Clone LD30520 Report

Search the DGRC for LD30520

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:305
Well:20
Vector:pOT2
Associated Gene/TranscriptHexim-RA
Protein status:LD30520.pep: gold
Preliminary Size:1691
Sequenced Size:1536

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3508 2001-01-01 Release 2 assignment
CG3508 2001-07-04 Blastp of sequenced clone
CG3508 2003-01-01 Sim4 clustering to Release 3
CG3508 2008-04-29 Release 5.5 accounting
CG3508 2008-08-15 Release 5.9 accounting
CG3508 2008-12-18 5.12 accounting

Clone Sequence Records

LD30520.complete Sequence

1536 bp (1536 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051786

> LD30520.complete
CTTAGTATAAAAATCGCAAACCTACAAATCGGCAACAAATCTCCAGTTAT
AGCTTAAAGTGTTAATTAAGTGCTTAATAAATTAAGTATTTGTGTTGGCA
ACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCCAACAACGACCTTTG
GATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGCGGTGTCGCTGTAGG
AGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCGGGGAAAAAAATCCA
AGATGCAGCCCAAGAAGACCAAGAACCATTATCCGCAGTGGAAACTCGAT
ATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAATCAACGACAGAATAG
CAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGTTCCGTACAACACGA
ACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGCACAAAGATGACTCC
GACGACAACTGTTTTGGCTCCCAGACCGAAGATCAGGTGCTCTTCCTTTC
CAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCTCGAACGTTTGGAGA
CGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGCAAATCGAAGATCGA
TATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGAGCCAAATTACGAGC
GCAGGATGATAAGATTCGCCAACTATCACGTGAGAATCAATTTCTGCGCA
CCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGACCAGCGGCAGCAGCA
GCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCCACTCCCAGTTCAGC
TTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCAGCCACAACCCACAC
CCATGGACTCCACCAGCGAGGACAGCGAAAGCGACAGCAGCAGCACCACG
TCGAGCACCACGTCCACCACTTCCTCGACCAGCAGCGATGGTCACGAAAT
GGGCGTGGCCGGCCTGAACATAGCCAATGGGCATGCCGAGCGGCACGAGA
GGAGCCGCACCCGCTCCAGGTCTAGATCACCGATCCACCTGAATGGTCAT
GCCAACGAGGAGGAGCGTCAGCGCCTGCTAGATGGAAATCAAATGGAGGA
GGACGACAACTCCAGCGATGTATCCAGGCCAGCCGATGCAGTTGTCAAAT
AGAATAAAATAGAAGAGTATGTCACTCCGCCGTGTGTAAATAAAAGACTC
AATTGTGGTAGAATGTGGCGATAAATGGACATAATCCTTGTTTAGTTTTT
AAGTCATCTGTGGACGCCTAAATTGTGAGGAGTTCCTTTCAATCATCAAA
TAGCTCATCAAAAAGCATTCATCAGAAAGAATTAGCATTACTTTATTATC
TGCAAACGACGCCTCCCAATTGTATTTTTGTTGGTCTGTATGGTGTATAG
TTTAGCGGTGTTGCCTCGAAGTGTTGATTTTAATGGAACTTTGTATAATG
AAAAATCGATTTGTAGATAAATAAAGAGTTAAAACATGAATTCGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD30520.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3508-RA 1625 CG3508-RA 126..1621 1..1496 7480 100 Plus
CG3508-RB 1624 CG3508-RB 243..1620 119..1496 6875 99.9 Plus
CG3508.a 1512 CG3508.a 704..1508 692..1496 4025 100 Plus
CG3508.a 1512 CG3508.a 25..703 1..679 3395 100 Plus
CG3508-RB 1624 CG3508-RB 92..215 1..124 620 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10485127..10485929 692..1494 4015 100 Plus
chr3R 27901430 chr3R 10484495..10485069 124..698 2845 99.7 Plus
chr3R 27901430 chr3R 10484211..10484334 1..124 620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14660375..14661179 692..1496 4025 100 Plus
3R 32079331 3R 14659743..14660317 124..698 2845 99.7 Plus
3R 32079331 3R 14659459..14659582 1..124 620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14401206..14402010 692..1496 4025 100 Plus
3R 31820162 3R 14400574..14401148 124..698 2845 99.6 Plus
3R 31820162 3R 14400290..14400413 1..124 620 100 Plus
Blast to na_te.dros performed 2019-03-16 01:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2541 722..939 197 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6822 820..898 145 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2460 806..936 144 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2551 737..854 138 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6870 806..910 121 59.6 Plus
roo 9092 roo DM_ROO 9092bp 1058..1149 802..898 121 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1629 831..934 120 63.2 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..784 897..748 114 57 Minus

LD30520.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:07:41 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10484211..10484334 1..124 100 -> Plus
chr3R 10484496..10485062 125..691 100 -> Plus
chr3R 10485127..10485929 692..1494 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:24 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 1..1050 103..1152 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:56 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 1..1050 103..1152 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:21 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 1..1050 103..1152 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:51:32 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 1..1050 103..1152 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:23:47 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 1..1050 103..1152 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:16:06 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 19..1512 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:56 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 19..1512 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:21 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 19..1512 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:51:33 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 19..1512 1..1494 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:23:47 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 22..1515 1..1494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:41 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14659459..14659582 1..124 100 -> Plus
3R 14659744..14660310 125..691 100 -> Plus
3R 14660375..14661177 692..1494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:41 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14659459..14659582 1..124 100 -> Plus
3R 14659744..14660310 125..691 100 -> Plus
3R 14660375..14661177 692..1494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:41 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14659459..14659582 1..124 100 -> Plus
3R 14659744..14660310 125..691 100 -> Plus
3R 14660375..14661177 692..1494 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:21 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10485181..10485304 1..124 100 -> Plus
arm_3R 10485466..10486032 125..691 100 -> Plus
arm_3R 10486097..10486899 692..1494 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:01 Download gff for LD30520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14400290..14400413 1..124 100 -> Plus
3R 14400575..14401141 125..691 100 -> Plus
3R 14401206..14402008 692..1494 100   Plus

LD30520.pep Sequence

Translation from 102 to 1151

> LD30520.pep
MAEAVKNESGSQQRPLDSGGGGGASGGGGVAVGGGSGMPKRKHRRGKKSK
MQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTN
RFLMEEHMSELHKDDSDDNCFGSQTEDQVLFLSKEFSDVYERARLERLET
MSKQELIQECMQIEDRYSKAQNISKEFGAKLRAQDDKIRQLSRENQFLRT
HLLRTCSATAGPAAAAAAAASPPSAVAPTPSSACELQARQQPPQQPQPTP
MDSTSEDSESDSSSTTSSTTSTTSSTSSDGHEMGVAGLNIANGHAERHER
SRTRSRSRSPIHLNGHANEEERQRLLDGNQMEEDDNSSDVSRPADAVVK*

LD30520.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17451-PA 354 GF17451-PA 1..354 1..349 1043 79.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16869-PA 344 GG16869-PA 1..344 1..349 1274 92.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18660-PA 337 GH18660-PA 17..332 40..347 846 65.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-PA 349 CG3508-PA 1..349 1..349 1791 100 Plus
Hexim-PB 360 CG3508-PB 1..360 1..349 1769 96.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10685-PA 342 GI10685-PA 19..337 40..347 859 64.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24417-PA 341 GL24417-PA 1..341 1..349 986 78.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17490-PA 341 GA17490-PA 1..341 1..349 993 78.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24178-PA 341 GM24178-PA 1..341 1..349 1224 91.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18971-PA 348 GD18971-PA 1..348 1..349 1273 94 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24355-PA 340 GJ24355-PA 17..335 40..347 914 66.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12813-PA 350 GK12813-PA 1..340 1..339 856 70.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24250-PA 344 GE24250-PA 1..344 1..349 1273 92.6 Plus

LD30520.hyp Sequence

Translation from 102 to 1151

> LD30520.hyp
MAEAVKNESGSQQRPLDSGGGGGASGGGGVAVGGGSGMPKRKHRRGKKSK
MQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTN
RFLMEEHMSELHKDDSDDNCFGSQTEDQVLFLSKEFSDVYERARLERLET
MSKQELIQECMQIEDRYSKAQNISKEFGAKLRAQDDKIRQLSRENQFLRT
HLLRTCSATAGPAAAAAAAASPPSAVAPTPSSACELQARQQPPQQPQPTP
MDSTSEDSESDSSSTTSSTTSTTSSTSSDGHEMGVAGLNIANGHAERHER
SRTRSRSRSPIHLNGHANEEERQRLLDGNQMEEDDNSSDVSRPADAVVK*

LD30520.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-PA 349 CG3508-PA 1..349 1..349 1791 100 Plus
Hexim-PB 360 CG3508-PB 1..360 1..349 1769 96.9 Plus