BDGP Sequence Production Resources |
Search the DGRC for LD30520
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 305 |
Well: | 20 |
Vector: | pOT2 |
Associated Gene/Transcript | Hexim-RA |
Protein status: | LD30520.pep: gold |
Preliminary Size: | 1691 |
Sequenced Size: | 1536 |
Gene | Date | Evidence |
---|---|---|
CG3508 | 2001-01-01 | Release 2 assignment |
CG3508 | 2001-07-04 | Blastp of sequenced clone |
CG3508 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3508 | 2008-04-29 | Release 5.5 accounting |
CG3508 | 2008-08-15 | Release 5.9 accounting |
CG3508 | 2008-12-18 | 5.12 accounting |
1536 bp (1536 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051786
> LD30520.complete CTTAGTATAAAAATCGCAAACCTACAAATCGGCAACAAATCTCCAGTTAT AGCTTAAAGTGTTAATTAAGTGCTTAATAAATTAAGTATTTGTGTTGGCA ACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCCAACAACGACCTTTG GATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGCGGTGTCGCTGTAGG AGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCGGGGAAAAAAATCCA AGATGCAGCCCAAGAAGACCAAGAACCATTATCCGCAGTGGAAACTCGAT ATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAATCAACGACAGAATAG CAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGTTCCGTACAACACGA ACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGCACAAAGATGACTCC GACGACAACTGTTTTGGCTCCCAGACCGAAGATCAGGTGCTCTTCCTTTC CAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCTCGAACGTTTGGAGA CGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGCAAATCGAAGATCGA TATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGAGCCAAATTACGAGC GCAGGATGATAAGATTCGCCAACTATCACGTGAGAATCAATTTCTGCGCA CCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGACCAGCGGCAGCAGCA GCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCCACTCCCAGTTCAGC TTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCAGCCACAACCCACAC CCATGGACTCCACCAGCGAGGACAGCGAAAGCGACAGCAGCAGCACCACG TCGAGCACCACGTCCACCACTTCCTCGACCAGCAGCGATGGTCACGAAAT GGGCGTGGCCGGCCTGAACATAGCCAATGGGCATGCCGAGCGGCACGAGA GGAGCCGCACCCGCTCCAGGTCTAGATCACCGATCCACCTGAATGGTCAT GCCAACGAGGAGGAGCGTCAGCGCCTGCTAGATGGAAATCAAATGGAGGA GGACGACAACTCCAGCGATGTATCCAGGCCAGCCGATGCAGTTGTCAAAT AGAATAAAATAGAAGAGTATGTCACTCCGCCGTGTGTAAATAAAAGACTC AATTGTGGTAGAATGTGGCGATAAATGGACATAATCCTTGTTTAGTTTTT AAGTCATCTGTGGACGCCTAAATTGTGAGGAGTTCCTTTCAATCATCAAA TAGCTCATCAAAAAGCATTCATCAGAAAGAATTAGCATTACTTTATTATC TGCAAACGACGCCTCCCAATTGTATTTTTGTTGGTCTGTATGGTGTATAG TTTAGCGGTGTTGCCTCGAAGTGTTGATTTTAATGGAACTTTGTATAATG AAAAATCGATTTGTAGATAAATAAAGAGTTAAAACATGAATTCGAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3508-RA | 1625 | CG3508-RA | 126..1621 | 1..1496 | 7480 | 100 | Plus |
CG3508-RB | 1624 | CG3508-RB | 243..1620 | 119..1496 | 6875 | 99.9 | Plus |
CG3508.a | 1512 | CG3508.a | 704..1508 | 692..1496 | 4025 | 100 | Plus |
CG3508.a | 1512 | CG3508.a | 25..703 | 1..679 | 3395 | 100 | Plus |
CG3508-RB | 1624 | CG3508-RB | 92..215 | 1..124 | 620 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 10485127..10485929 | 692..1494 | 4015 | 100 | Plus |
chr3R | 27901430 | chr3R | 10484495..10485069 | 124..698 | 2845 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 10484211..10484334 | 1..124 | 620 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 14660375..14661179 | 692..1496 | 4025 | 100 | Plus |
3R | 32079331 | 3R | 14659743..14660317 | 124..698 | 2845 | 99.7 | Plus |
3R | 32079331 | 3R | 14659459..14659582 | 1..124 | 620 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 14401206..14402010 | 692..1496 | 4025 | 100 | Plus |
3R | 31820162 | 3R | 14400574..14401148 | 124..698 | 2845 | 99.6 | Plus |
3R | 31820162 | 3R | 14400290..14400413 | 1..124 | 620 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2541 | 722..939 | 197 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 820..898 | 145 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2460 | 806..936 | 144 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2551 | 737..854 | 138 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6870 | 806..910 | 121 | 59.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1149 | 802..898 | 121 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1629 | 831..934 | 120 | 63.2 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..784 | 897..748 | 114 | 57 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 10484211..10484334 | 1..124 | 100 | -> | Plus |
chr3R | 10484496..10485062 | 125..691 | 100 | -> | Plus |
chr3R | 10485127..10485929 | 692..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3508-RA | 1..1050 | 103..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3508-RA | 1..1050 | 103..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hexim-RA | 1..1050 | 103..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3508-RA | 1..1050 | 103..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hexim-RA | 1..1050 | 103..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3508-RA | 19..1512 | 1..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3508-RA | 19..1512 | 1..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hexim-RA | 19..1512 | 1..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3508-RA | 19..1512 | 1..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hexim-RA | 22..1515 | 1..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14659459..14659582 | 1..124 | 100 | -> | Plus |
3R | 14659744..14660310 | 125..691 | 100 | -> | Plus |
3R | 14660375..14661177 | 692..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14659459..14659582 | 1..124 | 100 | -> | Plus |
3R | 14659744..14660310 | 125..691 | 100 | -> | Plus |
3R | 14660375..14661177 | 692..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14659459..14659582 | 1..124 | 100 | -> | Plus |
3R | 14659744..14660310 | 125..691 | 100 | -> | Plus |
3R | 14660375..14661177 | 692..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 10485181..10485304 | 1..124 | 100 | -> | Plus |
arm_3R | 10485466..10486032 | 125..691 | 100 | -> | Plus |
arm_3R | 10486097..10486899 | 692..1494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14400290..14400413 | 1..124 | 100 | -> | Plus |
3R | 14400575..14401141 | 125..691 | 100 | -> | Plus |
3R | 14401206..14402008 | 692..1494 | 100 | Plus |
Translation from 102 to 1151
> LD30520.pep MAEAVKNESGSQQRPLDSGGGGGASGGGGVAVGGGSGMPKRKHRRGKKSK MQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTN RFLMEEHMSELHKDDSDDNCFGSQTEDQVLFLSKEFSDVYERARLERLET MSKQELIQECMQIEDRYSKAQNISKEFGAKLRAQDDKIRQLSRENQFLRT HLLRTCSATAGPAAAAAAAASPPSAVAPTPSSACELQARQQPPQQPQPTP MDSTSEDSESDSSSTTSSTTSTTSSTSSDGHEMGVAGLNIANGHAERHER SRTRSRSRSPIHLNGHANEEERQRLLDGNQMEEDDNSSDVSRPADAVVK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17451-PA | 354 | GF17451-PA | 1..354 | 1..349 | 1043 | 79.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16869-PA | 344 | GG16869-PA | 1..344 | 1..349 | 1274 | 92.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18660-PA | 337 | GH18660-PA | 17..332 | 40..347 | 846 | 65.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hexim-PA | 349 | CG3508-PA | 1..349 | 1..349 | 1791 | 100 | Plus |
Hexim-PB | 360 | CG3508-PB | 1..360 | 1..349 | 1769 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10685-PA | 342 | GI10685-PA | 19..337 | 40..347 | 859 | 64.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24417-PA | 341 | GL24417-PA | 1..341 | 1..349 | 986 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17490-PA | 341 | GA17490-PA | 1..341 | 1..349 | 993 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24178-PA | 341 | GM24178-PA | 1..341 | 1..349 | 1224 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18971-PA | 348 | GD18971-PA | 1..348 | 1..349 | 1273 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24355-PA | 340 | GJ24355-PA | 17..335 | 40..347 | 914 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12813-PA | 350 | GK12813-PA | 1..340 | 1..339 | 856 | 70.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24250-PA | 344 | GE24250-PA | 1..344 | 1..349 | 1273 | 92.6 | Plus |
Translation from 102 to 1151
> LD30520.hyp MAEAVKNESGSQQRPLDSGGGGGASGGGGVAVGGGSGMPKRKHRRGKKSK MQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTN RFLMEEHMSELHKDDSDDNCFGSQTEDQVLFLSKEFSDVYERARLERLET MSKQELIQECMQIEDRYSKAQNISKEFGAKLRAQDDKIRQLSRENQFLRT HLLRTCSATAGPAAAAAAAASPPSAVAPTPSSACELQARQQPPQQPQPTP MDSTSEDSESDSSSTTSSTTSTTSSTSSDGHEMGVAGLNIANGHAERHER SRTRSRSRSPIHLNGHANEEERQRLLDGNQMEEDDNSSDVSRPADAVVK*