Clone LD30622 Report

Search the DGRC for LD30622

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:306
Well:22
Vector:pOT2
Associated Gene/TranscriptTfb2-RA
Protein status:LD30622.pep: validated not full length
Preliminary Size:1675
Sequenced Size:1699

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7764 2001-09-19 Blastp of sequenced clone
Tfb2 2008-04-29 Release 5.5 accounting
Tfb2 2008-08-15 Release 5.9 accounting
Tfb2 2008-12-18 5.12 accounting

Clone Sequence Records

LD30622.complete Sequence

1699 bp (1699 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058612

> LD30622.complete
CCGACACGAAATCCGGTAGTGGTCGGCATTCGGCTGCCGGGGGAAGTGGA
AACGCCGTCCTGTCGCCCTTGGGGCAGGGTCCTGCGAACTTGGAGTGTAA
GGACTTTCAGGAGTATCTGCGCACCCGCCAAACGCCAGAGTCGCTGGAGA
AGCTGTACAACTATCCGCCCATTTGTTTGGCCGTTTTTCGGGAGCTTCCA
GAGATAGCCCGGCAGTTTATCATAAGGATACTGTTCGTGGATCAGCCTGT
GCCACAAGCGGTGGTCACATCATGGGGTGCCCAACGTTGTGCCAAGGAGC
AAGCCGAGGCAACCAGCTGCCTGACGGCTTTGAACGTCTGGCGGGTCACA
GCCATTCCGGGTGGCCTTTCTGCGTGGGAGCTCTCGCCCACCTTCAAGAA
AAGCGTACGCCAGGTGCTGCTGGGCGGCGGAAAACCTTGGCCTATGACCA
ACACGCTGGATAAGGACTCGAAGCCCAGGGACATTGCTTTTCTGGATACA
TACGCCATGTCCCGCTGGCGTTGCGTGTTGCACTACATGGTCGGCACCGG
AAATCGCAATGGCACCGATGCGGAGGCCATTAGTCCGGACGCCGTTCGGA
TTCTGCTGCACGCCAATCTCATGAAACGTGATGAACGAGACGGTATCACA
ATAACCCGGCAGGGCTTTCAGTTCCTGCTGCTGGACACGCGAGCTCAGGT
GTGGCATTTTATGCTACAGTACCTGGACACGTGCGAAGAAAGAGGAATCA
GCCTGCCGGAATGCTTGTCCATGTTGTTCCAGCTCAGTTTTTCAACGCTG
GGCAGGGATTACAGTTCCGAGGGCATGAACAGTCAGATGCTGACATTCCT
GCAGCATCTACGGGAGTTTGGACTGGTCTTCCAACGTAAGCGTAAGGAGG
GACGCTTCTATCCCACACGTTTGGCTCTGAATGTGACAAGCAAGGAGGCG
GCTGCGACTGCATCTGTGGCCATGGATGAGGAGGCCACTCAGGACTGTGG
CTACATTGTGGTGGAGACGAACTACCGAGTGTATGCCTACACTGATTCTC
CGCTCCAGGTAGCCGTGTTAGGTCTGTTCACGGAGCTTCTCTACCGCTTT
CCCAATCTCGTCGTGGGCGTGCTAACCCGCGATTCAGTGCGCCAGGCGTT
GCGTGGCGGTATCACGGCAGAGCAGATTGTCTCGTATCTGGAGCAGTATG
CGCATCCCAATATGCGCATGGTCGAGTCAGCCATTCACTCTAAATCCTGC
CTGCCACCCACAGTCGTTGATCAAATTAAGCTGTGGGAATTAGAGCGAAA
TCGCTTCACCTACACCGAAGGCGTGCTGTACAATCAGTTCCTCTCGCATA
CAGATTTCGTAACGCTACGAGACTACGCCCAGTCGATCCACATGCTGGTG
TGGCAAAATGAGCGAACTCGCACAATGGTGGTGCAAAAGAATGGCCACGA
CGATGTCAAGCGTTACTGGAAGAAGTACTCTAAGAGTGGTGTTTAGCCCG
GTATTACGACCAATTATTGGGAAGTTATTTTAGAAGTAACATCTGTGCCC
ATTTTGTTACAAGCTAAAATTTTAAAATATGGTTTAATAAGGGAGTGTGG
GATTACACATTTATCATCGACATTCAACATACAAGTGGAATAAAATTAAA
ATACACAAGTATCATACACATAAAAACAGAAAAAAAAAAAAAAAAAAAA

LD30622.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
mrn-RA 1918 mrn-RA 174..1856 1..1683 8415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15568698..15570079 1679..296 6825 99.7 Minus
chr3L 24539361 chr3L 15570134..15570429 296..1 1465 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15578765..15580152 1683..296 6940 100 Minus
3L 28110227 3L 15580207..15580502 296..1 1480 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15571865..15573252 1683..296 6940 100 Minus
3L 28103327 3L 15573307..15573602 296..1 1480 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:43:13 has no hits.

LD30622.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:44:29 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15568698..15570079 296..1679 99 <- Minus
chr3L 15570135..15570429 1..295 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:31 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb2-RA 5..1500 1..1496 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:38 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
mrn-RA 5..1500 1..1496 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:38:13 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
mrn-RA 5..1500 1..1496 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:05 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb2-RA 5..1500 1..1496 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:57 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
mrn-RA 5..1500 1..1496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:49:35 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb2-RA 174..1852 1..1679 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:37 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
mrn-RA 174..1852 1..1679 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:38:13 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
mrn-RA 36..1714 1..1679 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:05 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb2-RA 174..1852 1..1679 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:57 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
mrn-RA 36..1714 1..1679 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:44:29 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15578769..15580152 296..1679 100 <- Minus
3L 15580208..15580502 1..295 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:44:29 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15578769..15580152 296..1679 100 <- Minus
3L 15580208..15580502 1..295 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:44:29 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15578769..15580152 296..1679 100 <- Minus
3L 15580208..15580502 1..295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:38:13 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15571869..15573252 296..1679 100 <- Minus
arm_3L 15573308..15573602 1..295 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:43 Download gff for LD30622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15571869..15573252 296..1679 100 <- Minus
3L 15573308..15573602 1..295 100   Minus

LD30622.pep Sequence

Translation from 2 to 1495

> LD30622.pep
DTKSGSGRHSAAGGSGNAVLSPLGQGPANLECKDFQEYLRTRQTPESLEK
LYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAKEQ
AEATSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGGKPWPMTN
TLDKDSKPRDIAFLDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRI
LLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYLDTCEERGIS
LPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLVFQRKRKEG
RFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDSP
LQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYA
HPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHT
DFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSKSGV*

LD30622.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10392-PA 497 GF10392-PA 6..496 6..496 2412 91 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13537-PA 499 GG13537-PA 3..499 1..497 2638 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16811-PA 493 GH16811-PA 3..492 1..496 2385 89.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
mrn-PA 499 CG7764-PA 3..499 1..497 2602 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12214-PA 492 GI12214-PA 3..491 1..496 2313 86.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25529-PA 494 GL25529-PA 3..493 1..496 2453 91.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20571-PA 494 GA20571-PA 3..493 1..496 2453 91.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24480-PA 499 GM24480-PA 3..499 1..497 2680 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12553-PA 500 GD12553-PA 3..500 1..497 2664 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11446-PA 492 GJ11446-PA 3..491 1..496 2384 89.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20438-PA 512 GK20438-PA 3..511 1..496 2404 87.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22863-PA 499 GE22863-PA 3..499 1..497 2634 97.8 Plus
Dyak\GE22864-PA 241 GE22864-PA 1..241 257..497 1280 98.8 Plus

LD30622.hyp Sequence

Translation from 2 to 1495

> LD30622.hyp
DTKSGSGRHSAAGGSGNAVLSPLGQGPANLECKDFQEYLRTRQTPESLEK
LYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAKEQ
AEATSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGGKPWPMTN
TLDKDSKPRDIAFLDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRI
LLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYLDTCEERGIS
LPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLVFQRKRKEG
RFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDSP
LQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYA
HPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHT
DFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSKSGV*

LD30622.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
mrn-PA 499 CG7764-PA 3..499 1..497 2602 100 Plus