Clone LD30509 Report

Search the DGRC for LD30509

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:305
Well:9
Vector:pOT2
Associated Gene/TranscriptCG11802-RA
Protein status:LD30509.pep: gold
Preliminary Size:1541
Sequenced Size:1475

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11802 2001-01-01 Release 2 assignment
CG11802 2002-04-04 Blastp of sequenced clone
CG11802 2003-01-01 Sim4 clustering to Release 3
CG11802 2008-04-29 Release 5.5 accounting
CG11802 2008-08-15 Release 5.9 accounting
CG11802 2008-12-18 5.12 accounting

Clone Sequence Records

LD30509.complete Sequence

1475 bp (1475 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095044

> LD30509.complete
TGCGATTCGATTTGAGGCTTTGGCATCGATTTGTTTTGAGGTGTAAATCG
ACTGGCTTGGGCCACTGGAAATGAAGCAGCAGGTGGGCCCAGGACAGCAA
CAGTGACAGCGCCAGCTAACCACAAAATTCGGGCCAGGAGTACGCGGAAC
TTGGAGTCGGAATCGACAGGAATCGGATCGATAAATGGGCGCCGAGCATT
CGCAGCAGCGGGCTGAGGCCGATGGCCACGAGATCTTCGACGGACGCCAG
CCACCAGGAGCGGGCACTGGATCCCTCGGCGATGGCAGCTCCATGATGCT
GGCGGCCACGGCGGCGGCCAACAAACGACGCGGAGTTGGTCATCGCCAGC
AGACGACAGGAGGAGCAGGCGGAACAGTGGTGGGCCCGGGAGCTGGAGTG
GGCCCAGCTAGCATTGTGATAGCTAGCAAGCAGATCATCGCCGAGGCCGC
TTCGCCCGGCGGCTCCGAACTGAGCAGACCGCCTTCGCCGCCGCTTAGCG
TCTGCTCCGACCTGCCATATGTGTCCTATACAGATCGGCCAATCGGTGAT
TCGCCCAAGATACGCAGCAAGCCGGCGCATATGCTCCAGCAGAGCAGCGC
CAGCCGTGCGGCGGCCAGGAAGTCACATCCGAGTGGACTCACCAGCGCCG
TGAAACCGAAGCGACCACAGTCCACGGCCTCTAGTCATAATATAGTGATT
GTGCGTCCCGGTGCCATCGATGCTGGCGAGGATGTGGACATGGACTTGGC
ACGATTGCGCAATATACCGCAGTTTCTGCCCGTGCTCCGTGAATCCATCA
CGTCGGCGACCAATACACGAGATGCAGAGATTCTGGAGCGACTAAACTCG
CAGCATTTGATCAACATATGTACCCGCATGCAAACACATCTTAATCTGTG
CGCCAGCTATGTGGCCAGCGAACAGAATCACCTCGTGGAACGTACCAAGG
TGGTGAGCAACTCGATCACCACCCTCTTTGCCGGATTCGTGGACATGCAG
AAGACGTACGCCTCGTACGCCGAGCAATTCGCCAAGATTCGGAGCATATC
GCATCAGCTGAGCAGATGCAACTCGCTGCTGCACGAGAACATAGCCAGTC
TGGAGGCGATCAATAACTTCCTGGACGACGAGGACCGCCTGGAGCCCTTC
GTCTGGCGCACCGACGACAACAAGCTGCGCGGCGAGGCTGAGGGCGCCAT
CGGAGGCAACAGCAGTCGCCTGTGGCGGCTGTAGGATCCCCACACACTTA
TTGGTCTCCAAAGATTTTCCTAGCTCATAATAATCGTGTATTTATTGTGT
ATATTACTCGTTAACGATGCCGCTTAATCGTGATTTTTAATTAGTAAATC
AAACCTAATATTAAACTCAATTTGATATTTTATTTCTCGAAATGCAAATA
GTATTTTTCTATATTATCACGAAAAAAAAAAAAAAAATTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

LD30509.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11802-RA 1480 CG11802-RA 49..1475 1..1427 7135 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11762433..11763859 1427..1 7090 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11871304..11872730 1427..1 7135 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11879402..11880828 1427..1 7135 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:46:36 has no hits.

LD30509.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:47:38 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11762439..11763859 1..1421 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:23 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
CG11802-RA 1..1050 185..1234 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:16:55 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
CG11802-RA 1..1050 185..1234 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:03 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
CG11802-RA 1..1050 185..1234 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:39 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
CG11802-RA 1..1050 185..1234 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:09 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
CG11802-RA 1..1050 185..1234 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:47:00 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
CG11802-RA 49..1469 1..1421 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:16:54 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
CG11802-RA 49..1469 1..1421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:03 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
CG11802-RA 50..1470 1..1421 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:40 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
CG11802-RA 49..1469 1..1421 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:09 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
CG11802-RA 50..1470 1..1421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:38 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
X 11871310..11872730 1..1421 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:38 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
X 11871310..11872730 1..1421 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:38 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
X 11871310..11872730 1..1421 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:03 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11765343..11766763 1..1421 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:30:12 Download gff for LD30509.complete
Subject Subject Range Query Range Percent Splice Strand
X 11879408..11880828 1..1421 100   Minus

LD30509.pep Sequence

Translation from 184 to 1233

> LD30509.pep
MGAEHSQQRAEADGHEIFDGRQPPGAGTGSLGDGSSMMLAATAAANKRRG
VGHRQQTTGGAGGTVVGPGAGVGPASIVIASKQIIAEAASPGGSELSRPP
SPPLSVCSDLPYVSYTDRPIGDSPKIRSKPAHMLQQSSASRAAARKSHPS
GLTSAVKPKRPQSTASSHNIVIVRPGAIDAGEDVDMDLARLRNIPQFLPV
LRESITSATNTRDAEILERLNSQHLINICTRMQTHLNLCASYVASEQNHL
VERTKVVSNSITTLFAGFVDMQKTYASYAEQFAKIRSISHQLSRCNSLLH
ENIASLEAINNFLDDEDRLEPFVWRTDDNKLRGEAEGAIGGNSSRLWRL*

LD30509.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21592-PA 352 GF21592-PA 1..352 1..349 1530 83.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18825-PA 349 GG18825-PA 1..349 1..349 1808 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12800-PA 352 GH12800-PA 1..352 1..349 1404 79 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11802-PA 349 CG11802-PA 1..349 1..349 1781 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15955-PA 366 GI15955-PA 1..366 1..349 1408 76.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20405-PA 340 GL20405-PA 1..340 1..349 1478 82.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11209-PA 340 GA11209-PA 1..340 1..349 1475 82.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13037-PA 349 GM13037-PA 1..349 1..349 1814 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15961-PA 154 GD15961-PA 1..137 1..137 563 94.2 Plus
Dsim\GD15962-PA 96 GD15962-PA 3..96 256..349 495 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18847-PA 357 GJ18847-PA 1..357 1..349 1404 78.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25492-PA 376 GK25492-PA 1..376 1..349 1220 68.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17589-PA 349 GE17589-PA 1..349 1..349 1809 97.4 Plus

LD30509.hyp Sequence

Translation from 184 to 1233

> LD30509.hyp
MGAEHSQQRAEADGHEIFDGRQPPGAGTGSLGDGSSMMLAATAAANKRRG
VGHRQQTTGGAGGTVVGPGAGVGPASIVIASKQIIAEAASPGGSELSRPP
SPPLSVCSDLPYVSYTDRPIGDSPKIRSKPAHMLQQSSASRAAARKSHPS
GLTSAVKPKRPQSTASSHNIVIVRPGAIDAGEDVDMDLARLRNIPQFLPV
LRESITSATNTRDAEILERLNSQHLINICTRMQTHLNLCASYVASEQNHL
VERTKVVSNSITTLFAGFVDMQKTYASYAEQFAKIRSISHQLSRCNSLLH
ENIASLEAINNFLDDEDRLEPFVWRTDDNKLRGEAEGAIGGNSSRLWRL*

LD30509.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11802-PA 349 CG11802-PA 1..349 1..349 1781 100 Plus