Clone LD30516 Report

Search the DGRC for LD30516

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:305
Well:16
Vector:pOT2
Associated Gene/TranscriptCG18616-RA
Protein status:LD30516.pep: gold
Sequenced Size:2182

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18616 2013-01-04 Manual selection by Ken Wan

Clone Sequence Records

LD30516.complete Sequence

2182 bp assembled on 2013-08-21

GenBank Submission: BT150205.1

> LD30516.complete
TGGATTGGTTCGGTTTTTTTGTTTTTATTTATTTTTGGCATGGACTCGGC
GGAATCCCCCACCAAAACGCAGGCCGGCGAGGACGAGAACTACAGTCTGC
TGTGCCAGGCGCACGAGCAGTTCAACAACTCGGAGTTTGATCGCTGCTTG
GAACTGCTCCAGGAGTTGGAGACGCGCGGCGAGAGCAGTGGTCCTGTCCT
GCGGCACAACCGGGCGGTGGTCAGCTACTACAAAACCGGGTGCACCCAAC
ACTCCGTCCTGCTGAAAGAACTGGAGGCTCTAACCGCCGATGCAGATGCG
CCCGGAGACGTGTCCAGCGGGCTGAGCCTTAAGCAGGGAGCTGCCGCCGC
CACTGTTGCTCGTTACAACCGGGCGGTCATCTATTATCACCGCCATATGT
TCGGCACGGCACTGGAGAAACTAGCACCACTAGTGGCTCGTCTGGAAGCC
CTGGAGAAGGCAATGGCAGCGCTGGTGGCCACACTACAGCTACAGCTGCT
GCTGGCCACCAATCAACTAAACCGAGCCGAGGCCTTTCTGGATTACTTGC
AGTACAAGCTTAACCTGGTGGCCACAGCGCCTAGCAGCAATGCGGCCGAA
GAGGCAGCTGTTGTCGGCACAGCACCTCCGTCAGCAGCGACGAACAGTTC
AGTGGTGGCCTCACCAGGAGGAGCAGCTGTGGAGGGAGCTGTGCCCGGTC
TGGGCGGTAGTCTGCAGCTCTTGCAGCTAATAACGCTCGTGCTTAACCGA
AAACCGGTGGTTATTCAGGAAGACGGCACGCCGGAGTACGCTGCTCTGAA
GGCTCAGCAGTACTACATCATGAAGGATTTTCAGATGGCCGCCAAGCAGC
TTATGCGAATCAATAACGAGTGTACACAAGCGGGCACTATAACCCCCCAG
CTGAGCACGTGCATTGCCAACAATATGGGAGTGATACACTTAAGAGTGCG
TCACTATGCCATCGCCGCCAAGTTCTTCCAAAATGCGCTCAACTTTGACC
AGCAGCTGGCGCGAAATTTGCGCCAGAGTACGCTGCAAACCATGAGTTCG
GCACGGTCCTGCGAGATCCTTTACAACCTCGGTGTGGCCATGTTGCACCT
ACGACGCCCCAAGGAGGCGTTTCAGTGCTTTCTGGTTCCCGTTAAGCAAT
TCCACAGCAATCCACGTCTTTGGCTGCGCATGGCTGAGGCCTGCATCATG
GAGCATGAGGCGAAACTAGTGGAGGAGGAGCGCCAGTCGCAGTCAGAAAC
GCCATCAACAAAGCCATACGCTCCTCAATCGGCGGGAGTTCCAGAGCCCA
CGCTGGAATTCGCTGTCTTGTGTCTACGTAGCGCGTTAACGCTTACGCAG
CACTACAAGACGAGGTTTCACATGGCGGCGGTCTCCTCGGAGGATGTGGA
AGCACCCGAACCCAAGGACCCAACTCAGGAGAGTTGGCGTCATCCCCAGG
ACAATAACTTCTGCAATCCCTCGAAGCCAGTCAGCCTAGAGTCTTTGGAA
AACATGATGGCTGCCATATATGCTGCTCACAGCTTCGTCTCGCTGCGCCT
AGGCGATCATGTGACCGCGCTCGAGATGTCGGAAAAACTGCTGGCCTGTG
AACGCTTGTCCGATGCACACAAATTGCTAGGTCACATGTACGCTGGCGAG
GCGTTGATGCTTATGGACAAGGCCAGCGAGGCACGCGACCATTTGGACCC
TACTTTTGTGGGCACACTAAACGCCTTCGATTTTGAGACGCGTGACTGGC
AACTGAAGTCGGTGGACGCCGCTCAGAACGTTGTGCGGTATAATCTGGCC
GTTGCCATGGCTCTACAGAACGACCTGCCTCAAGCTAAAGCACTCCTGGC
CAATTTAACTCATTCGCTGGTTGCCAACAAGGCGCTTGCTTTGCGACGCT
TCATGGACCTCAAAATGGGTCCCGTTCCTGGCGGGACGCCGAGTTAGACA
ACAAATTGTGTATATAACTAGACGGAATTAAAGTGCAAGAATGAAATGAC
GAGGAAGCGAACTATTTGTTTGACGATCATCAGTTTTTCAGCATTTTACA
GGGTGCAAACAAGGTGTATAAAACAATGTCTGTTAACTAATCCATATGTG
CTTATATATTTGTACACAGAGAATTGGTGTTGGCAATAGCAAATTATCTC
ACAATATTTTAAAAAAAAAAAAAAAAAAAAAA

LD30516.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8456139..8456894 129..884 3780 100 Plus
chr3R 27901430 chr3R 8457913..8458450 1623..2160 2690 100 Plus
chr3R 27901430 chr3R 8457496..8457846 1272..1622 1755 100 Plus
chr3R 27901430 chr3R 8456954..8457282 884..1212 1645 100 Plus
chr3R 27901430 chr3R 8455937..8456064 1..128 640 100 Plus
chr3R 27901430 chr3R 8457378..8457437 1212..1271 300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12630878..12631633 129..884 3780 100 Plus
3R 32079331 3R 12632651..12633189 1623..2161 2695 100 Plus
3R 32079331 3R 12632235..12632585 1272..1622 1755 100 Plus
3R 32079331 3R 12631693..12632021 884..1212 1645 100 Plus
3R 32079331 3R 12630676..12630803 1..128 640 100 Plus
3R 32079331 3R 12632117..12632176 1212..1271 300 100 Plus
Blast to na_te.dros performed on 2019-03-17 00:16:23 has no hits.

LD30516.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:17:08 Download gff for LD30516.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8455937..8456064 1..128 100 -> Plus
chr3R 8456139..8456894 129..884 100 -> Plus
chr3R 8456955..8457282 885..1212 100 -> Plus
chr3R 8457379..8457437 1213..1271 100 -> Plus
chr3R 8457496..8457846 1272..1622 100 -> Plus
chr3R 8457913..8458450 1623..2160 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-21 13:19:11 Download gff for LD30516.complete
Subject Subject Range Query Range Percent Splice Strand
CG18616-RA 1..1908 40..1947 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:18:24 Download gff for LD30516.complete
Subject Subject Range Query Range Percent Splice Strand
Not10-RA 1..1908 40..1947 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:19:11 Download gff for LD30516.complete
Subject Subject Range Query Range Percent Splice Strand
CG18616-RA 30..2026 1..1997 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:24 Download gff for LD30516.complete
Subject Subject Range Query Range Percent Splice Strand
Not10-RA 30..2026 1..1997 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:08 Download gff for LD30516.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12631694..12632021 885..1212 100 -> Plus
3R 12632118..12632176 1213..1271 100 -> Plus
3R 12630676..12630803 1..128 100 -> Plus
3R 12630878..12631633 129..884 100 -> Plus
3R 12632235..12632585 1272..1622 100 -> Plus
3R 12632651..12633188 1623..2160 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:08 Download gff for LD30516.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12631694..12632021 885..1212 100 -> Plus
3R 12632118..12632176 1213..1271 100 -> Plus
3R 12630676..12630803 1..128 100 -> Plus
3R 12630878..12631633 129..884 100 -> Plus
3R 12632235..12632585 1272..1622 100 -> Plus
3R 12632651..12633188 1623..2160 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:08 Download gff for LD30516.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12631694..12632021 885..1212 100 -> Plus
3R 12632118..12632176 1213..1271 100 -> Plus
3R 12630676..12630803 1..128 100 -> Plus
3R 12630878..12631633 129..884 100 -> Plus
3R 12632235..12632585 1272..1622 100 -> Plus
3R 12632651..12633188 1623..2160 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:19:11 Download gff for LD30516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8456398..8456525 1..128 100 -> Plus
arm_3R 8456600..8457355 129..884 100 -> Plus
arm_3R 8457416..8457743 885..1212 100 -> Plus
arm_3R 8457840..8457898 1213..1271 100 -> Plus
arm_3R 8457957..8458307 1272..1622 100 -> Plus
arm_3R 8458373..8458910 1623..2160 100   Plus

LD30516.hyp Sequence

Translation from 0 to 1946

> LD30516.hyp
WIGSVFLFLFIFGMDSAESPTKTQAGEDENYSLLCQAHEQFNNSEFDRCL
ELLQELETRGESSGPVLRHNRAVVSYYKTGCTQHSVLLKELEALTADADA
PGDVSSGLSLKQGAAAATVARYNRAVIYYHRHMFGTALEKLAPLVARLEA
LEKAMAALVATLQLQLLLATNQLNRAEAFLDYLQYKLNLVATAPSSNAAE
EAAVVGTAPPSAATNSSVVASPGGAAVEGAVPGLGGSLQLLQLITLVLNR
KPVVIQEDGTPEYAALKAQQYYIMKDFQMAAKQLMRINNECTQAGTITPQ
LSTCIANNMGVIHLRVRHYAIAAKFFQNALNFDQQLARNLRQSTLQTMSS
ARSCEILYNLGVAMLHLRRPKEAFQCFLVPVKQFHSNPRLWLRMAEACIM
EHEAKLVEEERQSQSETPSTKPYAPQSAGVPEPTLEFAVLCLRSALTLTQ
HYKTRFHMAAVSSEDVEAPEPKDPTQESWRHPQDNNFCNPSKPVSLESLE
NMMAAIYAAHSFVSLRLGDHVTALEMSEKLLACERLSDAHKLLGHMYAGE
ALMLMDKASEARDHLDPTFVGTLNAFDFETRDWQLKSVDAAQNVVRYNLA
VAMALQNDLPQAKALLANLTHSLVANKALALRRFMDLKMGPVPGGTPS*

LD30516.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Not10-PA 635 CG18616-PA 1..635 14..648 3229 100 Plus

LD30516.pep Sequence

Translation from 0 to 1946

> LD30516.pep
WIGSVFLFLFIFGMDSAESPTKTQAGEDENYSLLCQAHEQFNNSEFDRCL
ELLQELETRGESSGPVLRHNRAVVSYYKTGCTQHSVLLKELEALTADADA
PGDVSSGLSLKQGAAAATVARYNRAVIYYHRHMFGTALEKLAPLVARLEA
LEKAMAALVATLQLQLLLATNQLNRAEAFLDYLQYKLNLVATAPSSNAAE
EAAVVGTAPPSAATNSSVVASPGGAAVEGAVPGLGGSLQLLQLITLVLNR
KPVVIQEDGTPEYAALKAQQYYIMKDFQMAAKQLMRINNECTQAGTITPQ
LSTCIANNMGVIHLRVRHYAIAAKFFQNALNFDQQLARNLRQSTLQTMSS
ARSCEILYNLGVAMLHLRRPKEAFQCFLVPVKQFHSNPRLWLRMAEACIM
EHEAKLVEEERQSQSETPSTKPYAPQSAGVPEPTLEFAVLCLRSALTLTQ
HYKTRFHMAAVSSEDVEAPEPKDPTQESWRHPQDNNFCNPSKPVSLESLE
NMMAAIYAAHSFVSLRLGDHVTALEMSEKLLACERLSDAHKLLGHMYAGE
ALMLMDKASEARDHLDPTFVGTLNAFDFETRDWQLKSVDAAQNVVRYNLA
VAMALQNDLPQAKALLANLTHSLVANKALALRRFMDLKMGPVPGGTPS*

LD30516.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17110-PA 646 GF17110-PA 1..640 14..644 2696 85.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19082-PA 636 GG19082-PA 1..636 14..648 3106 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18702-PA 635 GH18702-PA 1..635 14..648 2189 69.9 Plus
Dgri\GH22207-PA 413 GH22207-PA 1..397 14..404 1378 72.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Not10-PB 635 CG18616-PB 1..635 14..648 3229 100 Plus
Not10-PA 635 CG18616-PA 1..635 14..648 3229 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22849-PA 648 GI22849-PA 1..643 14..640 2253 71.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13920-PA 641 GL13920-PA 1..629 14..640 2504 79.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15014-PA 641 GA15014-PA 1..629 14..640 2502 79.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24046-PA 635 GM24046-PA 1..635 14..648 3346 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18846-PA 635 GD18846-PA 1..635 14..648 3346 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14150-PA 637 GJ14150-PA 1..632 14..640 2280 73 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13721-PA 653 GK13721-PA 1..644 14..636 2218 71.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26206-PA 636 GE26206-PA 1..636 14..648 3310 97.2 Plus