Clone LD30472 Report

Search the DGRC for LD30472

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:304
Well:72
Vector:pOT2
Associated Gene/TranscriptCG5276-RA
Protein status:LD30472.pep: gold
Preliminary Size:1755
Sequenced Size:1623

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5276 2001-01-01 Release 2 assignment
CG5276 2001-09-19 Blastp of sequenced clone
CG5276 2003-01-01 Sim4 clustering to Release 3
CG5276 2008-04-29 Release 5.5 accounting
CG5276 2008-08-15 Release 5.9 accounting
CG5276 2008-12-18 5.12 accounting

Clone Sequence Records

LD30472.complete Sequence

1623 bp (1623 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058610

> LD30472.complete
AAACAGAGCAGCAGACCAAGAAAATCGGACACATCACCGCGAACGAGATC
TTGCTGACGTGCGACCAGATGCAGAGCCCTGCCTTCGCGTACCGGGAACA
CGCAGAACACTCGCCGCGCGCCATGTACATGCGCGACTGGCGATCGGCCC
TGCGGACGCCCACGTACCGGATTGGGAATCGGACGGTGCGCTTTAACTAT
CACTTCGCCCTTCTGATTGTTTGCGCCTTCGTACTCGTCCTACTCTTCTA
CTTTGCGCGCCAGGGATCGCACTCCTCCTCCGACGGCTACTGGCTGCGCC
GCAGTTACACGGATGCCCGGAGTCTGGACAATGGTGGTCCAGTGGTCCAG
GCCTACAATGCCACATATCCGCTCACGTCACCCATGGTGCTGCGTGGCGG
TGTGATAAACTACCGGATAGCCATGATTGCCGATCTGGACACCAGTTCCA
AGGTGAGCAAGGGCGATGGGAGCAGCACGTGGCGTAGCTACCTGAAGAAG
GGCTACCTTACCTACACGGTGGCCAGGTCAGAGATCCAGATTAGCTGGGA
TGACGGGGCGCCGATAGTCCTGGAATCAGCATTTGCCCTTAAGGGCCGCG
GAATGGAGCTATCTGAGCTAGTCACCTTCAACGGGCGCCTGCTCACCTTC
GACGACCGAACGGGTTTGATATACGAGATTGTGAATGACAAGCCCATTCC
CTGGGTGATCCTGCTCGATGGAGACGGACACAGTGCCAAGGGCTTCAAGG
CCGAATGGGCCACAGTGAAAGAGCAAACGCTGTATGTGGGCTCCATGGGC
AAGGAGTGGACGACAAGTGCGGGTGATTTCGAGAACAATAACCCCATGTA
CGTAAAGGCCATCACTCCGTCCGGCGAGGTGAGGTCGCTCAACTGGGTGG
ACAATTTCAAGCAGTTGCGCCTGCAGTCGATGCAAATAACCTGGCCGGGC
TACATGATCCACGAGAGTGGAACCTGGTCAGAGGAAAGGAATCGCTGGTT
TTTCCTGCCTAGGCGGTGTTCGAAAGAGAAATACAACGAAACCAAGGACG
AGCACATGGGCTGCAATGTCCTGGTCTCCGCCGACGAAAGCTTCACCAAC
GTTGAGACTGTACGGCTCGATCCTGAAAATACAACGCCCACGCATGGTTT
CTCTAGCTTTAAGTTCTTGCCCGGCACCGATGACTCAATAATCGTGGCTC
TTAAGTCGGAGGAGTTGAATGGCAAGACGGCCACCTTCATCACAGCCTTC
GATATTGCGGGCAAGACACTGCTGCCCGAAACGAGGATCGAGACGGACTA
CAAGTATGAGGGATTCGAGTTCATTTAGCTCGCCATTCCAAGCTACCGCA
CTCCACTCTACTTCGATCCAGGTGCTTCAGTTTTAAACGTGTACATATTG
TATTATTGTCCCATACGGTAAGCTTTATATTTATAGTCACCTAGATTAGT
CCAGAGATGCTCATCTGCCTCATGAACCGTGACTCCTTGTCCCGTCTTGT
ACCATAGCACAAAAAAAAATTTTAGTTTATTTTTATTAAAATTGAAATAT
AAAACGTACAAAGCCGGTGGCAAACTCAGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

LD30472.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5276-RA 1841 CG5276-RA 233..1815 1..1583 7915 100 Plus
CG6744-RA 1967 CG6744-RA 1889..1967 1583..1505 395 100 Minus
CG6744.a 1981 CG6744.a 1913..1981 1495..1427 345 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7257381..7258410 1..1030 5150 100 Plus
chr3R 27901430 chr3R 7258465..7259013 1031..1579 2745 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11431911..11432940 1..1030 5150 100 Plus
3R 32079331 3R 11432995..11433547 1031..1583 2765 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11172742..11173771 1..1030 5150 100 Plus
3R 31820162 3R 11173826..11174378 1031..1583 2765 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:11:52 has no hits.

LD30472.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:12:31 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7257381..7258410 1..1030 100 -> Plus
chr3R 7258465..7259013 1031..1579 91   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:20 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
CG5276-RA 1..1260 69..1328 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:48 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
CG5276-RA 1..1260 69..1328 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:20:52 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
CG5276-RA 1..1260 69..1328 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:17 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
CG5276-RA 1..1260 69..1328 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:51 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
CG5276-RA 1..1260 69..1328 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:49:49 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
CG5276-RA 174..1752 1..1579 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:47 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
CG5276-RA 174..1752 1..1579 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:20:52 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
CG5276-RA 174..1752 1..1579 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:17 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
CG5276-RA 174..1752 1..1579 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:51 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
CG5276-RA 174..1752 1..1579 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:31 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11431911..11432940 1..1030 100 -> Plus
3R 11432995..11433543 1031..1579 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:31 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11431911..11432940 1..1030 100 -> Plus
3R 11432995..11433543 1031..1579 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:31 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11431911..11432940 1..1030 100 -> Plus
3R 11432995..11433543 1031..1579 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:20:52 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7257633..7258662 1..1030 100 -> Plus
arm_3R 7258717..7259265 1031..1579 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:55 Download gff for LD30472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11172742..11173771 1..1030 100 -> Plus
3R 11173826..11174374 1031..1579 100   Plus

LD30472.hyp Sequence

Translation from 2 to 1327

> LD30472.hyp
TEQQTKKIGHITANEILLTCDQMQSPAFAYREHAEHSPRAMYMRDWRSAL
RTPTYRIGNRTVRFNYHFALLIVCAFVLVLLFYFARQGSHSSSDGYWLRR
SYTDARSLDNGGPVVQAYNATYPLTSPMVLRGGVINYRIAMIADLDTSSK
VSKGDGSSTWRSYLKKGYLTYTVARSEIQISWDDGAPIVLESAFALKGRG
MELSELVTFNGRLLTFDDRTGLIYEIVNDKPIPWVILLDGDGHSAKGFKA
EWATVKEQTLYVGSMGKEWTTSAGDFENNNPMYVKAITPSGEVRSLNWVD
NFKQLRLQSMQITWPGYMIHESGTWSEERNRWFFLPRRCSKEKYNETKDE
HMGCNVLVSADESFTNVETVRLDPENTTPTHGFSSFKFLPGTDDSIIVAL
KSEELNGKTATFITAFDIAGKTLLPETRIETDYKYEGFEFI*

LD30472.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5276-PB 419 CG5276-PB 1..419 23..441 2223 100 Plus
CG5276-PA 419 CG5276-PA 1..419 23..441 2223 100 Plus

LD30472.pep Sequence

Translation from 68 to 1327

> LD30472.pep
MQSPAFAYREHAEHSPRAMYMRDWRSALRTPTYRIGNRTVRFNYHFALLI
VCAFVLVLLFYFARQGSHSSSDGYWLRRSYTDARSLDNGGPVVQAYNATY
PLTSPMVLRGGVINYRIAMIADLDTSSKVSKGDGSSTWRSYLKKGYLTYT
VARSEIQISWDDGAPIVLESAFALKGRGMELSELVTFNGRLLTFDDRTGL
IYEIVNDKPIPWVILLDGDGHSAKGFKAEWATVKEQTLYVGSMGKEWTTS
AGDFENNNPMYVKAITPSGEVRSLNWVDNFKQLRLQSMQITWPGYMIHES
GTWSEERNRWFFLPRRCSKEKYNETKDEHMGCNVLVSADESFTNVETVRL
DPENTTPTHGFSSFKFLPGTDDSIIVALKSEELNGKTATFITAFDIAGKT
LLPETRIETDYKYEGFEFI*

LD30472.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16866-PA 422 GF16866-PA 1..422 1..419 1958 85.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18156-PA 418 GG18156-PA 1..418 1..419 2124 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17322-PA 417 GH17322-PA 1..417 1..419 1708 75.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5276-PB 419 CG5276-PB 1..419 1..419 2223 100 Plus
CG5276-PA 419 CG5276-PA 1..419 1..419 2223 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10286-PA 414 GI10286-PA 1..414 1..419 1748 75.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12374-PA 419 GL12374-PA 3..419 2..419 1893 85.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18779-PA 419 GA18779-PA 3..419 2..419 1902 85.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23945-PA 419 GM23945-PA 1..419 1..419 2198 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18755-PA 420 GD18755-PA 1..420 1..419 2175 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11094-PA 415 GJ11094-PA 1..415 1..419 1769 75.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11295-PA 417 GK11295-PA 1..417 1..419 1828 81.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26097-PA 418 GE26097-PA 1..418 1..419 2122 94 Plus