95.9 Minus
chrX 22417052 chrX 15233534..15233610 959..883 370 98.7 Minus
chrX 22417052 chrX 15231024..15231099 958..883 350 97.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:23:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15343733..15344614 882..1 4410 100 Minus
X 23542271 X 15341222..15342101 882..3 3920 96.4 Minus
X 23542271 X 15342854..15343507 1608..955 3270 100 Minus
X 23542271 X 15340370..15340704 1608..1274 1360 95 Minus
X 23542271 X 15340707..15340996 1244..955 1285 96.2 Minus
X 23542271 X 15343597..15343673 959..883 385 100 Minus
X 23542271 X 15341087..15341162 958..883 350 97.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15351831..15352712 882..1 4410 100 Minus
X 23527363 X 15349320..15350199 882..3 3920 96.3 Minus
X 23527363 X 15350952..15351605 1608..955 3270 100 Minus
X 23527363 X 15348468..15348802 1608..1274 1380 94.9 Minus
X 23527363 X 15348805..15349094 1244..955 1285 96.2 Minus
X 23527363 X 15351695..15351771 959..883 385 100 Minus
X 23527363 X 15349185..15349260 958..883 350 97.3 Minus
Blast to na_te.dros performed 2019-03-15 13:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Fw2 3961 Fw2 FW2 3961bp 3656..3701 1596..1551 113 71.7 Minus

LD30439.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:42:26 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15232794..15233439 960..1605 100 <- Minus
chrX 15233534..15233610 883..959 98 <- Minus
chrX 15233670..15234551 1..882 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:12 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 1..1332 124..1455 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:04 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 1..1332 124..1455 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:09:02 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 1..1332 124..1455 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:51:40 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 1..1332 124..1455 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:37:34 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 1..1332 124..1455 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:16:17 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 1..1605 1..1605 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:04 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 8..1612 1..1605 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:09:02 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 12..1616 1..1605 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:51:40 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 1..1605 1..1605 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:37:34 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 12..1616 1..1605 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:42:26 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
X 15343733..15344614 1..882 100   Minus
X 15342857..15343502 960..1605 100 <- Minus
X 15343597..15343673 883..959 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:42:26 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
X 15343733..15344614 1..882 100   Minus
X 15342857..15343502 960..1605 100 <- Minus
X 15343597..15343673 883..959 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:42:26 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
X 15343733..15344614 1..882 100   Minus
X 15342857..15343502 960..1605 100 <- Minus
X 15343597..15343673 883..959 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:09:02 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15236890..15237535 960..1605 100 <- Minus
arm_X 15237630..15237706 883..959 100 <- Minus
arm_X 15237766..15238647 1..882 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:09 Download gff for LD30439.complete
Subject Subject Range Query Range Percent Splice Strand
X 15350955..15351600 960..1605 100 <- Minus
X 15351695..15351771 883..959 100 <- Minus
X 15351831..15352712 1..882 100   Minus

LD30439.hyp Sequence

Translation from 123 to 1454

> LD30439.hyp
MPPEMEIIVGTYEEVLLGFKLIKSPTDGLTDSVKFELKQTFADSSHAGSI
TSVAVQWPWVASGGTDDRIFVYDMRTRKQSQIILSHAGRVNTLKFTPDLS
HLLSGSDDGHMIATRVGSWTKEGDWQKAHAGQAVTHISCHPSSKLALSLG
GDQVLNTWNLVNGRVAYKTNLKNKATLGLQPGCLSWSKQGDHFTLSGPLV
LEIWGIENAHVMRRIEMPAKPICITWLDGNECLTGLDNGNIAWISLKDED
DTPPTFILAHEARVKAIAYLNELLATVSSAGEIKVWKIDMETRKLEEIAS
SFMDCRPTDLGLLDLRQFGNVQPVEQRIKVEEKPKAKVESDQSAKPAAPR
GFVTIEYEQDKNLDAEKKKGKGKKNKIQAKKAQQKAEESSEESNSSEEKE
SDDFSDSDSDVSSDHGHRKRKPMKRKQQPTPASKGKAKQQKKK*

LD30439.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12608-PA 443 CG12608-PA 1..443 1..443 2313 100 Plus
CG9123-PA 434 CG9123-PA 1..434 1..443 2070 91 Plus

LD30439.pep Sequence

Translation from 123 to 1454

> LD30439.pep
MPPEMEIIVGTYEEVLLGFKLIKSPTDGLTDSVKFELKQTFADSSHAGSI
TSVAVQWPWVASGGTDDRIFVYDMRTRKQSQIILSHAGRVNTLKFTPDLS
HLLSGSDDGHMIATRVGSWTKEGDWQKAHAGQAVTHISCHPSSKLALSLG
GDQVLNTWNLVNGRVAYKTNLKNKATLGLQPGCLSWSKQGDHFTLSGPLV
LEIWGIENAHVMRRIEMPAKPICITWLDGNECLTGLDNGNIAWISLKDED
DTPPTFILAHEARVKAIAYLNELLATVSSAGEIKVWKIDMETRKLEEIAS
SFMDCRPTDLGLLDLRQFGNVQPVEQRIKVEEKPKAKVESDQSAKPAAPR
GFVTIEYEQDKNLDAEKKKGKGKKNKIQAKKAQQKAEESSEESNSSEEKE
SDDFSDSDSDVSSDHGHRKRKPMKRKQQPTPASKGKAKQQKKK*

LD30439.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21235-PA 442 GF21235-PA 1..442 1..443 1438 66.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19407-PA 449 GG19407-PA 1..439 1..433 1630 75.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17949-PA 444 GH17949-PA 4..369 3..366 1027 53.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12608-PA 443 CG12608-PA 1..443 1..443 2313 100 Plus
CG9123-PA 434 CG9123-PA 1..434 1..443 2070 91 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15418-PA 707 GI15418-PA 1..362 1..362 989 49.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14746-PA 310 GL14746-PA 1..56 1..59 167 52.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11717-PA 513 GA11717-PA 12..415 1..410 1149 54.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10041-PA 442 GM10041-PA 1..432 1..433 1831 85.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15809-PA 475 GD15809-PA 1..463 1..431 1762 76.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16376-PA 482 GJ16376-PA 1..416 1..432 1025 45 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19853-PA 438 GK19853-PA 1..361 1..360 1200 61.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16055-PA 453 GE16055-PA 1..357 1..359 1584 81.6 Plus